BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55220.1
Length=1869
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495607 jgi|Araly1|495607|fgenesh2_kg.8__1423__AT5G55220.1 2608 0.0
> Ahg495607 jgi|Araly1|495607|fgenesh2_kg.8__1423__AT5G55220.1
Length=1796
Score = 2608 bits (1412), Expect = 0.0
Identities = 1640/1747 (94%), Gaps = 27/1747 (2%)
Strand=Plus/Plus
Query 1 AAGAAGAAGTGGCGCTTCATTCATTAGCTCTGTTCAGTATAAGCAAGAAGAGAGAGCGAA 60
||||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 1 AAGAAGAAGTGGCGCTTCATTCATTAG--C---TC----TAAGCAAGAAGAGAGAGCGAA 51
Query 61 AATGGAGCTCTGTGTTATCAGCACGACTACGACGGTGAAGGCAATTAATCCGTTTCTTCC 120
||||||||||||||||||||||||||| ||||||| |||||| |||||| ||||||||||
Sbjct 52 AATGGAGCTCTGTGTTATCAGCACGACGACGACGGCGAAGGCGATTAATACGTTTCTTCC 111
Query 121 GTCTATTACACGTCGTGTTAGTTCCCGTCTCTTCCAATCAGATAGTGTGCTACAGTTTGG 180
||| |||||||| |||||||| ||||||||| ||||||||||||||||| ||||||||||
Sbjct 112 GTCCATTACACGCCGTGTTAGCTCCCGTCTCATCCAATCAGATAGTGTGTTACAGTTTGG 171
Query 181 TGGGAGGTTGAAGAAACCAATTAGCAGGCC-TTTGGACATGTCTTGTGTCTCTAGAAAAA 239
| ||||| |||||||||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct 172 TAGGAGGCTGAAGAAACCAATTAGCA-GCCAATTGGAGATGTCTTGTGTCTCTAGAAATT 230
Query 240 TTGGATTTTTCGGAGATTTTATGTC----A-C-ATGGTGGTAATTTTAGGCTATTCGCGG 293
||||| || |||||| || ||| || | | |||||| |||||||||| |||||||
Sbjct 231 TTGGACTTCTCGGAGGTTCTATTTCTATTAGCGGCGGTGGTGATTTTAGGCTGTTCGCGG 290
Query 294 CGGCTTCTCCAGCGGTTGAAACTAGTGTAAAGGAAGACAAACTTCCAGCTGATCTTAAGG 353
|||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 291 CGGCTTCTCCGGCGGTTGAAACCAGTGTAAAGGAAGACAAGCTTCCAGCTGATCTTAAGG 350
Query 354 TCACGGAGACTGTACAGGCGAATTCAAGTGTGAAATTGAGTGTGGAAGTTCCAGAAATTG 413
|||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 351 TCACCGAGACTCTACAGGCGAATTCAAGTGTGAAATTGAGTGTGGAAGTTCCAGCCATTG 410
Query 414 TCTGTGAAGATTGTTACCAACGAGTCCTTACCGAATTCATGAAACTCTCAAAGGTGCCTG 473
| ||||||||||||||||||||||| || || || |||||||| ||||||||||||||||
Sbjct 411 TTTGTGAAGATTGTTACCAACGAGTTCTAACAGAGTTCATGAAGCTCTCAAAGGTGCCTG 470
Query 474 GATTCCGTCCTAAAACAAGAGTTCCAGAGAATATTATTGTTGGTTTCGTTGGGAGGCAAT 533
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 471 GATTCCGTCCTAAAACGAGAGTGCCAGAGAATATTATTGTTGGTTTCGTTGGGAGGCAAT 530
Query 534 ATGTTCTGAGAGCAACTGTTGAATCTATCTTAAAGAGAACACTTCCTCACGCCATGGAAT 593
| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 531 ACGTTTTGAGAGCAACTGTTGAATCTATCTTGAAGAGAACACTTCCTCACGCCATGGAAT 590
Query 594 CAGTGACTGGAAGGGCTTTAAAAGACTCGATACAGATTGTAAGCAGTTTTCCAGATATGG 653
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 591 CAGTGACTGGAAGGGCTTTAAAAGACTCAATACAGATTGTAAGCAGCTTTCCAGAGATGG 650
Query 654 AGAAGGCTTATTCTAAGCTCAAGACTCTTAGTTATGAGGTGGTTGTTGATGTTGTACCTG 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 651 AGAAGGCTTATTCTAAGCTCAAGACTCTTAGTTATGAGGTGGTTGTTGATGTTGTGCCTG 710
Query 714 AACTAAAATGGAATCCTGAGGATGGGTATAAAAATATGAAGGTCGTTGTAGAACTAGGCG 773
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 711 AACTAAGATGGAATCCTGAGGATGGGTACAAAAATATGAAGGTCGTTGTAGAACTAGGCG 770
Query 774 ATGAGATAGATGCaaaaaaaGCTTGTGAAAGACAACTAAGACAGAAATACAAGTCTCTTG 833
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 771 ACGAGATAGATGCGAAAAAAGCTTGTGAAAGACAACTAAGACAGAAATACAAGTCCCTTG 830
Query 834 GTGCGTTGAAGATTGTAACCGAGCGAGGGCTACAGGTGGGAGATCTAGCAGTTGTTGATA 893
||||| ||||||||||||| || ||||||||||||||||||||||| ||||| |||||||
Sbjct 831 GTGCGCTGAAGATTGTAACTGACCGAGGGCTACAGGTGGGAGATCTTGCAGTCGTTGATA 890
Query 894 TTTCTGCTACAACTATAGATGAGGACGGGTCAACGGGTCAAGCGATTCCAGATGCTGAAA 953
||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 891 TTTCTGCTACAACTATAGATGAGGATGGATCAACGGGTCAAGCGATTCCAGATGCGGAAA 950
Query 954 GCAAAGGTTTTCACTTTGACACTGAAGAAGGGAATAGATTACTTCCTGGATTCCTTGATG 1013
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 GCAAAGGTTTTCACTTTGACACTGAAGAAGGGAATAGATTACTTCCTGGATTCCTTGATT 1010
Query 1014 CAATCATAGGAATTCGAGCAGGCGAATCAAAGTCATTCACGCTTGTGTTTCCTGAATCAT 1073
|||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1011 CAATCATAGGAATTAGAGCTGGCGAATCGAAGTCATTCACGCTTGTGTTTCCTGAATCAT 1070
Query 1074 GGAAACAAGAAAGTCTACGTGGCCAACGTGCTCAATTCACTGTTGACTGCAAGGAACTTT 1133
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GGAAACAAGAAAGTCTTCGTGGCCAACGTGCTCAATTCACTGTTGACTGCAAGGAACTTT 1130
Query 1134 TCTACAGAGATTTACCAACATTAGATGACTCACTCGCTGATAAATTGCTTCCTGGATGCA 1193
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1131 TCTACAGAGATTTACCAACATTAGATGACTCACTTGCTGATAAATTACTTCCTGGATGCA 1190
Query 1194 CCACTTTAAAGGAGGTTGAAGAAACTCTGGCTAAAAGATGTCAAGAGATGGAGCAGGAAG 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 CCACTTTAAAGGAGGTTGAAGAAACTCTGGCTAAAAGATGTCAAGAGATGGAGCAGGAAG 1250
Query 1254 CCAAGGAGCAAGCGACAGACAACGCCATCCTTGAGCAGATTCGAAAGATGGTTGAAGTAG 1313
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1251 CCAAGGACCAAGCGACAGACAACGCCATCCTTGACCAGATTCGAAAGATGGTTGAAGTAG 1310
Query 1314 AGATTCCTCAATCTTTATTTGAGGAACAAGGAAGACAGTTTTATGGAGCTAGGCTTCTAG 1373
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1311 AGATTCCTCAATCTTTATTTGAGGAACAAGGAAGACAGTTTTATGGAGCAAGGCTTCTAG 1370
Query 1374 AGATTCAGG---G---AAACATGAAGCTTAACGAAGACCAGTTGGCTTCTCTTTCAAGTC 1427
||||||||| | |||||||||||| | ||||||||| |||||||||||||||||||
Sbjct 1371 AGATTCAGGCAAGTGGAAACATGAAGCTCACCGAAGACCAATTGGCTTCTCTTTCAAGTC 1430
Query 1428 AAAAAGCAGTAAATGAGTTTCTAGAAACTCAAAGAGAGAGCATCACCAACATAATCAAGC 1487
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1431 AAAAAGCAGTAAATGAGTTTCTAGAAACTCAAAGAGAAAGCATTACCAACATAATCAAGC 1490
Query 1488 AGAATATAGCTGTTGGAGATATCTTCAAGCGCGAAAACTTAGAGTTCTCAACAGATGAAC 1547
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 AGAATTTAGCTGTCGGAGATATCTTCAAGCGCGAAAACTTAGAGTTCTCAACAGATGAAC 1550
Query 1548 TAGTTAAAGAGGTCGAAAACTCGATCTCAGAATTCAAGAAACATAAACAAGAGT-TCGAC 1606
| |||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1551 TCGTTAAAGAGGTCGAGAACTCGATCTCAGAATTCAAGAAACATAAACAAGAGTAT-GAC 1609
Query 1607 GAGGAGCGTGTGAAAGATCAGGTACAAGAGATTTTAGAAGGAGCAAAAGTGCTTGAATGG 1666
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 GAAGAGCGTGTGAAAGATCAGGTACAAGAGATTTTAGAAGGAGCAAAAGTGCTTGAATGG 1669
Query 1667 TTAAAAGACCGAGCCGAGATTCAATACATCACTCGTTGATTAGCATATAGGTAATGTATG 1726
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1670 TTGAAAGACCGAGCCGAGATTCAATACATCACTCGTTGATTAGCATA--GGTAATGTATG 1727
Query 1727 TATGATT 1733
|||||||
Sbjct 1728 TATGATT 1734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70200321535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5