BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54660.1
Length=790
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950116 jgi|Araly1|950116|scaffold_802003.1 920 0.0
> Ahg950116 jgi|Araly1|950116|scaffold_802003.1
Length=623
Score = 920 bits (498), Expect = 0.0
Identities = 572/608 (94%), Gaps = 3/608 (0%)
Strand=Plus/Plus
Query 26 CATTCGTCTCAATTTCTCTCATGACGAGTAGTAGTGGAAGCCTCAAACTAGAGATCCACA 85
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1 CATTCGTCTCAATTTCTCTCATGACGAGTTGTAGTGGAAGTCTCAAACTAGAGATCCACA 60
Query 86 CTGATGACAAGACGCCGGGAAAGTGGAGCGTACCGCTCGGCGATGATGTTTTCCGAAGGT 145
| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 CCGACGACAAGACGCCGGGAAAGTGGAGCGTACCTCTCGGCGATGATGTTTTCCGAAGGT 120
Query 146 TCTTGAGCGGGGGAGGAGGCTCGGAGAAGGCTGTGTTCGGTGAGGGGTCTCTTTTTAGCC 205
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 121 TCTTGAGCGGGGGAGGAGGCTCCGAGAAGGCTGTGTTCGGTGAGGGATCTCTTTTTAGCC 180
Query 206 CGTTTTTGTTCGGGAAGTACTTTGATCCGTCAGACGCCTTTCCGTTGTGGGAATTTGAAG 265
| |||||||||||||||||||||||||| ||||| || ||||| |||||||| ||||| |
Sbjct 181 CCTTTTTGTTCGGGAAGTACTTTGATCCATCAGATGCGTTTCCCTTGTGGGAGTTTGAGG 240
Query 266 CTGAGGTTTTGCTGGCGAGCCTTAGGAGCTT---AGGACAGTGTAGAGTCGATTGGTCTC 322
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 CTGAGGTTTTGCTGGCGAGCCTTAGGAGCTTAGGAGGACAGTGTAGAGTCGATTGGTCTC 300
Query 323 AGACGGATCAAGCTTATGTCCTTAAATCCGATATCCCCGTGGTGGGGAAAAATAACGTGC 382
|||| |||| |||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 301 AGACCGATCTAGCTTATGTCCTTAAATCTGATATCCCCGTGGTGGGGAAAAATTACGTGC 360
Query 383 AGGTGTACGTGGACATTAACGGAAGAGTGATGGAGATTAGTGGCCAATGGAACAGCAACA 442
||||||| |||||| ||||||||| ||| ||||||||||||||||| ||||||| |||||
Sbjct 361 AGGTGTATGTGGACGTTAACGGAAAAGTAATGGAGATTAGTGGCCAGTGGAACAACAACA 420
Query 443 AGAAAGCGGCGACCAACAGTGACTGGAGAAGCGGCCGGTGGTGGGAACATGGCTATGTCC 502
||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGAAAGCGGCGGCTAACGGTGACTGGAGAAGCGGCCGGTGGTGGGAACATGGCTATGTCC 480
Query 503 GCCGTCTCGAGCTTCCTAGCGATGCCGACGCCAAATACTCTGAAGCTTTCCTCTCTAACA 562
||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 481 GCCGTCTCGAGCTCCCTTGCGATGCCGACGCCAAAAACTCTGAAGCTTTCCTCTCCAACA 540
Query 563 ACGACGATTACTCTTTCTTAGAGATCCGAATCCCTAAGATAAATTCTAAGAACAAGTTTT 622
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 541 ACGACGACTACTCTTTCTTAGAGATCCGAATCCCTAAGATTAATTCTAAGAACAAGTTTT 600
Query 623 AATCTGAT 630
||||||||
Sbjct 601 AATCTGAT 608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29164031505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5