BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55260.1
Length=1370
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495612 jgi|Araly1|495612|fgenesh2_kg.8__1428__AT5G55260.1 1716 0.0
> Ahg495612 jgi|Araly1|495612|fgenesh2_kg.8__1428__AT5G55260.1
Length=1171
Score = 1716 bits (929), Expect = 0.0
Identities = 1053/1110 (95%), Gaps = 19/1110 (2%)
Strand=Plus/Plus
Query 116 CTTCGTAAATTTTGCGTCTGATTATC-AAATTA-GGttttttttGTTGTTTCCATTAGTT 173
|||||| ||||||||||||||||||| |||||| ||||||| || || ||||||||||||
Sbjct 69 CTTCGTGAATTTTGCGTCTGATTATCGAAATTAGGGTTTTTATT-TTCTTTCCATTAGTT 127
Query 174 GTC--TCATTG-TCTGT-GAAG-AGAAAGGAACAGAGGAAAATGTCAGACCTAGACAAGC 228
||| | | | || |||| ||||| || | | ||||||||||||| ||||| |||
Sbjct 128 GTCTGTGA-AGAAAGGTGGAAGAAGAAA--AA-A-AAGAAAATGTCAGACATAGACCAGC 182
Query 229 AAATAGAGCAGCTTAAACGCTGCGAGGCTTTGAAGGAATCAGAAGTGAAGGCTCTTTGTC 288
||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 183 AAATAGAGCAGCTAAAACGCTGCGAGCCTTTGAAGGAATCAGAAGTGAAAGCTCTTTGTC 242
Query 289 TTAAAGCTATGGAGATTCTAGTTGAAGAGAGCAATGTTCAAAGAGTCGATGCTCCTGTCA 348
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TCAAAGCCATGGAAATTCTAGTTGAAGAGAGCAATGTTCAAAGAGTCGATGCTCCTGTCA 302
Query 349 CTATATGTGGCGACATTCATGGACAGTTCTATGACATGAAAGAGCTTTTCAAAGTTGGGG 408
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 303 CTATATGTGGCGACATTCATGGGCAGTTCTATGACATGAAAGAGCTTTTCAAAGTCGGCG 362
Query 409 GTGATTGCCCTAAGACCAA-TTATTTGTTTCTTGGAGATTTTGTTGACCGAGGTTTTTAT 467
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 363 GTGATTGCCCTAAGA-CAAGTTATTTGTTTCTTGGAGATTTTGTTGACCGAGGTTTTTAT 421
Query 468 TCGGTTGAGACATTTCTACTTCTTCTAGCTCTCAAGGTTAGATATCCAGACCGTATAACT 527
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TCAGTTGAGACATTTCTACTTCTTCTAGCTCTCAAGGTTAGATATCCAGACCGTATAACT 481
Query 528 CTCATTAGAGGGAACCACGAGAGCCGGCAGATTACGCAGGTATATGGATTTTATGATGAG 587
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 482 CTCATTAGAGGGAACCACGAGAGCCGGCAGATTACGCAGGTATATGGTTTTTATGATGAG 541
Query 588 TGTCTGCGTAAATATGGCTCTGTAAATGTTTGGAGATACTGCACAGATATCTTTGACTAC 647
|| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 542 TGCCTACGTAAATATGGCTCTGTAAATGTTTGGAGATATTGCACAGATATCTTTGACTAC 601
Query 648 TTGAGTCTTTCAGCTCTTGTCGAGAACAAGATATTTTGTGTTCATGGAGGTCTCTCTCCA 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TTGAGTCTTTCAGCTCTTGTCGAGAACAAGATATTTTGTGTTCATGGAGGTCTCTCTCCA 661
Query 708 GCTATTATGACTCTAGACCAGATCAGGGCTATTGATCGAAAGCAAGAAGTACCACATGAT 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 GCTATTATGACTCTAGACCAGATCAGGGCTATTGATCGAAAGCAAGAAGTACCACATGAT 721
Query 768 GGTGCTATGTGTGATCTTTTATGGTCTGATCCAGAAGATATTGTCGATGGTTGGGGATTG 827
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 722 GGTGCCATGTGTGATCTTTTATGGTCTGATCCAGAAGATATTGTCGATGGCTGGGGATTG 781
Query 828 AGTCCCCGTGGTGCCGGATTCCTTTTCGGCGGCAGTGTTGTTACGTCTTTTAACCACTCA 887
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 782 AGTCCACGTGGTGCCGGATTCCTTTTCGGTGGCAGTGTTGTTACGTCTTTTAACCACTCA 841
Query 888 AACAACATTGATTACATATGTCGAGCTCATCAGCTAGTGATGGAAGGTTACAAATGGATG 947
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 842 AACAACATTGATTACATATGTCGAGCTCATCAGCTAGTTATGGAAGGTTACAAATGGATG 901
Query 948 TTCAATAGCCAGATAGTCACTGTTTGGTCTGCCCCAAATTACTGTTATAGATGCGGTAAT 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TTCAATAGCCAGATAGTCACTGTTTGGTCTGCCCCAAATTACTGTTATAGATGCGGTAAT 961
Query 1008 GTAGCTGCAATTCTAGAGCTCGATGAGAATCTAAACAAAGAGTTTCGTGTCTTCGATGCA 1067
|| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 962 GTTGCTGCAATTCTAGAGCTCGATGAGAATCTAAATAAGGAGTTTCGTGTCTTCGATGCA 1021
Query 1068 GCCCCACAAGAATCGAGAGGAGCTCTAGCCAAGAAACCTGCACCTGATTATTTCCTGTGA 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 GCCCCACAAGAATCGAGAGGAGCTCTAGCCAAGAAACCTGCACCTGATTATTTCCTGTGA 1081
Query 1128 GACGCAA----GTGAATACAGAAACTGGTTCCTTCTTCTCATTGCAGAGCAAGAAAGCTA 1183
||||||| ||||| ||||||| |||||| ||||||||||||||||||| |||| |||
Sbjct 1082 GACGCAAAACAGTGAAAACAGAAATTGGTTCTTTCTTCTCATTGCAGAGCACGAAAACTA 1141
Query 1184 CCCAAAATCATCGGTGTATAGGTTGTAAAA 1213
||||||||||||||||||||||||||||||
Sbjct 1142 CCCAAAATCATCGGTGTATAGGTTGTAAAA 1171
Score = 119 bits (64), Expect = 6e-26
Identities = 72/75 (96%), Gaps = 3/75 (4%)
Strand=Plus/Plus
Query 13 GGGGAGAAAACACCCCTTCGGAGAGGAGCAAAGCCTCTCCTGGGGAAGAAGAAGAAGAAC 72
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 GGGGAGAAAACACCCCTTCGGAGAGGAGCAAAGCCTCTCCTGGGGAAGAAGAAGAA---C 57
Query 73 ACGACTTTTTGCTTC 87
|||||||||||||||
Sbjct 58 ACGACTTTTTGCTTC 72
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51275323365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5