BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54960.1
Length=2075
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495579 jgi|Araly1|495579|fgenesh2_kg.8__1395__AT5G54960.1 3155 0.0
> Ahg495579 jgi|Araly1|495579|fgenesh2_kg.8__1395__AT5G54960.1
Length=1997
Score = 3155 bits (1708), Expect = 0.0
Identities = 1906/2002 (95%), Gaps = 11/2002 (1%)
Strand=Plus/Plus
Query 80 TATGGACACTAAGATCGGATCTATCGACGCGTGTAACCCGACCAACCACGATATCGGCGG 139
||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||
Sbjct 1 TATGGACACTAAGATCGGATCCATCGACGCGTGTAACCCGACCCACGACGATATCGGCGG 60
Query 140 TCCTCCAAACGGCGGAGTCTCCACCGTTCAAAACACAAGTCCACTTCACTCCACCACCGT 199
||||||||||||||| ||||| |||||||||||| |||||||||||||||||| ||| ||
Sbjct 61 TCCTCCAAACGGCGGCGTCTCTACCGTTCAAAACTCAAGTCCACTTCACTCCATCACAGT 120
Query 200 CAGCCCCTGCGACGCGACTCTTGGCCGTTACCTAGCAAGACGGTTAGTCGAAATCGGCGT 259
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 CAGCCCCTGCGACGCGACTCTTGGCCGTTACCTAGCGAGACGGTTAGTCGAAATCGGCGT 180
Query 260 CACCGATGTCTTCTCCGTTCCTGGTGATTTCAACCTGACGCTTCTCGATCACCTAATCGC 319
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 181 CACCGATGTCTTCTCCGTTCCTGGTGATTTCAACCTAACGCTTCTCGATCACCTCATCGC 240
Query 320 CGAACCAAACCTCAAGCTGATCGGTTGCTGCAACGAGCTTAACGCCGGATACGCTGCTGA 379
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 CGAACCAAGCCTCAAGCTGATCGGTTGCTGTAACGAGCTTAACGCCGGATACGCTGCTGA 300
Query 380 CGGTTACGCTAGATCTCGCGGTGTTGGTGCGTGCGTCGTTACGTTCACCGTCGGTGGATT 439
||||||||| ||||||||||| | |||||| |||||||||||||||||||||||||||||
Sbjct 301 CGGTTACGCCAGATCTCGCGGCGCTGGTGCTTGCGTCGTTACGTTCACCGTCGGTGGATT 360
Query 440 GAGTGTTC-TGAATGCGATCGCCGGTGCTTACAGTGAGAATCTGCCTCTGATTTGCATCG 498
||||| || |||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 361 GAGTG-TCTTGAATGCGATCGCCGGTGCTTATAGTGAGAATCTGCCTTTGATTTGCATCG 419
Query 499 TCGGTGGTCCAAACTCCAACGATTACGGTACCAATAGGATTCTTCATCATACAATTGGTT 558
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 420 TCGGTGGTCCAAACTCCAACGATTACGGTACCAATAGGATTCTTCATCATACGATTGGTT 479
Query 559 TACCTGATTTCACTCAAGAGCTTAGGTGTTTTCAAGCTGTTACTTGTTTTCAAGCTGTGA 618
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 TACCTGATTTCACTCAAGAGCTTAGGTGTTTTCAAGCTGTTACTTGTTATCAAGCTGTGA 539
Query 619 TTAATAACTTAGAAGAGGCTCATGAACTTATCGATACTGCGATTTCAACTGCTTTGAAAG 678
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 540 TTAATAACTTGGAAGAAGCTCATGAACTCATCGATACTGCGATTTCAACTGCTTTGAAAG 599
Query 679 AAAGCAAACCTGTTTATATCAGTATCAGCTGTAATTTACCGGCGATTCCTCTTCCGACGT 738
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 600 AAAGCAAACCTGTTTATATCAGTATCAGCTGTAATTTGCCGGCGATTCCTCTTCCGACTT 659
Query 739 TTAGTCGTCATCCTGTTCCGTTCATGCTTCCGATGAAGGTTAGCAATCAGATTGGTTTAG 798
||||||||||||||||||||||||||||| || |||||| || |||||||| ||| |||
Sbjct 660 TTAGTCGTCATCCTGTTCCGTTCATGCTTACGCCGAAGGTGAGTAATCAGATGGGTATAG 719
Query 799 ATGCGGCGGTGGAGGCAGCTGCTGAGTTCTTGAACAAAGCTGTGAAGCCAGTTCTTGTTG 858
|||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 720 ATGCGGCGGTAGAGGCAGCTGCTGAATTCTTGAACAAAGCGGTGAAGCCAGTTCTTGTTG 779
Query 859 GTGGGCCGAAAATGCGGGTTGCGAAAGCCGCGGATGCTTTTGTTGAGCTTGCTGATGCTT 918
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 780 GAGGGCCGAAAATGCGGGTTGCGAAAGCCGCTGATGCTTTTGTTGAGCTTGCTGATGCTT 839
Query 919 CTGGCTATGGTCTTGCTGTGATGCCTTCTGCTAAAGGACAAGTACCTGAGCATCACAAGC 978
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTGGTTATGGTCTTGCTGTGATGCCTTCTGCTAAAGGACAAGTACCTGAGCATCACAAGC 899
Query 979 ATTTTATAGGGACGTATTGGGGAGCTGTGAGTACAGCTTTTTGTGCTGAAATCGTTGAAT 1038
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 900 ATTTTATAGGGACGTATTGGGGAGCTGTGAGTACAGCTTTCTGTGCTGAAATTGTTGAAT 959
Query 1039 CTGCGGATGCTTATCTGTTTGCAGGTCCGATTTTCAACGATTACAGTTCTGTTGGGTATT 1098
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 960 CTGCGGATGCTTATTTGTTTGCAGGTCCGATTTTCAACGATTACAGTTCTGTTGGGTACT 1019
Query 1099 CTCTGCTTCTCAAGAAGGAGAAGGCAATCATCGTTCAGCCTGATCGGGTTACTATCGGTA 1158
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1020 CTCTGCTTCTCAAGAAGGAGAAGGCCATCATCGTGCAGCCTGATCGGGTTACTATCGGTA 1079
Query 1159 ACGGACCTGCGTTTGGATGTGTTCTTATGAAGGATTTTCTAAGCGAGTTGGCTAAACGAA 1218
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1080 ACGGACCTGCGTTTGGGTGTGTTCTTATGAAGGATTTTCTTAGCGAGTTGGCTAAACGAA 1139
Query 1219 TTAAGCACAACAACACTTCTTATGAGAATTATCACAGGATCTATGTCCCAGAAGGAAAGC 1278
|||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||
Sbjct 1140 TTAAGCACAACAACACTTCTTACGAGAATTACCACAGGATCTTTGTCCCAGAAGGAAAGC 1199
Query 1279 CTTTGAGAGATAACCCGAATGAGTCTTTGAGGGTTAATGTACTGTTCCAACACATTCAGA 1338
|||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||| |
Sbjct 1200 CTTTGAGAGATAACCCAAATGAGCCTTTGAGGGTTAATGTGCTGTTCCAACACATTCAAA 1259
Query 1339 ATATGCTCTCTTCTGAGTCTGCTGTGCTTGCTGAGACAGGAGATTCCTGGTTCAACTGTC 1398
|||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1260 ATATGCTCTCTTCTGAAACTGCTGTGCTTGCTGAGACAGGGGATTCCTGGTTCAATTGTC 1319
Query 1399 AGAAGCTGAAGCTCCCTGAAGGATGCGGTTACGAATTCCAAATGCAGTACGGATCAATTG 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AGAAGCTGAAGCTCCCTGAAGGATGCGGTTACGAATTCCAAATGCAGTACGGATCAATTG 1379
Query 1459 GCTGGTCAGTGGGTGCTACTCTAGGCTATGCTCAAGCCATGCCAAACAGGCGTGTCATTG 1518
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1380 GTTGGTCAGTGGGTGCTACTCTAGGCTATGCTCAAGCCATGCCAAACAGTCGTGTCATTG 1439
Query 1519 CTTGTATTGGAGATGGTAGTTTCCAGGTAACCGCACAGGATGTATCTACGATGATACGGT 1578
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1440 CTTGTATTGGAGATGGTAGTTTCCAGGTAACCGCGCAGGATGTATCTACGATGATACGGT 1499
Query 1579 GTGGGCAAAAGACCATAATCTTCCTCATCAACAACGGAGGCTACACCATTGAGGTGGAAA 1638
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1500 GTGGGCAAAAGACCATAATCTTCCTCATCAACAACGGAGGCTACACAATTGAGGTGGAGA 1559
Query 1639 TTCACGATGGTCCTTACAATGTCATAAAGAACTGGAACTACACAGCTTTTGTTGAGGCCA 1698
|||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 1560 TTCACGATGGTCCTTACAATGTCATAAAGAACTGGAACTACACAGCCTTTGTCGATGCCA 1619
Query 1699 TACACAATGGAGAAGGAAAATGCTGGACTGCCAAGGTGAGATGCGAGGAGGAG-TTAGTG 1757
| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1620 TCCACAATGGAGAAGGAAAATGCTGGACTGCCAAGGTGAGATGCGAGGAGGAGCTT-GTG 1678
Query 1758 AAAGCAATCAACACGGCAACCAATGAGGAAAAAGAGAGCTTTTGTTTCATTGAAGTGATA 1817
||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1679 AAAGCGATTAACACGGCAACCAATGAGGAAAAAGATAGCTTTTGTTTCATTGAAGTGATA 1738
Query 1818 GTGCACAAAGACGATACAAGCAAGGAACTTTTGGAGTGGGGCTCTAGAGTCTCTGCTGCT 1877
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1739 GTGCACAAAGACGATACAAGCAAGGAGCTTTTGGAGTGGGGTTCTAGAGTCTCTGCTGCC 1798
Query 1878 AATAGTCGTCCCCCAAATCCGCAGTAGAGT-ATATAAATGCACTCAACTTATATATAT-T 1935
|||||||||||||||||||| ||||||||| | ||| ||||| ||||||||||||||| |
Sbjct 1799 AATAGTCGTCCCCCAAATCCTCAGTAGAGTCA-ATAGATGCAATCAACTTATATATATAT 1857
Query 1936 T-CAGATTTGGTAGTGTCTTCACCGTTCTATGTAAAGTAGTGTGGATCCTTTTACACCCA 1994
| | |||||||||| ||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct 1858 TTCC-ATTTGGTAGTTTCTTCGCCGTTTTATGTAAAGTAGTGTGTATCCTTTTACACCCA 1916
Query 1995 TCTGGATGGGaaaaaaaTGTGTGTCCCCTTGAGGATATAAACTGTTTGAGTGCCTAAATA 2054
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1917 TCTGGATGGGAAAACAATGTGTGTCCCCTTGAGGATATAAGTTGTTTGAGTGCCTAAATA 1976
Query 2055 AGAA-CTTGTTTCCTCTGCTTC 2075
| || || ||||||||||||||
Sbjct 1977 ACAAACT-GTTTCCTCTGCTTC 1997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78046912005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5