BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G55070.1 Length=1998 Score E Sequences producing significant alignments: (Bits) Value Ahg495590 jgi|Araly1|495590|fgenesh2_kg.8__1406__AT5G55070.1 2686 0.0 Ahg492108 jgi|Araly1|492108|fgenesh2_kg.7__1541__AT4G26910.1 1284 0.0 > Ahg495590 jgi|Araly1|495590|fgenesh2_kg.8__1406__AT5G55070.1 Length=1787 Score = 2686 bits (1454), Expect = 0.0 Identities = 1682/1787 (94%), Gaps = 36/1787 (2%) Strand=Plus/Plus Query 2 AAGGAAATAAGACACGTGTAAAATCCTCTGAATTTTCCATATTCTTTCGTGAC-TTGCTC 60 |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 1 AAGGAAATAAGACACGTGTAAAATCCTCTGAATTTTCCATATTC-TTCGTGACTTTGCTC 59 Query 61 AAAGCAGAGAAAGGTCATATGCTTTTCTCCAGTTCCTCTCTCTGTCTATCTCTCTCCTCC 120 ||||| |||||||||||||||||||||||||| | || ||||||||||| Sbjct 60 AAAGCTGAGAAAGGTCATATGCTTTTCTCCAG----------T-TC---CTCTCTCCTCC 105 Query 121 TTCAATAATTTCTGCAAACCCTAACTTTCTCATTCGGCGCTCAAGTTTC-TCTCCACC-C 178 |||||||||||||||||||||||| |||||||||||||||||||||||| ||| | || | Sbjct 106 TTCAATAATTTCTGCAAACCCTAAATTTCTCATTCGGCGCTCAAGTTTCTTCT-CTCCAC 164 Query 179 CTTCGAGATTTGGTGCGATGATGTTGCGTGCTGTTTTTAGGAGAGCTTCCATTAGAGGCT 238 | || ||||||||||||||||||||||||||| || ||||||||||||||| ||||||| Sbjct 165 C-TCTAGATTTGGTGCGATGATGTTGCGTGCTCTTATTAGGAGAGCTTCCACGAGAGGCT 223 Query 239 CTTCTTCTGCTTCGGGATTGGGAAAATCAT-TGCAATCCTCTCGTGTTGCAGTGTCTGCT 297 |||||| ||||||||||||||||||||| | ||||||| |||||||||| || |||||| Sbjct 224 CTTCTTGTGCTTCGGGATTGGGAAAATC-TCTGCAATCTTCTCGTGTTGTAGCGTCTGCC 282 Query 298 CAATTTCATTCTGTTTCAGCAACAGAGACGTTGGTGCCTCGTGGAAACCATGCTCATAGC 357 |||||||||||||||||||| || ||||||||||| ||||||||||||||||||| |||| Sbjct 283 CAATTTCATTCTGTTTCAGCTACTGAGACGTTGGTACCTCGTGGAAACCATGCTCGTAGC 342 Query 358 TTCCATCACCGTTCTTGTCCAGGGTGTCCAGACTGTTCAAGGACTATTATCAACGGTTAC 417 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 343 TTCCATCACCGTTCTTGTCCAGGGTGTCCAGACTGTTCAAGGACTGTTTTCAACGGTTAC 402 Query 418 CAAGGCACAGCCCTGCAAAGATGGGTCAGGCCCTTTTCATCTGATAGTGGGGATGTCGTG 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 403 CAAGGCACAGCCCTGCAAAGATGGGTCAGGCCCTTTTCATCTGATAGTGGGGATGTCGTG 462 Query 478 GAAGCTGTTGTGCCACACATGGGTGAATCAATCACTGATGGCACCCTAGCCGCCTTTCTG 537 ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||| Sbjct 463 GAAGCTGTTGTGCCACACATGGGTGAATCAATCACCGATGGAACCCTAGCCACCTTTCTG 522 Query 538 AAGAAACCTGGCGATAGAGTAGAAGCTGATGAGGCTATTGCACAAATTGAAACTGACAAG 597 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 523 AAGAAACCTGGTGACAGAGTAGAAGCTGATGAGGCTATTGCACAAATTGAAACTGACAAG 582 Query 598 GTTACAATAGATATTGCTAGCCCAGCAAGTGGTGTGATCCAAGAGTTTCTAGTCAAGGAA 657 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 583 GTTACAATAGATATTGCTAGCCCAGCAAGTGGAGTGATCCAAGAGTTTCTAGTCAAGGAA 642 Query 658 GGAGATACTGTTGAACCAGGAAACAAGGTTGCAAGAATTTCTACATCTGCGGATGCTGTG 717 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 643 GGAGACACTGTTGAACCAGGAAACAAGGTTGCTAGAATTTCTACATCTGCGGATGCTGTG 702 Query 718 TCTCATGTGGCACCCTCAGAAAAGGCACCAGAGAAACCTGCTCCCAAGCCTTCTCCTCCT 777 |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 703 TCTCATGTTGCACCCTCAGAAAAGACACCAGAGAAACCTGCTCCCAAGCCTTCTCCTCCT 762 Query 778 GCTGAGAAGCCCAAAGTTGAAAGTACCAAAGTTGCAGAGAAACCCAAGGCACCATCACCG 837 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 763 GCTGAGAAGCCCAAAGTTGAAAGTACTAAAGTTGCAGAGAAACCCAAGGCACCATCACCG 822 Query 838 CCACCTCCACCGCCATCCAAACAGTCAGCTAAAGAACCGCAGCTTCCACCTAAGGATAGG 897 | ||| |||||||| | |||||||||||||||||||||||||| || |||||||||||| Sbjct 823 CAACCGCCACCGCC--C-AAACAGTCAGCTAAAGAACCGCAGCTCCCTCCTAAGGATAGG 879 Query 898 GAAAGACGGGTTCCTATGACAAGACTTCGCAAACGGGTGGCAACTAGGTTGAAAGACTCT 957 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 880 GAAAGACGGGTTCCTATGACAAGACTTCGCAAACGGGTGGCAACTAGGCTGAAAGACTCT 939 Query 958 CAGAACACTTTTGCGTTGCTGACAACTTTCAATGAAGTTGATATGACTAATCTGATGAAG 1017 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 940 CAAAACACTTTTGCTTTGCTGACAACTTTCAATGAAGTTGATATGACTAATCTGATGAAG 999 Query 1018 CTCCGATCTCAGTACAAGGATGCTTTTCTTGAAAAGCACGGAGTGAAGTTGGGGCTTATG 1077 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1000 CTCCGATCTCAGTACAAGGATGCTTTTTTTGAAAAGCACGGAGTGAAGTTGGGGCTTATG 1059 Query 1078 TCTGGTTTCATTAAGGCTGCTGTTAGTGCCCTCCAGCACCAACCTGTAGTAAATGCAGTT 1137 |||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1060 TCTGGTTTCATTAAAGCCGCTGTTAGCGCCCTCCAGCACCAACCAGTAGTAAATGCAGTT 1119 Query 1138 ATCGATGGAGATGATATCATTTACAGAGACTACGTGGATATCAGTATCGCTGTTGGTACC 1197 ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1120 ATCGACGGGGACGATATCATTTACAGAGACTACGTGGATATCAGTATCGCTGTTGGTACC 1179 Query 1198 TCTAAGGGTCTTGTAGTTCCAGTCATAAGAGATGCTGACAAAATGAACTTTGCTGACATA 1257 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1180 TCTAAGGGTCTTGTGGTTCCAGTCATAAGAGATGCTGATAAAATGAACTTTGCTGACATA 1239 Query 1258 GAGAAAACAATAAACGGTCTCGCTAAGAAGGCTACTGAAGGAACCATATCAATCGATGAG 1317 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 1240 GAGAAAACAATAAACGGTCTTGCTAAGAAGGCTAATGAAGGAACCATATCAATCGACGAG 1299 Query 1318 ATGGCAGGAGGATCATTCACAGTATCAAATGGTGGTGTCTATGGAAGTCTTATAAGCACT 1377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1300 ATGGCAGGAGGATCATTCACAGTATCAAATGGTGGTGTCTATGGAAGTCTTATAAGCACT 1359 Query 1378 CCTATCATCAACCCTCCTCAGTCTGCTATTCTTGGAATGCATTCAATTGTGCAACGTCCA 1437 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1360 CCTATCATCAACCCTCCTCAGTCTGCTATTCTTGGAATGCATTCGATTGTGCAACGTCCA 1419 Query 1438 ATGGTTGTGGGAGGAAGCGTAGTTCCGAGGCCAATGATGTATGTCGCGCTGACTTACGAT 1497 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 1420 ATGGTTGTGGGAGGAAGCGTAGTACCGAGGCCAATGATGTATGTCGCACTGACTTACGAT 1479 Query 1498 CATAGGCTAATTGATGGAAGAGAGGCTGTGTATTTCTTGCGCCGTATTAAGGATGTTGTG 1557 |||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 1480 CATAGGCTGATTGATGGAAGAGAGGCTGTGTATTTCCTGCGCCGTATCAAGGATGTTGTG 1539 Query 1558 GAAGATCCTCAGAGGCTTCTTCTCGACATATGATAAAGATCCAAGACAGAAGAGATCATA 1617 ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 1540 GAAGATCCTCAGAGGCTTCTTCTCGACATATGATAAAGATCTAAGACAGGAGAGATCATA 1599 Query 1618 AGTTTCTGTCTTTTTACCAGTTTCCTTTCAGGT--A---AAACCATTACGGATACTGCAA 1672 ||||||||||||||||||||||||| ||||||| | |||||| ||| |||| ||||| Sbjct 1600 AGTTTCTGTCTTTTTACCAGTTTCCGTTCAGGTTCAGGTAAACCACTACAGATATTGCAA 1659 Query 1673 TCTGCAAATGATGCTT-TGA-AAAAAGAACGAAACtttttttttGGAGTTTTCTTAATAG 1730 |||||||||||| ||| ||| ||||| ||||||||||||||| |||||| |||||||| Sbjct 1660 TCTGCAAATGATACTTCTGAGAAAAA-AACGAAACTTTTTTT--GGAGTTC-CTTAATAG 1715 Query 1731 TTTTAAGAGTTTTTGCCGGGCGAGGAAAGCATCGGTGTATTGAGTTT 1777 || |||||||||| ||||||||||||||||||||||||| ||||| Sbjct 1716 TTCCAAGAGTTTTTACCGGGCGAGGAAAGCATCGGTGTATACAGTTT 1762 Score = 63.9 bits (34), Expect = 4e-09 Identities = 34/34 (100%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 1798 ATACAGTTTGAACAAAATGTTACAATTTTGACTT 1831 |||||||||||||||||||||||||||||||||| Sbjct 1754 ATACAGTTTGAACAAAATGTTACAATTTTGACTT 1787 > Ahg492108 jgi|Araly1|492108|fgenesh2_kg.7__1541__AT4G26910.1 Length=1759 Score = 1284 bits (695), Expect = 0.0 Identities = 1194/1431 (83%), Gaps = 49/1431 (3%) Strand=Plus/Plus Query 183 GAGATTTGGTGC-GATGATGTTGCGTGCTGTTTTTAGGAGAGCTTCCATTAGAGGCTCTT 241 |||||| ||| | |||||||||||||||||| | ||||||||| ||| || |||||||| Sbjct 87 GAGATTCGGTACAAATGATGTTGCGTGCTGTTATAAGGAGAGCTGCCAGTAAAGGCTCTT 146 Query 242 CTTCTGCTTCGGGATTGGGAAAATCATTGCAATCCTCTCGTGTTGCAGTGTC-TGCTCAA 300 | || ||||| ||| ||||||||| ||||||| ||||||||||| | || | | ||| Sbjct 147 C-TC--CTTCGTTATTCGGAAAATCACTGCAATCTTCTCGTGTTGCTGCATCTTCCCCAA 203 Query 301 --TTTCAT-TCTGTTTCAGCAACAGAGACGTTGGTGCCTCGTGGAAACCATGCTCATAGC 357 || | | | ||||| ||||| | | || ||| | ||||||| ||||||| |||| Sbjct 204 GCTTGC-TAAGAGGTTCAGAAACAGGGGCATTTCTGCATTGTGGAAATCATGCTCGTAGC 262 Query 358 TTCCATCACCGTT-C-TTGTCCAGGGTGTCCAGACT-GTTCAAGGACTATTATCAACG-G 413 || ||| ||| || | ||| ||| | | | ||| | | | | | |||| || | Sbjct 263 TTTCATAACC-TTGCTTTG-CCA-GCAG-GGA-ACTCGGGC-ATCTCGA-GATCAGCGAG 315 Query 414 -TTACCAAGGCAC-AGCCCTGCAAAGATGGGTCAGGCCCTTTTCATCTGATAGTGGGGAT 471 ||| | | | |||| ||||||||||||||||| ||||||||||| ||||| ||| Sbjct 316 TTTA-GTTTCCTCTA-CCCTACAAAGATGGGTCAGGCCTTTTTCATCTGAAAGTGGAGAT 373 Query 472 GTC-GTGGAAGCTGTTGTGCCACACATGGGTGAATCAATCACTGATGGCACCCTAGCCGC 530 | ||||||||||||||||| || ||||| ||||||||||| ||||||||| ||||| | Sbjct 374 -ACTGTGGAAGCTGTTGTGCCTCATATGGGGGAATCAATCACCGATGGCACCTTAGCCAC 432 Query 531 CTTTCTGAAGAAACCTGGCGATAGAGTAGAAGCTGATGAGGCTATTGCACAAATTGAAAC 590 |||||||||||||||||| || ||||| | ||||||||||||||||||||||||||||| Sbjct 433 CTTTCTGAAGAAACCTGGTGAGAGAGTCCAGGCTGATGAGGCTATTGCACAAATTGAAAC 492 Query 591 TGACAAGGTTACAATAGATATTGCTAGCCCAGCAAGTGGTGTGATCCAAGAGTTTCTAGT 650 ||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 493 TGATAAGGTGACAATAGATATTGCTAGCCCAGCAAGTGGTGTAATCCAAGAGTTTCTAGT 552 Query 651 CAAGGAAGGAGATACTGTTGAACCAGGAAACAAGGTTGCAAGAATTTCTACA-TCTGCGG 709 ||| ||||||||||| || |||||||||| |||||| || | || || | | |||| || Sbjct 553 CAAAGAAGGAGATACGGTAGAACCAGGAACCAAGGTCGCTATTATATC-AAAGTCTGAGG 611 Query 710 ATGCTGTGTCTCATGTGGCACCCTCAGAAAAGGCACCAGAGAAACCTGCTCCCAAGCCTT 769 |||||| |||||||| | ||||| | ||| ||||||| | ||| | ||||||||| Sbjct 612 ATGCTGCATCTCATGTTACCCCCTCCCAGAAGATACCAGAGGCATCTGATGCCAAGCCTT 671 Query 770 CTCCTCCTGC------T--G-AGAAGCCCAAAGTTGAAAGTAC-CAAAGTTGCAGAGAAA 819 |||||||||| | | ||||||||||||| |||||| | | || ||||||||| Sbjct 672 CTCCTCCTGCTGAAGATAAGCAGAAGCCCAAAGTGGAAAGTGCTC-CTGTAGCAGAGAAA 730 Query 820 CCCAAGGCACCATCACCGCCACCTCCACCGCCATCCAAACAGTCAGCTAAAGAACCGCAG 879 ||||| ||||||| || || ||||| ||| ||||||| || ||||||||||||||| Sbjct 731 CCCAAAGCACCAT--CC-TCA---CCACCTCCACCCAAACAATCTGCTAAAGAACCGCAG 784 Query 880 CTTCCACCTAAGGATAGGGAAAGACGGGTTCCTATGACAAGACTTCGCAAACGGGTGGCA 939 || || |||||||| || ||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 785 CTCCCTCCTAAGGAAAGAGAAAGACGGGTTCCTATGACAAGACTTCGTAAAAGGGTTGCA 844 Query 940 ACTAGGTTGAAAGACTCTCAGAACACTTTTGCGTTGCTGACAACTTTCAATGAAGTTGAT 999 || || |||||||||||||| || ||||| || ||||||||||||||||||||||||||| Sbjct 845 ACAAGATTGAAAGACTCTCAAAATACTTTCGCATTGCTGACAACTTTCAATGAAGTTGAT 904 Query 1000 ATGACTAATCTGATGAAGCTCCGATCTCAGTACAAGGATGC-TTTTCTTGAAAAGCACGG 1058 ||||| ||| |||||||||||||||| || ||||||||||| |||| | ||||| || || Sbjct 905 ATGACAAATTTGATGAAGCTCCGATCCCAATACAAGGATGCATTTTAT-GAAAAACATGG 963 Query 1059 AGTGAAGTTGGGGCTTATGTCTGGTTTCATTAAGGCTGCTGTTAGTGCCCTCCAGCACCA 1118 |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || Sbjct 964 AGTGAAGTTGGGGCTTATGTCTGGATTCATTAAAGCTGCTGTTAGTGCCCTCCAGCATCA 1023 Query 1119 ACCTGTAGTAAATGCAGTTATCGATGGAGATGATATCATTTACAGAGACTACGTGGATAT 1178 ||| || |||||||||||||||||||| ||||||||||| ||||||||||| |||||||| Sbjct 1024 ACCAGTTGTAAATGCAGTTATCGATGGGGATGATATCATATACAGAGACTATGTGGATAT 1083 Query 1179 CAGTATCGCTGTTGGTACCTCTAAGGGTCTTGTAGTTCCAGTCATAAGAGATGCTGACAA 1238 |||||| |||||||||||||||||||| |||||||| ||||||||||||| |||||| || Sbjct 1084 CAGTATTGCTGTTGGTACCTCTAAGGGACTTGTAGTACCAGTCATAAGAGGTGCTGATAA 1143 Query 1239 AATGAACTTTGCTGACATAGAGAAAACAATAAACGGTCTCGCTAAGAAGGCTACTGAAGG 1298 |||||||||||| || |||||||| || |||||| || || |||||||| | |||||| Sbjct 1144 AATGAACTTTGCCGAGATAGAGAAGACGATAAACACACTTGCGAAGAAGGCAAATGAAGG 1203 Query 1299 AACCATATCAATCGATGAGATGGCAGGAGGATCATTCACAGTATCAAATGGTGGTGTCTA 1358 ||||||||| || ||||||||||| |||||||||||||| || |||||||| |||||||| Sbjct 1204 AACCATATCCATAGATGAGATGGCTGGAGGATCATTCACCGTTTCAAATGGCGGTGTCTA 1263 Query 1359 TGGAAGTCTTATAAGCACTCCTATCATCAACCCTCCTCAGTCTGCTATTCTTGGAATGCA 1418 ||||||||| ||||||||||| ||||| |||||||||||||||||||| || || ||||| Sbjct 1264 TGGAAGTCTCATAAGCACTCCGATCATTAACCCTCCTCAGTCTGCTATACTCGGTATGCA 1323 Query 1419 TTCAATTGTG-CAACGTCCAATGGTTGTGGGAGGAAGCGTAGTTCCGAGGCCAATGATGT 1477 || |||||| || |||||||||||||| |||||||||||||| || || |||||||||| Sbjct 1324 CTCGATTGTGTCA-CGTCCAATGGTTGTAGGAGGAAGCGTAGTGCCAAGACCAATGATGT 1382 Query 1478 ATGTCGCGCTGACTTACGATCATAGGCTAATTGATGGAAGAGAGGCTGTGTATTTCTTGC 1537 | ||||| || || || ||||| ||||| |||||||| ||||||||||| || ||| ||| Sbjct 1383 ACGTCGCACTTACGTATGATCACAGGCTGATTGATGGTAGAGAGGCTGTCTACTTCCTGC 1442 Query 1538 GCCGTATTAAGGATGTTGTGGAAGATCCTCAGAGGCTTCTTCTCGACATAT 1588 ||||| | |||||||||||||| ||||| || ||||||||||| ||||||| Sbjct 1443 GCCGTGTCAAGGATGTTGTGGAGGATCCACAAAGGCTTCTTCTTGACATAT 1493 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75113963140 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5