BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G55100.2 Length=2893 Score E Sequences producing significant alignments: (Bits) Value Ahg495592 jgi|Araly1|495592|fgenesh2_kg.8__1408__AT5G55100.1 3834 0.0 Ahg359633 jgi|Araly1|359633|fgenesh1_pg.C_scaffold_527000001 1471 0.0 > Ahg495592 jgi|Araly1|495592|fgenesh2_kg.8__1408__AT5G55100.1 Length=2636 Score = 3834 bits (2076), Expect = 0.0 Identities = 2407/2561 (94%), Gaps = 45/2561 (2%) Strand=Plus/Plus Query 109 ATCACACAATGGATCTAGAGATTGTTGGTCGTCACGCTCTCTTTTTCGACGATGATTCGA 168 |||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 1 ATCACACAATGGATCTGGAGATTGTTGGTCGTCACGCTCTCTTTTTTGACGACGATTCGA 60 Query 169 TGGCAACGTTTGTCAACTCTCCGACGGCGCTCGTTGACTGGAACAGCCTCTTTATTGACC 228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TGGCAACGTTTGTCAACTCTCCGACGGCGCTCGTTGACTGGAACAGCCTCTTTATTGACC 120 Query 229 GCTACGATGTTCGTCAtctcctctcttctcctcctcctccACGTATCAAACGCCGTCGTC 288 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 121 GCTACGATGTTCGTCATCTCCTCTCTTCTCCTCCTCCCCCACGTATCAAACGCCGTCGTC 180 Query 289 CGAATTCAAACGATGCTGACTTGGAATCGGAGCTCGATCACGAGCGTTATCTAGATTTAC 348 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 181 CGAATTCAAACGATGCTGACTTGGAATCGGAGCTCGATCACGAGCGTTATTTTGATTTAC 240 Query 349 CGTCGGAATCTCCATCTCCGTCGGATGATGATGAACACGATATGAATGAGGATTCAGCAA 408 ||||||||||||||||||||||||||||||| | | ||||||||||||| | |||||||| Sbjct 241 CGTCGGAATCTCCATCTCCGTCGGATGATGA-G-A-ACGATATGAATGATGTTTCAGCAA 297 Query 409 ATACAAAT-GCGGATGGTTATCGTGCTGTCTCTTTTTCATATGGAAGCTCTAGTGATGTC 467 |||||||| || ||||||||||| |||||| | ||| |||| |||||||| ||||||||| Sbjct 298 ATACAAATGGC-GATGGTTATCGCGCTGTCCCCTTTGCATACGGAAGCTCCAGTGATGTC 356 Query 468 AATGACCAGAAAAATGCTGCTGATATGGAATCTGGATTTCACCCGCCTTTCCCCGTGCCT 527 | ||||||| ||| | ||||||||||| |||||||||||| |||||||||||||||||| Sbjct 357 AGTGACCAG--AAA-GATGCTGATATGGGATCTGGATTTCAGCCGCCTTTCCCCGTGCCT 413 Query 528 GATTACTTACGTCAAAACCTGCCTCCAACTGAGAAATTACATCAGATTATCACTAGGACT 587 ||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 414 GATTATTTACTTCAAAACCTGCCTCCAACTGAGAAATTACATCAGATCATCACTAGGACG 473 Query 588 TCAAGTTTTGTAAGCAAACACGGTGGGCAATCTGAAATTGTCTTGAGAGTCAAACAAGGA 647 ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 474 TCAAGCTTTGTAAGCAAACATGGTGGGCAATCTGAAATCGTCTTGAGAGTCAAACAAGGA 533 Query 648 GACAACCCTACATTTGGGTTCCTAATGCCAGACCATCATCTTCACCTTTACTTTAGGTTT 707 | ||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||| Sbjct 534 GGCAACCCTACATTTGGGTTCTTGATGCCAGACCATCATCTTCACCCTTACTTTAGGTTT 593 Query 708 CTTGTTGACCATCAAGAGCTTTTGACAGGAAAGTCTTCTGTAGAAGAGAAAAAGAACGAA 767 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 594 CTTGTTGACCATCAAGAGCTTTTGACGGGAAAGTCTTCTGTAGAAGAGAAAAAGAACGAA 653 Query 768 AGTGAGAAGGATGGTGGAGCTTTGTCATTGCTTGGTTCGGTTTATGGGACTGTAGAAGAT 827 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 654 AGTGAGAAGGATGGTGGAGCTTTGTCCTTGCTTGGTTCGGTTTATGGGACTGTAGAAGAT 713 Query 828 GAAGATGCTAACGAAGAGTCTGCAAACGACTCCAAAACAAGTGAGTCCGCCAAAGGTGAT 887 |||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||| Sbjct 714 GAAGATGCTAACGAAGAGTCTGCAAATGACTCTAAAACAAGTGAGTCTGCCAAAGGCGAT 773 Query 888 GATGGTGTTAAGGTAACTGATTCCAATGGACCTGAAGGGTCGAAAGGAGCTGCAAAGATT 947 |||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||| Sbjct 774 GATGGTGTTAAGGTAACTGATTCCAATGGACCCGAATGGTCGAAAGGAGCTGTAAAGATT 833 Query 948 GCCTCTAAGCATTCTCTGCCGTTGAATGATCATGCATCTTTCATAAAAAGAAATCCCTCT 1007 |||||||||||||||||||||||||||||||| |||||| || ||||||||||||| ||| Sbjct 834 GCCTCTAAGCATTCTCTGCCGTTGAATGATCAGGCATCTGTCGTAAAAAGAAATCCTTCT 893 Query 1008 GTCAGCGCAGTAAATGTTGTAGAGAAGAAGCAG----AT-C-------AA---TACAGAA 1052 ||||||||||||||||||||||||| ||||||| || | || ||||||| Sbjct 894 GTCAGCGCAGTAAATGTTGTAGAGAGGAAGCAGATCAATACAGAAGATAATGCTACAGAA 953 Query 1053 AAACTTGTGACGTCTGATAAGTCGCAACCCAAGCTTGAACTGCAGATTGTGGAGCCGACT 1112 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 954 AAACTTTTGACGTCTGATAAGTCGCAACCCAAGCTTGAACTGCAGATTGTGGAGCCGTCT 1013 Query 1113 ACTGAGATGAAAAGAGTGATTGATAAGATAGTAGACTTCATTCAAAAGAACGGGAAAGAA 1172 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1014 ACTGAGATGAAAAGAGTGATTGATAAGATAGTAGACTTCATCCAAAAGAACGGGAAAGAA 1073 Query 1173 CTAGAGGCTACTCTTGTTGCACAGGATGTGAAATACGGGATGTTTCCATTCTTACGTCCA 1232 ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 1074 CTAGAGGCTACTCTTGTTGCACAGGATGTGAAAAACGGAATGTTTCCATTCTTACGTCCG 1133 Query 1233 TCTAGCTTATACCATGCATATTATCGGAAGGTTCTCCAAGAAGCCGAAGAGTTAAAATCA 1292 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1134 GCTAGCTTATACCATTCATATTATCGGAAGGTTCTCCAAGAAGCCGAAGAGTTAAAATCA 1193 Query 1293 GGTGACAAAGGCGTTATTATCAGAAAAGAAGACGTGAAGCAAGAGAAGATGGGCAATGCT 1352 ||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 1194 TGTGACAAAGGCGTCATTACCAGAAAGGAAGACGTGAAGCAAGAGAAGATGGGCAATGCT 1253 Query 1353 GTAAAAGATAGCAAACACGGGTTTGGGAGTGTTTTACCAGATGATTCTGCCAAGAAAGAG 1412 ||||||||| ||||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 1254 GTAAAAGATGGCAAATATGCGTTTGGGAGTGTTTTACCAGATGATTCTGCCAAGAAAGAG 1313 Query 1413 AAACTAAAAATGGTTAGTGACAAACCAAAGGTCGAGTTGCACAATGAACCATTCAAGCCT 1472 ||||||||| | |||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 1314 AAACTAAAAGTTGTTAGTGACAAACCAAAGGTCGAGTTGCACAACGAATCATTCAAGCCT 1373 Query 1473 GTCCAACCGCAGATGAGGGTCAATGTGGATGCGAATACTGCTGCTGCTATTCTTCAAGCG 1532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1374 GTCCAACCGCAGATGAGGGTCAATGTGGATGCGAATACTGCTGCTGCTATTCTTCAAGCG 1433 Query 1533 GCTAGAAGAGGCATAAGGAATCCCCAGTTGGGGATTCTAACAGGCAAACCCATGGATGAG 1592 ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 1434 GCTAGAAGAGGCATAAGGAATCCCCAGTTGGGGATCCTATCAGGCAAACCCATGGATGAG 1493 Query 1593 ACTTCTCAGACCCTTGGAAATGATGTGA-GTTACCCTTCATCTAAGTCCCCTGATTTGGC 1651 |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 1494 ACTTCTCAGAGCCTTGGAAATGATG-GAAGTTACCCTTCATCTAAGTCCCCTGATTTGGC 1552 Query 1652 CAAATCTACAGGTCAATCACTCTCTGGCTCGACTGCTGCTAGTGAAGCTGATTCTTCTGA 1711 ||||||| |||||||||| |||||||||||||||||| |||||||||||||||| ||||| Sbjct 1553 CAAATCTTCAGGTCAATCGCTCTCTGGCTCGACTGCTCCTAGTGAAGCTGATTCATCTGA 1612 Query 1712 AGCAGGCTTGTCTAAAGAGCAGAAGTTGAAGGCAGAAAGATTGAAACGTGCAAAAATGTT 1771 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1613 AGCAGGCTTGTCTAAGGAGCAGAAGTTGAAGGCAGAAAGATTGAAACGTGCAAAAATGTT 1672 Query 1772 TGTGGCCAAGTTAAAACCTGATGCGCAGCCAGTTCAACAAGCTGAACCGTCGCGAAGCAT 1831 ||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| Sbjct 1673 TGTGGCCAAGTTAAAACCTGATGCGCACCCTGTGCAACAAGCTGAACCGTCGCGAAGCAT 1732 Query 1832 ATCAGTCGAACCGTTGGACTCTGGGATTTCTGGATTAGGTGCTAAGGCTGCCAAAGAAAG 1891 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1733 ATCAGTTGAACCGTTGGACTCTGGGATTTCTGGATTAGGTGCTAATGCTGCCAAAGAAAG 1792 Query 1892 AGACAGTAGCTCGATTCCATATGTAGCTGAGTCAAAACTAGCGGATGATGGTAACAGTGA 1951 |||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||| Sbjct 1793 AGACAGTAGCTCGATTCCATCTGTAGCTGAGACAAAACTAGCAGATGATGGTAACAGTGA 1852 Query 1952 AAGACGATCAAAGAGGAATTACCGTTCGAGATCACAGAGAGATGAAGATGGTAAGATGGA 2011 ||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 1853 AAGACGACCAAAGAGGAATTACCGTTCGAGATCACATAGAGATGAAGATGTTAAGATGGA 1912 Query 2012 ACAAG--GA-G-A-A-GAGGAAGAGAGCAGCATGGACGAAGTTACAGAAGAAACCAAGAC 2065 ||||| || | | | |||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 1913 ACAAGAAGAAGGAGAAGAGGAAGAGAGCAGCATGGATGAAGTGACAGAAGAAACCAAGAC 1972 Query 2066 TGATAAGAAGCATTCATGTAGTAGAAAACGGCATA--A---A----CATAAGACACGATA 2116 ||||||||||||||||| ||||||||||||||||| | | |||||||||||||| Sbjct 1973 TGATAAGAAGCATTCATCTAGTAGAAAACGGCATATTAGGCATAAACATAAGACACGATA 2032 Query 2117 CTCTTCCAAGGACAGACATTCTCGGGACAAGCACAAGCATGAGAGCTCCTCAGATGATGA 2176 ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 2033 CTCTTCCAAGGACAGACATTCTCGGGACAAGCACAAGCATGCGAGCTCCTCGGATGATGA 2092 Query 2177 GTATCACAGTCGTTCGCGTCATAGACACAGACACAGCAAATCTTCAGATAGGCATGAGCT 2236 ||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2093 GTATCACAGCCGTTCACGTCATAGACACAGATACAGCAAATCTTCAGATAGGCATGAGCT 2152 Query 2237 TTATGATTCTTCTGATAATGAGGGTGAGCACCGACACAGATCCAGTAAGCATAGCAAAGA 2296 ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 2153 ATATGATTCTTCTGATAACGAGGGTGAGCACCGACACAGATCTAGTAAGCATAGCAAAGA 2212 Query 2297 CGTTGATTATTCTAAGGACAAGCGTAGCCATCATCACAGATCCAGGAAGCATGA-AAAGC 2355 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 2213 CGTTGATTATTCTAAGGACAAGCGTAGCCATCATCACAGATCCAGGAAGCATGATAAA-C 2271 Query 2356 ACCGTGATTCATCTGATGATGAACATCATCAC--CA-CCGACACAGATCCAGTAGACGCA 2412 | ||||||||||||||||||||||||||||| || |||||||||||||||||| |||| Sbjct 2272 ATCGTGATTCATCTGATGATGAACATCATCATTACAACCGACACAGATCCAGTAGGCGCA 2331 Query 2413 AGCACGAGGACTCTTCAGACGTTGAGCATGGTCATCGTCACAAGTCTAGTAAACGTATAA 2472 | ||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||| Sbjct 2332 AACACGAGGACTCTTCAGAAGATGAGCATGGTCATCGACACAAGTCTAGTAAACGTATAA 2391 Query 2473 AGAAAGATGAGAAAACAGTGGAAGAGGAGACTGTTTCAAAGTCAGATCAGTCTGATCTTA 2532 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2392 AGAAAGATGAGAAAACAGTGGAAGAGGAGGCTGTTTCAAAGTCAGATCAGTCTGATCTTA 2451 Query 2533 AAGCATCTCCTGGAGATAACATCCCGTATCTGCAAAATGAACCATCTCAAGTTTCGGATG 2592 |||| ||||||| ||||||||||| ||| | || ||| |||||| ||||||||||||||| Sbjct 2452 AAGCTTCTCCTGAAGATAACATCCAGTACCCGCGAAACGAACCAACTCAAGTTTCGGATG 2511 Query 2593 AGCTAAGAGCCAAAATCCGTGCCATGTTAGCTGATACCTTG 2633 ||||||||||||||||||||||||||||||||||||||||| Sbjct 2512 AGCTAAGAGCCAAAATCCGTGCCATGTTAGCTGATACCTTG 2552 > Ahg359633 jgi|Araly1|359633|fgenesh1_pg.C_scaffold_527000001 Length=1335 Score = 1471 bits (796), Expect = 0.0 Identities = 928/989 (94%), Gaps = 20/989 (2%) Strand=Plus/Plus Query 1663 GTCAATCACTCTCTGGCTCGACTGCTGCTAGTGAAGCTGATTCTTCTGAAGCAGGCTTGT 1722 ||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct 2 GTCAATCGCTCTCTGGCTCGACTGCTCCTAGTGAAGCTGATTCATCTGAAGCAGGCTTGT 61 Query 1723 CTAAAGAGCAGAAGTTGAAGGCAGAAAGATTGAAACGTGCAAAAATGTTTGTGGCCAAGT 1782 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 62 CTAAGGAGCAGAAGTTGAAGGCAGAAAGATTGAAACGTGCAAAAATGTTTGTGGCCAAGT 121 Query 1783 TAAAACCTGATGCGCAGCCAGTTCAACAAGCTGAACCGTCGCGAAGCATATCAGTCGAAC 1842 |||||||||||||||| || || |||||||||||||||||||||||||||||||| |||| Sbjct 122 TAAAACCTGATGCGCACCCTGTGCAACAAGCTGAACCGTCGCGAAGCATATCAGTTGAAC 181 Query 1843 CGTTGGACTCTGGGATTTCTGGATTAGGTGCTAAGGCTGCCAAAGAAAGAGACAGTAGCT 1902 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 182 CGTTGGACTCTGGGATTTCTGGATTAGGTGCTAATGCTGCCAAAGAAAGAGACAGTAGCT 241 Query 1903 CGATTCCATATGTAGCTGAGTCAAAACTAGCGGATGATGGTAACAGTGAAAGACGATCAA 1962 ||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| ||| Sbjct 242 CGATTCCATCTGTAGCTGAGACAAAACTAGCAGATGATGGTAACAGTGAAAGACGACCAA 301 Query 1963 AGAGGAATTACCGTTCGAGATCACAGAGAGATGAAGATGGTAAGATGGAAC------AAG 2016 ||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| Sbjct 302 AGAGGAATTACCGTTCGAGATCACATAGAGATGAAGATGTTAAGATGGAACAAGAAGAAG 361 Query 2017 GAGAAGAGGAAGAGAGCAGCATGGACGAAGTTACAGAAGAAACCAAGACTGATAAGAAGC 2076 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 362 GAGAAGAGGAAGAGAGCAGCATGGATGAAGTGACAGAAGAAACCAAGACTGATAAGAAGC 421 Query 2077 ATTCATGTAGTAGAAAA---C------GGCATAAACATAAGACACGATACTCTTCCAAGG 2127 |||||| |||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 422 ATTCATCTAGTAGAAAACGGCATATTAGGCATAAACATAAGACACGATACTCTTCCAAGG 481 Query 2128 ACAGACATTCTCGGGACAAGCACAAGCATGAGAGCTCCTCAGATGATGAGTATCACAGTC 2187 |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| | Sbjct 482 ACAGACATTCTCGGGACAAGCACAAGCATGCGAGCTCCTCGGATGATGAGTATCACAGCC 541 Query 2188 GTTCGCGTCATAGACACAGACACAGCAAATCTTCAGATAGGCATGAGCTTTATGATTCTT 2247 |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 542 GTTCGCGTCATAGACACAGATACAGCAAATCTTCAGATAGGCATGAGCTATATGATTCTT 601 Query 2248 CTGATAATGAGGGTGAGCACCGACACAGATCCAGTAAGCATAGCAAAGACGTTGATTATT 2307 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 602 CTGATAACGAGGGTGAGCACCGACACAGATCTAGTAAGCATAGCAAAGACGTTGATTATT 661 Query 2308 CTAAGGACAAGCGTAGCCATCATCACAGATCCAGGAAGCATGA-AAAGCACCGTGATTCA 2366 ||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||| Sbjct 662 CTAAGGACAAGCGTAGCCATCATCACAGATCCAGGAAGCATGATAAA-CATCGTGATTCA 720 Query 2367 TCTGATGATGAACATCATCAC--CA-CCGACACAGATCCAGTAGACGCAAGCACGAGGAC 2423 |||||||||||||||||||| || |||||||||||||||||| ||||| ||||||||| Sbjct 721 TCTGATGATGAACATCATCATTACAACCGACACAGATCCAGTAGGCGCAAACACGAGGAC 780 Query 2424 TCTTCAGACGTTGAGCATGGTCATCGTCACAAGTCTAGTAAACGTATAAAGAAAGATGAG 2483 |||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 781 TCTTCAGAAGATGAGCATGGTCATCGACACAAGTCTAGTAAACGTATAAAGAAAGATGAG 840 Query 2484 AAAACAGTGGAAGAGGAGACTGTTTCAAAGTCAGATCAGTCTGATCTTAAAGCATCTCCT 2543 |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 841 AAAACAGTGGAAGAGGAGGCTGTTTCAAAGTCAGATCAGTCTGATCTTAAAGCTTCTCCT 900 Query 2544 GGAGATAACATCCCGTATCTGCAAAATGAACCATCTCAAGTTTCGGATGAGCTAAGAGCC 2603 | ||||||||||| ||| | || ||| |||||| |||||||||||||||||||||||||| Sbjct 901 GAAGATAACATCCAGTACCCGCGAAACGAACCAACTCAAGTTTCGGATGAGCTAAGAGCC 960 Query 2604 AAAATCCGTGCCATGTTAGCTGATACCTT 2632 ||||||||||||||||||||||||||||| Sbjct 961 AAAATCCGTGCCATGTTAGCTGATACCTT 989 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 109204732415 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5