BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55050.1
Length=1534
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495588 jgi|Araly1|495588|fgenesh2_kg.8__1404__AT5G55050.1 2073 0.0
Ahg952639 jgi|Araly1|952639|scaffold_98900002.1 305 5e-82
> Ahg495588 jgi|Araly1|495588|fgenesh2_kg.8__1404__AT5G55050.1
Length=1330
Score = 2073 bits (1122), Expect = 0.0
Identities = 1262/1330 (95%), Gaps = 7/1330 (1%)
Strand=Plus/Plus
Query 39 AAAAACATGCCGACGAACAACACTCCGTTCCTCACTATTTTTCTCCTCTTTCTTGGTTTA 98
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1 AAAAACATGCCGACGAACAACACACCGTTCCTCACTATCTTTCTCCTCTTTCTTGGTTTA 60
Query 99 CTCCGGTTCGATTCATTTCCCGGTTTAGAAGCTGCAACCGGGAAATTAGCTTCGATTCCA 158
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCCGGTTCGATTCATTTCCCGGCTTAGAAGCTGCAACCGGGAAATTAGCTTCGATTCCA 120
Query 159 GGATTATACGTGTTCGGAGATTCGTTAGTTGATGCCGGCAACAATAATTACTTACCAATT 218
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||| | ||
Sbjct 121 GGATTATACGTGTTCGGAGATTCGTTAGTTGATGCCGGAAACAATAATCACTTACTACTT 180
Query 219 TCAATATCTAAAGCTAATTATCCACATAACGGCGTCGATTTTCCGAACAAGAAACCTACC 278
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 181 TCAATATCTAAAGCTAACTATCCACATAACGGCGTTGATTTTCCGAACAAGAAACCCACC 240
Query 279 GGAAGATTCTGTAACGGCAAGAACGCCGCCGATGCTATCGCTGAGAAATTTGGTTTACCG 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGAAGATTCTGTAACGGCAAGAACGCCGCCGATGCTATCGCTGAGAAATTTGGTTTACCG 300
Query 339 TTACCACCTCCCTATCTCTCACTTAGAGGCTTACTAAAAAGGGAGAAGAGAAAATCTGCC 398
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 TTACCGCCTCCGTATCTCTCACTTAGAGGCTTACTAAAAAGGGAGAAGAGAAAATCCGCC 360
Query 399 GCCGTGACTGGTGTGAATTTTGCTTCCGGTGGAGCCGGAATCTTCAACAGTTCCGACCAA 458
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 361 GCCGTGACAGGTGTGAATTTTGCTTCCGGTGGAGCTGGAATCTTCAACAGTTCCGACGAA 420
Query 459 AAACTTGGACAAGCTATTCCTTTATCCAAGCAAGTCAACAATTGGCTCTCTATTCATGAA 518
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 AAACTTGGACAAGGTATTCCTTTATCAAAGCAAGTCAACAATTGGCTCTCTATTCATGAA 480
Query 519 GAAGTCATGAAACTTGAACCATCCGCAGCACAGCTTCACCTATCCAAATCTCTATTCACT 578
||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 481 GAACTCATGAAACTTGAACCATCCGAAGCACAGATTCACCTATCCAAATCTCTATTCACT 540
Query 579 GTTGTCATAGGAAGTAACGATCTTTTCGATTACTTTGGATCGTTCAAACTCCGACGCCAG 638
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 541 GTTGTCATAGGAAGTAACGATCTTTTCGATTACTTTGGATCATTCAAACTCCGACGACAG 600
Query 639 AGCAATCCTCAACAATATACACAATTAATGGCTGATAAACTCAAAGAGCAATTGAAGAGA 698
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 AGCAATCCTCAACAATATACACAATTAATGGCTGATAAACTCAAAGAGCAATTAAAGAGA 660
Query 699 ATTCACGATAGTGGAGCGCGTAGATTCCTTATCATCGGGGTAGCACAAATTGGTTGCACA 758
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 661 ATTCACGATAGTGGAGCGCGTAGATTCCTTATAATCGGGGTAGCACAGATCGGTTGCACA 720
Query 759 CCGGGAAAAAGAGCGAAGAACTCGACACTCCATGAATGTGACGAAGGGGCAAACATGTGG 818
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 721 CCGGGAAAAAGAGCGAAGAACTCGACAATCCATGAATGTGACGAAGAGGCAAACATGTGG 780
Query 819 TGCTCTTTGTACAACGAAGCTCTAGTAAAGATGCTGCAACAACTCAAACAAGAATTACAA 878
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 781 TGCTCTTTGTACAACGAAGCTCTAGTAAAGATGCTGCAACAACTCAAACAAGAGTTGCAA 840
Query 879 GGCTCAATAACTTACACTTACTTTGATAACTACAAGTCCTTACATGACATTATTTCCAAC 938
|||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 841 GGCTCATTGACTTACACTTACTTTGATAACTACAAGTCCTTACATGACATTATCTCCAAC 900
Query 939 CCTGCCCGTTACGGTTTTGCTGACGTTACATCTGCGTGTTGTGGAAATGGGGAATTGAAC 998
||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 901 CCTGCTCGTTACGGTTTTGCTGACGTGACATCAGCGTGTTGTGGAAATGGGGAATTAAAC 960
Query 999 GCAGACCTTCCTTGTCTGCCTTTGGCGAAGTTATGTTCAGACAGAACCAAACATCTTTTT 1058
||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||
Sbjct 961 GCAGACCTTCCTTGTCTTCCTTTGGCAAAGTTATGTTCAGACAGAACCAAATATCTTTTC 1020
Query 1059 TGGGATCGCTATGGCCATCCCACTGAAGCTGCTGCTCGGACCATCGTCGATCTTATGTTG 1118
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1021 TGGGATCGCTACGGTCATCCCACAGAAGCTGCTGCTCGGACCATCGTCGATCTTATGTTG 1080
Query 1119 ACTGATGATACACATTACTCATCTCCTATAACTCTTACTCAGTTGGTCTCTACATGATCA 1178
||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1081 ACTGATGATTCACACTACTCATCTCCTATAACCCTTACTCAGTTGGTCTCTACATGATCA 1140
Query 1179 ATAATACACACGGCTTCGtttttttGGGAAGAGTA---CATAATCAAGTAGACAAATGGG 1235
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1141 ATAATACACACGGCTTCGTTTTTTTGGGAAGAGTAGTACATAATCAAGTAGACAAATGGG 1200
Query 1236 ATTTGGAAACTTGATTTGTAATCAAGTATACGTTACTAAATTTGTTACCAATGAAATATA 1295
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1201 ATTTGGAAACTTGATTTGTAATCAAGTATACGTTACGAAATTTGTTACTTGTGAAATATA 1260
Query 1296 TAAGTTTCTTAtttttt--t-t-agtttactagtttttctaagttttaccggtttagtta 1351
||||||| ||| | | | | ||||||| |||||||||||||||||||||||||||
Sbjct 1261 TAAGTTTTTTAAAAAATAATCTCAATTTACTACTTTTTCTAAGTTTTACCGGTTTAGTTA 1320
Query 1352 aatttaATGA 1361
||||||||||
Sbjct 1321 AATTTAATGA 1330
> Ahg952639 jgi|Araly1|952639|scaffold_98900002.1
Length=244
Score = 305 bits (165), Expect = 5e-82
Identities = 185/195 (95%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 1003 ACCTTCCTTGTCTGCCTTTGGCGAAGTTATGTTCAGACAGAACCAAACATCTTTTTTGGG 1062
||||||||||||| |||||||| |||||||||||||||||||||||| ||||||| ||||
Sbjct 50 ACCTTCCTTGTCTTCCTTTGGCAAAGTTATGTTCAGACAGAACCAAATATCTTTTCTGGG 109
Query 1063 ATCGCTATGGCCATCCCACTGAAGCTGCTGCTCGGACCATCGTCGATCTTATGTTGACTG 1122
||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 110 ATCGCTACGGTCATCCCACAGAAGCTGCTGCTCGGACCATCGTCGATCTTATGTTGACTG 169
Query 1123 ATGATACACATTACTCATCTCCTATAACTCTTACTCAGTTGGTCTCTACATGATCAATAA 1182
||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 170 ATGATTCACACTACTCATCTCCTATAACCCTTACTCAGTTGGTCTCTACATGATCAATAA 229
Query 1183 TACACACGGCTTCGt 1197
|||||||||||||||
Sbjct 230 TACACACGGCTTCGT 244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57440089460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5