BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G54600.1 Length=829 Score E Sequences producing significant alignments: (Bits) Value Ahg495542 jgi|Araly1|495542|fgenesh2_kg.8__1358__AT5G54600.1 1153 0.0 > Ahg495542 jgi|Araly1|495542|fgenesh2_kg.8__1358__AT5G54600.1 Length=695 Score = 1153 bits (624), Expect = 0.0 Identities = 671/694 (97%), Gaps = 2/694 (0%) Strand=Plus/Plus Query 64 AAAAAATGGCAACCATGTCTGCTCTTCAGAGCTCTTTTACTTCTCTTTCTCTAT-CTCCC 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1 AAAAAATGGCAACCATGTCTGCTCTTCAGAGCTCTTTTACTTCTCTTTCTCTATCCT-CC 59 Query 123 AGCTCTTCCTTCCTCGGCCAGCGTTTAATTTCCCCGATTTCCCTCTCCGTCACTTCTCCG 182 | |||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct 60 AACTCTTCTTTCCTCGGCCAGCGTTTAATTTCTCCGATTTCCTTCTCCGTCACTTCTCCG 119 Query 183 GTCAAGCCCGCTGAGAACCCATGTCTTGTTCTTGCAAAGCTCAAGCGTTGGGAACGAAAA 242 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 GTCAAGCCCGCCGAGAACCCATGTCTTGTTCTTGCAAAGCTCAAGCGTTGGGAACGAAAA 179 Query 243 GAATGCAAACCAAACAGTCTTCCGATTCTCCACAAAATGCATGTCAAGTTTGGAGATACA 302 ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 180 GAATGCAAACCAAACAGCCTTCCGATTCTGCACAAAATGCATGTCAAGTTTGGAGATACG 239 Query 303 GTCAAAGTAATATCTGGACGCGACAAGGGTAAAATCGGAGAGGTTACTAAGATTTTCACT 362 |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 240 GTCAAAGTTATATCTGGACGCGACAAGGGTAAAATCGGAGAGGTCACTAAGATCTTCACT 299 Query 363 CACAACAGTACCATTGTGATCAAAGATGTGAACCTCAAAACAAAACACATGAAGAGCCGA 422 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 300 CACAACAGTACCATTGTGATCAAAGATGTTAACCTCAAAACAAAACACATGAAGAGCAGA 359 Query 423 GAAGAGGGAGAGCCTGGTCAAATTGTCAAGATAGAAGCACCTATCCACAGCTCAAATGTG 482 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 360 GAAGAGGGAGAACCTGGTCAAATTGTCAAGATAGAAGCACCTATCCACAGCTCAAACGTG 419 Query 483 ATGTTGTATTCAAAAGAAAAAGACGTAGTAAGCCGGGTGGGTCACAAGGTACTTGAAGAT 542 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 420 ATGTTGTATTCAAAAGAAAAAGACGTAGTAAGCCGGGTGGGTCACAAGGTACTTGCGGAT 479 Query 543 GGACAGAAGGTAAGATATCTGATCAAAACAGGGGAACTCATCGACACCATTGAGAAGTGG 602 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 480 GGACAGAAGGTAAGATATCTGATCAAAACAGGGGAACTTATCGACACCATTGAGAAGTGG 539 Query 603 AAGCTACTTAAGGAGGCTAAGGATAAGGAAACCACCCAAGTTGCAGTTACCTCCGCATCT 662 |||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 540 AAGCAACTTAAGGAGGCTAAGGGTAAAGAAACCACCCAAGTTGCAGTTACCTCCGCATCT 599 Query 663 TAGCGTCTCATTTCTTTCTTCTTCAGTGCACTTTTGATATAATAGACCTATGCATTGGAT 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TAGCGTCTCATTTCTTTCTTCTTCAGTGCACTTTTGATATAATAGACCTATGCATTGGAT 659 Query 723 GGATGTATTGAATCCCTTTTAAGGTAAATTATAA 756 |||||||||||||||||||||||||||||||||| Sbjct 660 GGATGTATTGAATCCCTTTTAAGGTAAATTATAA 693 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30650825268 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5