BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55180.2
Length=1603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495603 jgi|Araly1|495603|fgenesh2_kg.8__1419__AT5G55180.1 2124 0.0
> Ahg495603 jgi|Araly1|495603|fgenesh2_kg.8__1419__AT5G55180.1
Length=1445
Score = 2124 bits (1150), Expect = 0.0
Identities = 1327/1412 (94%), Gaps = 13/1412 (1%)
Strand=Plus/Plus
Query 53 ATGGCGGTCTTCGTTTTATCTC---TACTCATACTCTCTTCCTTCTCAGCCATTCCATTC 109
||||| || ||||||||||||| ||||| |||||||||| |||||||||||||| |||
Sbjct 1 ATGGCTGTTTTCGTTTTATCTCTAGTACTCCTACTCTCTTCATTCTCAGCCATTCCCTTC 60
Query 110 ACTTATGCAGATTCTGGAATGATCGGAGTTAACTACGGCCGTATAGCAGACAATCTTCCG 169
||||| ||||||||||||||||||||||| || ||||| || || |||||||||||||||
Sbjct 61 ACTTACGCAGATTCTGGAATGATCGGAGTGAATTACGGTCGGATTGCAGACAATCTTCCG 120
Query 170 GCACCGGAGAAAGTAGTTGAGCTACTGAAAACACAAGGAATCAACCGCATCAAGCTTTAC 229
||||||||||||||||| ||||| || ||||||||||||||||||||| |||||||||||
Sbjct 121 GCACCGGAGAAAGTAGTCGAGCTGCTTAAAACACAAGGAATCAACCGCGTCAAGCTTTAC 180
Query 230 GACACCGAGACAACTGTACTAACCGCACTCGCGAACTCCGGAATCAAAGTCGTTGTCTCT 289
|||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 GACACCGAGAAAACCGTACTAACCGCACTCGCAAACTCCGGAATCAAAGTCGTTGTCTCT 240
Query 290 CTCCCCAACGAAAACCTCGCTTCCGCCGCCGCAGATCAGAGCTACACCGACACTTGGGTT 349
|||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 241 CTCCCCAACGAAAATCTCGCCTCCGCCGCCGCAGATCAGAGTTACACCGACACCTGGGTT 300
Query 350 CAGGACAACATAAAGAAGTACATTCCAGCGACGGATATCGAAGCAATCGCCGTTGGGAAC 409
||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || |||
Sbjct 301 CAGGAAAACATAAAGAAATACATTCCGGCGACGGATATCGAAGCAATCGCCGTCGGTAAC 360
Query 410 GAAGTGTTCGTCGATCCGAGGAACACGACGACGTATCTCGTTCCAGCTATGAAGAATGTT 469
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 GAAGTCTTCGTCGATCCGAGGAACACGACGACGTATCTCGTTCCAGCTATGAAGAACGTT 420
Query 470 CAAAGCTCTCTCGTCAAGTTCAATCTCGACAAATCCATTAAGATCTCGTCGCCGATTGCT 529
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 CAAAGCTCTCTCGTTAAGTTCAATCTCGACAAATCCATTAAGATTTCGTCGCCGATTGCT 480
Query 530 TTAAGCGCGTTGGCGAGTTCGTATCCACCGTCGGCTGGTTCGTTTAAACCGGAGTTAATC 589
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 TTAAGCGCGTTAGCGAGTTCGTATCCACCGTCGGCTGGTTCTTTTAAACCGGAGTTAATC 540
Query 590 GAACCGGTTATTAAACCGATGCTTGATCTCCTCCGCAAAACGTCGTCGCATCTTATGGTG 649
|||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 541 GAACCGGTTATTAAACCGATGCTTGATCTCATTCGCAAAACGTCGTCGCATCTCATGGTG 600
Query 650 AATGCTTATCCTTTCTTTGCTTACGCAGCTAACGCCGATAAGATCTCGTTGGATTACGCG 709
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AATGCTTATCCGTTCTTCGCTTACGCAGCTAACGCCGATAAGATCTCGTTGGATTACGC- 659
Query 710 T-TGTTTAAGGAGAACGCCGGGAATGTTGATTCCGGTAACGGTTTGAAGTATAACAGTCT 768
| ||||||| || ||| |||| |||||||||||||||||||| |||||||||||||||||
Sbjct 660 TCTGTTTAAAGATAACACCGGAAATGTTGATTCCGGTAACGGATTGAAGTATAACAGTCT 719
Query 769 CTTAGACGCTCAGATCGACGCCGTTTTCGCCGCAATGTCCGCCGTTGGATTTAACGACGT 828
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 CTTAGACGCTCAGATCGACGCCGTTTTCGCCGCTATGTCCGCCGTTGGATTTAACGACGT 779
Query 829 TAAGCTTGTGGTGACAGAGACAGGCTGGCCTTCTGCCGGAGACGAGAACGAGATTGGTGC 888
|||||| |||||||| ||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 780 TAAGCTCGTGGTGACGGAGACTGGCTGGCCTTCTGCCGGAGATGAGAACGAGATCGGTGC 839
Query 889 TGGTTCGGCTAACGCGGCGGCGTATAACGGCGGGTTAGTTAAAAGAGTGTTGACGGGAAA 948
||||||||||||||||||| | ||||||||||| ||||| || |||||||| ||||||||
Sbjct 840 TGGTTCGGCTAACGCGGCGTCTTATAACGGCGGATTAGTGAAGAGAGTGTTAACGGGAAA 899
Query 949 CGGAACGCCGTTAAAACCGAAGGAGCCACTAAACGTTTATCTGTTCGCTCTGTTTAACGA 1008
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 900 CGGAACGCCGTTAAAACCGAAGGAGCCACTTAACGTTTATTTGTTCGCTCTGTTTAACGA 959
Query 1009 GAATCAGAAAACGGGTCCGACTTCTGAGAGAAACTACGGGTTGTTTTACCCAAACGAGAA 1068
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AAATCAAAAAACAGGTCCGACTTCTGAGAGAAACTACGGGTTGTTTTACCCAAACGAGAA 1019
Query 1069 CAAAGTGTATGACGTTTCGCTCAAC-GGTAAGTCAACGCCGGTCAACGATAACAAAGAGA 1127
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1020 CAAAGTGTATGACGTTTCGCT-TTCTGGTAAGTCAACGCCGGTCAACGATAACAAAGAGA 1078
Query 1128 AGGTTGTTCCGGTGAAACCGTCGCTCGTGGGACAGACGTGGTGTGTGGCGAATGGTAAAA 1187
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1079 AGGTTGTTCCGGTGAAGCCGTCGCACGTGGGACAGACGTGGTGTGTGGCGAATGGGAAAA 1138
Query 1188 CGACGAAGGAGAAGCTTCAGGAAGGTCTCGACTACGCTTGTGGCGAAGGAGGTGCTGATT 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CGACGAAGGAGAAGCTTCAGGAAGGTCTCGACTACGCTTGTGGCGAAGGAGGTGCTGATT 1198
Query 1248 GCCGTCCGATTCAACCGGGTGCCACGTGTTATAATCCTGAATCGTTAGAAGCTCACGCTT 1307
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1199 GCCGTCCGATTCAGCCGGGTGCCACGTGTTATAATCCTGAATCGTTAGAGGCTCACGCTT 1258
Query 1308 CCTACGCGTTCAACAGTTACTATCAGAAGAACGCACGTGGAGTTGGCACGTGTAATTTTG 1367
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1259 CTTACGCGTTCAACAGTTACTATCAAAAGAACGCACGTGGTGTTGGCACGTGTAATTTTG 1318
Query 1368 GTGGTGCAGCGTACGTGGTCTCGCAACCTCCTAGTAAAGTATGGGAAATGCGAGTTTCCA 1427
||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||
Sbjct 1319 GTGGTGCAGCGTACGTGGTCTCGCAACCTCCTA--A--GTATGGAAAATGCGAGTTTCCA 1374
Query 1428 ACAGGGCATTGAAATGGATATAGA-GAAGAAG 1458
|||| ||||||||||||||| ||| |||||||
Sbjct 1375 ACAGAGCATTGAAATGGATA-AGAAGAAGAAG 1405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60068316365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5