BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55000.2
Length=1129
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950152 jgi|Araly1|950152|scaffold_802039.1 1515 0.0
> Ahg950152 jgi|Araly1|950152|scaffold_802039.1
Length=940
Score = 1515 bits (820), Expect = 0.0
Identities = 894/931 (96%), Gaps = 0/931 (0%)
Strand=Plus/Plus
Query 71 CTATCTTTCTCATGGAGACGAGCTCTAACTTGTCTTCCATGGTTCGTCTTAACATTGGTG 130
|||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 10 CTATCTCTCTCATGGAGACGAGCTCTGACTTGTCTTCCAGGGTTCGTCTTAACATTGGTG 69
Query 131 GAAAGAAATTTTGTACGACCATTGATACTTTGACTATTCGTGAGCCAGACTCAATGCTCG 190
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 70 GAAAGAAATTTTGTACGACCATTGATACTTTGACTATCCGTGAGCCAGACTCAATGCTCG 129
Query 191 CAGCGATGTTTAGTGGTCGACATGCAATGTGCCAGGAATCCAAAAAGGGATATGTATTCA 250
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 130 CAGCGATGTTTAGTGGTCGACATGCAATGTGCCAGGAATCCAAGAAGGGATATGTATTCA 189
Query 251 TAGATAGGGATGGGAAGCACTTCCGTCATATTTTAAATTGGTTGCGTGATGGCGTTATTC 310
|||| |||||||| |||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 190 TAGACAGGGATGGAAAGCACTTCCGTCATATTCTAAATTGGTTGCGTGATGGCGTTGCTC 249
Query 311 CTAGTCTGTCAGATCCTGATTGTTCTGAACTTTTGCGGGAAGCAGACTACTATCAGCTTC 370
| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 250 CAAGTTTGTCAGATCCTGATTGTTCTGAACTTTTGCGCGAAGCAGACTACTATCAGCTTC 309
Query 371 TTGGACTGAAAGATGGAATAAAAGATTCGAGAAAAGAAGTTGGTGAAGTAGAAGCTGAAT 430
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 310 TTGGGCTGAAAGATGGAATAAAAGATTCGAGAAGAGAAGTTGGTGAAGTAGAAGCTGAAT 369
Query 431 TAACGCGTATAGATATCATCAAATGTATACAAACCGAAAGAGTCAGGTTCCGAGGAGTTA 490
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 370 TAACGCGTATAGATATCATCAAATGTATACAATCCGAAAGAGTCAGGTTCCGAGGAGTTA 429
Query 491 ATCTTTCTGGAATCGATCTTTCTAAACTGGATCTATCCCTTGTGGATTTCAGCTATGCTT 550
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 430 ATCTTTCTGGAATCGATCTTTCTAAACTAGATCTATCCCTTGTGGATTTCAGCTATGCTT 489
Query 551 GTCTCAGGAATGTGTTTTTCTCTCGTACAAATCTTCAATGTGCCAAATTTCGGAATGCTG 610
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 490 GTCTCAGGAATGTGTTTTTCTCTCGTACAAATCTTCAGTGTGCCAAATTTCGGGATGCTG 549
Query 611 ATGCAGAAGGCTCCATCTTTCACAATGCTATTTTGCGCGAGTGTGAGTTTACCAGCGCAA 670
|||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 550 ATGCTTCAGGCTCCATCTTTCACAATGCTATTTTGCGCGAGTGTGAGTTTACCGGTGCAA 609
Query 671 ATCTTAGAGGAGCGTTGTTAGCTGGTACAAATCTTCAGAGTGCAAATCTACAAGATGCCT 730
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 610 ATCTTAGAGGAGCGTTGTTAGCTGGTACAAATCTTCAGAGTGCAAATTTACAAGATACCT 669
Query 731 GCTTAGTGGGCTGCAGCTTCTGTGGTGCAGATCTCCGCACTGCACACTTGCAGAATGCAG 790
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 670 GCTTAGTGGATTGCAGCTTCTGTGGTGCTGATCTCCGCACTGCACACTTGCAGAATGCGG 729
Query 791 ACCTTACGAATGCCAACTTAGAAGGAGCAAATCTAGAAGGTGCAAATTTGAAGGGTGCAA 850
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 730 ACCTTACAAATGCCAACTTAGAGGGAGCAAATCTAGAAGGTGCAAATTTGAAGGGTGCAA 789
Query 851 AGTTGAGTAATGCCAACTTCAAAGGAGCAAACCTTCAACGAGCTTACTTGAGGCATGTGA 910
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 AATTGAGTAATGCCAACTTCAAAGGAGCAAACCTTCAACGAGCTTACTTGAGGCATGTGA 849
Query 911 ATCTGCGAGAAGCGCATATGGAAGGAGCAAACCTCGGTGGTGCTAATATGACCGGTGCTA 970
||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||
Sbjct 850 ATCTGCGAGAAGCGCATTTGGAAGGAGCAAACCTCGGTGGCGCTAATATGACTGGTGCTA 909
Query 971 TCCGATAAACTCCATTTGTTCAGACTGACTG 1001
| |||||||||||||||||||||||||||||
Sbjct 910 TTCGATAAACTCCATTTGTTCAGACTGACTG 940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42087700368
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5