BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G54640.1 Length=669 Score E Sequences producing significant alignments: (Bits) Value Ahg950114 jgi|Araly1|950114|scaffold_802001.1 680 0.0 Ahg492075 jgi|Araly1|492075|fgenesh2_kg.7__1508__AT4G27230.1 473 6e-133 Ahg474223 jgi|Araly1|474223|fgenesh2_kg.1__4177__AT1G51060.1 372 2e-102 Ahg930013 jgi|Araly1|930013|scaffold_302470.1 348 4e-95 Ahg947885 jgi|Araly1|947885|scaffold_704114.1 243 2e-63 Ahg337754 jgi|Araly1|337754|fgenesh1_pg.C_scaffold_1004319 237 8e-62 > Ahg950114 jgi|Araly1|950114|scaffold_802001.1 Length=434 Score = 680 bits (368), Expect = 0.0 Identities = 411/432 (95%), Gaps = 2/432 (0%) Strand=Plus/Plus Query 47 GGTTGTTGTTGTTG-AAAATGGCTGGTCGTGGAAAAACTCTTGGATCCGGTGGGGCGAAG 105 ||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 4 GGTGGTTGTTGTTGAAAAATGGCTGGTCGTGGAAAAACTCTTGGATCCGGTGCGGCGAAG 63 Query 106 AAAGCTACATCTCGGAGTAGCAAAGCCGGTCTTCAATTCCCGGTGGGTCGTATCGCTCGT 165 ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 64 AAAGCCACATCTCGGAGTAGCAAAGCTGGTCTTCAATTTCCGGTGGGTCGTATCGCTCGA 123 Query 166 TTCTTAAAAGCCGGTAAATACGCCGAACGTGTTGGTGCCGGTGCTCCGGTTTATCTCGCC 225 ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 124 TTCTTGAAAGCCGGTAAATACGCCGAACGTGTTGGTGCTGGTGCTCCGGTCTATCTCGCC 183 Query 226 GCCGTTCTCGAATATTTGGCCGCCGAGGTTCTTGAATTAGCTGGAAACGCAGCAAGAGAC 285 |||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 184 GCCGTTCTTGAGTATTTGGCCGCCGAGGTTCTTGAATTAGCTGGGAACGCAGCAAGAGAC 243 Query 286 AACAAGAAGACACGTATTGTTCCTCGTCACATTCAGCTTGCGGTCAGAAACGATGAGGAG 345 ||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||| Sbjct 244 AACAAGAAGACACGTATTGTTCCTCGTCATATTCAGCTCGCTGTTAGAAACGATGAGGAG 303 Query 346 CTAAGCAAGCTTCTTGGAGATGTGACGATTGCTAATGGAGGAGTGATGCCTAACATCCAC 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 304 CTAAGCAAGCTTCTTGGAGATGTGACGATTGCTAATGGAGGAGTGATGCCTAACATCCAC 363 Query 406 AATCTCCTTCTCCCTAAGAAGGCTGGTGCTTCAAAGCCTCAGGAAGATTAGGTCTTTTAA 465 ||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| || Sbjct 364 AATCTCCTTCTCCCTAAGAAGTCTGGTCCTTCAAAGCCACAGGAAGATTAGGTCTTT-AA 422 Query 466 CACAATGATATA 477 |||||||||||| Sbjct 423 CACAATGATATA 434 > Ahg492075 jgi|Araly1|492075|fgenesh2_kg.7__1508__AT4G27230.1 Length=601 Score = 473 bits (256), Expect = 6e-133 Identities = 355/402 (88%), Gaps = 9/402 (2%) Strand=Plus/Plus Query 62 AAATGGCTGGTCGTGGAAAAAC-TCTTGGATCCGGTGGGGCGAAGAAAG-CTACATCTCG 119 ||||||| ||||| || ||||| || ||||| |||| ||||||| ||| |||| ||||| Sbjct 51 AAATGGCGGGTCG-GGGAAAACAACTAGGATCTGGTGCGGCGAAG-AAGTCTACTTCTCG 108 Query 120 GAGTAGCAAAGCCGGTCTTCAATTCCCGGTGGGTCGTATCGCTCG-TTTCTTAAAAGCCG 178 |||||||| || || ||||||||||| ||||||||||||||||| ||| || ||||||| Sbjct 109 TAGTAGCAAGGCTGGGCTTCAATTCCCAGTGGGTCGTATCGCTCGATTT-TTGAAAGCCG 167 Query 179 GTAAATACGCCGAACGTGTTGGTGCCGGTGCTCCGGTTTATCTCGCCGCCGTTCTCGAAT 238 |||| |||||||| |||||||||||||| |||||||| ||||||||||||||||| |||| Sbjct 168 GTAAGTACGCCGAGCGTGTTGGTGCCGGAGCTCCGGTCTATCTCGCCGCCGTTCTTGAAT 227 Query 239 ATTTGGCCGCCGAGGTTCTTGAATTAGCTGGAAACGCAGCAAGAGACAACAAGAAGACAC 298 | | ||||||||||||||||| ||||||| |||||||||||||| ||||||||||| | Sbjct 228 ACCTCGCCGCCGAGGTTCTTGAGCTAGCTGGGAACGCAGCAAGAGATAACAAGAAGACCC 287 Query 299 GTATTGTTCCTCGTCACATTCAGCTTGCGGTCAGAAACGATGAGGAGCTAAGCAAGCTTC 358 |||| |||||||| |||||||||||||| || || ||||||||||| ||||||||||| | Sbjct 288 GTATAGTTCCTCGACACATTCAGCTTGCTGTGAGGAACGATGAGGAACTAAGCAAGCTAC 347 Query 359 TTGGAGATGTGACGATTGCTAATGGAGGAGTGATGCCTAACATCCACAATCTCCTTCTCC 418 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 348 TTGGAGATGTGACAATTGCTAATGGAGGAGTGATGCCTAACATCCACAATCTCCTTCTCC 407 Query 419 CTAAGAAGGCTGGTGCTTCAAAGCCT-C--AGGAAGATTAGG 457 |||||||| ||||| | || |||||| | |||||||||||| Sbjct 408 CTAAGAAGTCTGGTCCCTCCAAGCCTACTGAGGAAGATTAGG 449 > Ahg474223 jgi|Araly1|474223|fgenesh2_kg.1__4177__AT1G51060.1 Length=581 Score = 372 bits (201), Expect = 2e-102 Identities = 328/388 (85%), Gaps = 14/388 (4%) Strand=Plus/Plus Query 63 AATGGCTGGTCGTGGAAAAACTCTTGGATCCGG-TGGGGCGAAGAAAGCTACATCTCGGA 121 |||||| |||||||| |||||||| ||||| || | |||||||| || ||| | | | Sbjct 62 AATGGCGGGTCGTGGCAAAACTCTCGGATCTGGAT-CTGCGAAGAAGGCAACAACAAGAA 120 Query 122 GTAGCAAAGCCGGTCTTCAATTCCCGGTGGGTCGTATCGCTCGTTTCTT-AA-AAGCCGG 179 | ||||||||||||||||||||||||||||||||||||||||||||||| || || || Sbjct 121 GCAGCAAAGCCGGTCTTCAATTCCCGGTGGGTCGTATCGCTCGTTTCTTGAAGAAA--GG 178 Query 180 TAAATACGCCGAACGTGTTGGTGCCGGTGCTCCGGTTTATCTC-GCCGCCGTTCTCGAAT 238 |||||||||||||||||||||||||| ||||||||||| || |||||||||||||||| Sbjct 179 CAAATACGCCGAACGTGTTGGTGCCGGAGCTCCGGTTTA-CTTAGCCGCCGTTCTCGAAT 237 Query 239 ATTTGGCCGCCGAGGTTCTTG-AATTAGCTGGAAACGCAGCAAGAGACAACAAGAAGACA 297 | | |||||||||||| ||| |||| |||||||||||||| ||||| |||||||||||| Sbjct 238 ACCTCGCCGCCGAGGTT-TTGGAATTGGCTGGAAACGCAGCGAGAGATAACAAGAAGACA 296 Query 298 CGTATTGTTCCTCGTCACATTCAGCTTG-CGGTCAGAAACGATGAGGAGCTAAGCAAGCT 356 | |||||||| | || ||||| ||| |||| || |||||||| || | ||||| | Sbjct 297 AGGATTGTTCCGAGGCATATTCAA-TTGGCGGTGAGGAACGATGAAGAATTGAGCAAA-T 354 Query 357 T-CTTGGAGATGTGACGATTGCTAATGGAGGAGTGATGCCTAACATCCACAATCTCCTTC 415 | ||||| |||||||| ||||||||||| || |||||||||||||| |||||||| |||| Sbjct 355 TGCTTGGTGATGTGACTATTGCTAATGGTGGTGTGATGCCTAACATTCACAATCTTCTTC 414 Query 416 TCCCTAAGAAGGCTGGTGCTTCAAAGCC 443 | ||||||||| |||||||||| ||||| Sbjct 415 TTCCTAAGAAGACTGGTGCTTCCAAGCC 442 > Ahg930013 jgi|Araly1|930013|scaffold_302470.1 Length=441 Score = 348 bits (188), Expect = 4e-95 Identities = 327/392 (83%), Gaps = 18/392 (5%) Strand=Plus/Plus Query 62 AAATGGCTGGTCGTGGAAAAACTCTTGGATCCGGTGGGGCGAAGAAAG-CTACATCTCGG 120 ||||||||||||||||||||||||| ||||| || | || ||| ||| | ||||| | Sbjct 20 AAATGGCTGGTCGTGGAAAAACTCTCGGATCTGGCGTTGCTAAG-AAGTCAACATCGAGA 78 Query 121 AGTAGCAAAGCCGGTCTTCAATTCCCGGTGGGTCGTATCGCTCG-TTTCTTAA-AAGCCG 178 || |||||||||||||| |||||||| || ||||| |||||||| ||||| || || || Sbjct 79 AGCAGCAAAGCCGGTCTCCAATTCCCCGTTGGTCGAATCGCTCGTTTTCTGAAGAA--CG 136 Query 179 GTAAATACGCCGA-ACGTGTTGGTGCCGGTGCTCCGGTTTATC-TCGCCGCCGTTCTCGA 236 | || |||| | | ||||||||||||||| |||||||| || | | ||||| |||||||| Sbjct 137 GCAAGTACG-CAACACGTGTTGGTGCCGGAGCTCCGGTCTA-CTTAGCCGCTGTTCTCGA 194 Query 237 ATATTTGGCCGCCGAGGTTCTTGAATTAGCTGGAAACGCAGCAAGAGACAACAAGAAGAC 296 ||| | ||||| ||||| || || || |||||||||||||| || || ||||||||||| Sbjct 195 ATACCTCGCCGCTGAGGTACTGGAGTTGGCTGGAAACGCAGCGAGGGATAACAAGAAGAC 254 Query 297 -ACGTATTGTTCCTCGTCACATTCAGCTTGCGGTCAGAAACGATGAGGAGCTAAGCAAGC 355 | | ||||| || |||||||||||||| ||||| || || ||||||||||| || ||| Sbjct 255 TA-GGATTGTGCCACGTCACATTCAGCTCGCGGTGAGGAATGATGAGGAGCTGAGTAAG- 312 Query 356 TT-CTTGGAGATGTGACGATTGCTAATGGAGGAGTGATGCCTAACATCCACAATCTCCTT 414 || ||||||||||||||||||||||||||||| |||||||||||||| |||| ||| ||| Sbjct 313 TTGCTTGGAGATGTGACGATTGCTAATGGAGGTGTGATGCCTAACATTCACAGTCTTCTT 372 Query 415 CT-CCCTAAGAAGGCTGGTGCTTC-AAAGCCT 444 || ||| ||||||||||||||||| ||| ||| Sbjct 373 CTTCCC-AAGAAGGCTGGTGCTTCCAAA-CCT 402 > Ahg947885 jgi|Araly1|947885|scaffold_704114.1 Length=469 Score = 243 bits (131), Expect = 2e-63 Identities = 232/280 (83%), Gaps = 10/280 (4%) Strand=Plus/Plus Query 127 AAAGCCGGTCTTCA-ATTCCCGGTGGGTCGTATCGCTCG-TTTCTTAAAAGCCGGTAAAT 184 ||||| |||||||| ||||| || || | |||||| | || ||| |||||||| |||| Sbjct 102 AAAGCTGGTCTTCAGTTTCCC-GTTGGAAGAATCGCTAGATTCCTT-AAAGCCGGAAAAT 159 Query 185 ACGCCGAACGTGTTGGTGCCGGTGCTCCGGTTTATCTCGCCGCCGTTCTCGAATATTTGG 244 |||| ||||||||||||||||||||||||||||||||| |||||||||| || || | | Sbjct 160 ACGCTGAACGTGTTGGTGCCGGTGCTCCGGTTTATCTCTCCGCCGTTCTTGAGTACCTCG 219 Query 245 CCGCCGAGGTTCTTGAA--TTAGCTGGAAACGCAGCAAGAGACAACAAGAAGACACGTAT 302 |||| ||| | ||| | || |||||||| || |||||||| ||||||||||||||||| Sbjct 220 CCGCTGAGCTA-TTGGAGCTT-GCTGGAAATGCGGCAAGAGATAACAAGAAGACACGTAT 277 Query 303 TGTTCCTCGTCACATTCAGCTTGCGGTCAGAAACGATGAGGAGCTAAGCAAGCTTCTTGG 362 || || || |||||||||||||| || ||||||||||| ||||| || || |||||||| Sbjct 278 CGTACCACGACACATTCAGCTTGCAGTGAGAAACGATGAAGAGCTTAGTAAACTTCTTGG 337 Query 363 A-GATGTGACGATTGCTAATGGAGGAGTGATGCCTAACAT 401 | | ||| || || |||||||||||||| |||||||||| Sbjct 338 AAG-TGTAACAATCGCTAATGGAGGAGTTTTGCCTAACAT 376 > Ahg337754 jgi|Araly1|337754|fgenesh1_pg.C_scaffold_1004319 Length=630 Score = 237 bits (128), Expect = 8e-62 Identities = 229/277 (83%), Gaps = 10/277 (4%) Strand=Plus/Plus Query 127 AAAGCCGGTCTTCA-ATTCCCGGTGGGTCGTATCGCTCG-TTTCTTAAAAGCCGGTAAAT 184 ||||| |||||||| ||||| || || | |||||| | || ||| |||||||| |||| Sbjct 82 AAAGCTGGTCTTCAGTTTCCC-GTTGGAAGAATCGCTAGATTCCTT-AAAGCCGGAAAAT 139 Query 185 ACGCCGAACGTGTTGGTGCCGGTGCTCCGGTTTATCTCGCCGCCGTTCTCGAATATTTGG 244 |||| ||||||||||||||||||||||||||||||||| |||||||||| || || | | Sbjct 140 ACGCTGAACGTGTTGGTGCCGGTGCTCCGGTTTATCTCTCCGCCGTTCTTGAGTACCTCG 199 Query 245 CCGCCGAGGTTCTTGAA--TTAGCTGGAAACGCAGCAAGAGACAACAAGAAGACACGTAT 302 |||| ||| | ||| | || |||||||| || |||||||| ||||||||||||||||| Sbjct 200 CCGCTGAGCTA-TTGGAGCTT-GCTGGAAATGCGGCAAGAGATAACAAGAAGACACGTAT 257 Query 303 TGTTCCTCGTCACATTCAGCTTGCGGTCAGAAACGATGAGGAGCTAAGCAAGCTTCTTGG 362 || || || |||||||||||||| || ||||||||||| ||||| || || |||||||| Sbjct 258 CGTACCACGACACATTCAGCTTGCAGTGAGAAACGATGAAGAGCTTAGTAAACTTCTTGG 317 Query 363 A-GATGTGACGATTGCTAATGGAGGAGTGATGCCTAA 398 | | ||| || || |||||||||||||| ||||||| Sbjct 318 AAG-TGTAACAATCGCTAATGGAGGAGTTTTGCCTAA 353 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24551158548 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5