BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G54760.1 Length=763 Score E Sequences producing significant alignments: (Bits) Value Ahg495556 jgi|Araly1|495556|fgenesh2_kg.8__1372__AT5G54760.1 917 0.0 Ahg474560 jgi|Araly1|474560|fgenesh2_kg.1__4514__AT1G54290.1 366 1e-100 > Ahg495556 jgi|Araly1|495556|fgenesh2_kg.8__1372__AT5G54760.1 Length=637 Score = 917 bits (496), Expect = 0.0 Identities = 604/650 (93%), Gaps = 31/650 (5%) Strand=Plus/Plus Query 3 TATTTTCTCACCGTCGAGAAAACAAAACACAAGTTGCAGACTTTATCCAAATTTAGGGTT 62 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | Sbjct 2 TATTTTCTCACCGTCGAGAGAACAAAACGCAAGTTGCAGACTTTATCCAAATTTAGGG-T 60 Query 63 TTCTCtttttttCTTACTTAGTTATCATCAGATCTTCA-AAACCCCAA---AATTTGCAA 118 || || | || || ||||||||||||||| | ||||||||| |||||||| Sbjct 61 TT-TC------T-TT--TT--TTATCATCAGATCTT-AGAAACCCCAATTTTATTTGCAA 107 Query 119 ATCAGATCTCAGCTTCCCGGTTAGTACTACCCTCAAATCAACTAAGTTTCATGTCTGAAC 178 | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 108 AACAGATCTCAGCTTCCCGGTTAGTTTTACCCTCAAATCAACTAAGTTTCATGTCTGAAC 167 Query 179 TTGACTCCCAGGTTCCCACTGCCTTTGATCCGTTTGCTGATGCGAATGTTGAGGACTCAG 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 168 TTGACTCCCAGGTTCCCACTGCCTTTGATCCGTTTGCTGATGCGAATGTTGAGGACTCAG 227 Query 239 GTGCCGGAACAAAAGAATACGTTCATATCCGTGTCCAGCAGCGAAATGGTAGGAAAAGCT 298 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 228 GTGCCGGAACAAAGGAGTACGTTCATATCCGTGTCCAGCAGCGAAATGGTAGGAAAAGCT 287 Query 299 TGACAACCGTCCAGGGCCTGAAGAAAGAGTACAGCTATACCAAGATACTTAAGGACCTCA 358 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 288 TGACAACCGTCCAGGGCCTGAAGAAAGAGTACAGCTATACCAAGATACTTAAAGACCTCA 347 Query 359 AGAAAGAGTTTTGCTGCAACGGCACTGTGGTTCAGGATTCAGAACTCGGACAGGTTATAC 418 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 348 AGAAAGAGTTTTGCTGCAACGGCACTGTGGTTCAGGATTCAGAACTTGGACAGGTCATAC 407 Query 419 AGCTTCAAGGTGACCAACGTAAGAACGTCTCCACATTCCTTGTCCAGGCTGGTTTGGTGA 478 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 408 AGCTTCAAGGTGACCAGCGTAAGAACGTCTCCACATTCCTTGTTCAGGCTGGTTTGGTGA 467 Query 479 AGAAGGATAACATCAAGATCCATGGTTTCTAAGCTATCTAGTGGATCATATTATTAATAA 538 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 468 AGAAGGATAACATCAAGATCCATGGTTTCTAAGCTATCTAGTGGATCATATTAATAATAA 527 Query 539 AACCATATC-TT-T-TTCTTTCATCTCTTGTTGCGAATTTCGGGTTTGATTC-A-T---C 590 ||||||||| || | ||||||||||||||||||||||||||||||||||||| | | | Sbjct 528 AACCATATCATTCTCTTCTTTCATCTCTTGTTGCGAATTTCGGGTTTGATTCGAGTAGAC 587 Query 591 -A--A-AATCGTCTTCTTCCTAGTGTTCTTC-TTCTGTTTGGTATTCGAA 635 | | |||||||| |||||||||||||||| |||||||||||||||||| Sbjct 588 GATCAGAATCGTCTGCTTCCTAGTGTTCTTCATTCTGTTTGGTATTCGAA 637 > Ahg474560 jgi|Araly1|474560|fgenesh2_kg.1__4514__AT1G54290.1 Length=749 Score = 366 bits (198), Expect = 1e-100 Identities = 312/367 (85%), Gaps = 8/367 (2%) Strand=Plus/Plus Query 158 AAC-TAAGTTTCATGTCTGAACTTG-ACTCCCAGGTTCCCACTGCCTTTGATCCGTTTGC 215 ||| |||| ||||||||||| |||| | | || || ||||||||||||||||||||||| Sbjct 206 AACTTAAGGTTCATGTCTGATCTTGAAGT-TCAAGTCCCCACTGCCTTTGATCCGTTTGC 264 Query 216 TGATGCGAATGTTGAGGACTCAGGTGCCGGAACAAAAGAATACGTTCATATCCGTGTCCA 275 |||||| |||| ||||||||| || || |||||||| |||||||| || || ||||| || Sbjct 265 TGATGCAAATGCTGAGGACTCTGGGGCGGGAACAAAGGAATACGTGCACATTCGTGTTCA 324 Query 276 GCAGCGAAATGGTAGGAAAAGCTTGACAACCGTCCAGGGCCTGAAGAAAGAGTACAGCTA 335 |||||| |||||||| |||||||||||||| || ||||| || ||||||||||| ||||| Sbjct 325 GCAGCGTAATGGTAGAAAAAGCTTGACAACTGTTCAGGGACTTAAGAAAGAGTATAGCTA 384 Query 336 TACCAAGATACTTAAGGACCTCAAGAAAGAGTTTTGCTGCAACGGCACTGTGGTTCAGGA 395 || |||||||||||| ||||| |||||||| || |||||||| |||||||| || ||||| Sbjct 385 TAGCAAGATACTTAAAGACCTTAAGAAAGAATTCTGCTGCAATGGCACTGTTGTCCAGGA 444 Query 396 TTCAGAACTCGGACAGGTTATACAGCTTCAAGGTGACCA-ACGTAAGAACGTCTCCACAT 454 || ||| | ||||||||||| ||||||||||| || || | | ||||||||||| || | Sbjct 445 CTCTGAATTAGGACAGGTTATTCAGCTTCAAGGCGATCAGAGG-AAGAACGTCTCTACGT 503 Query 455 TCCTTGTCCAGGCTGGT-TTGGTGAAGAAGGATAACATCAAGATCCATGGTTTCTAAGCT 513 ||||||| |||||||| ||| ||||||||||||||||||| ||||||||||| | ||| Sbjct 504 TCCTTGTTCAGGCTGGGCTTG-TGAAGAAGGATAACATCAAAATCCATGGTTTTTGAGCA 562 Query 514 AT-CTAG 519 || |||| Sbjct 563 ATTCTAG 569 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28134712746 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5