BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G55410.2

Length=701
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg495625 jgi|Araly1|495625|fgenesh2_kg.8__1441__AT5G55410.1         599    9e-171


> Ahg495625 jgi|Araly1|495625|fgenesh2_kg.8__1441__AT5G55410.1
Length=654

 Score =  599 bits (324),  Expect = 9e-171
 Identities = 399/435 (92%), Gaps = 5/435 (1%)
 Strand=Plus/Plus

Query  15   TTTACGTTACGCTCTTAAATTACTACTAAC-TTTCGGTTAGCATTTTAAC-TTGTTTATA  72
            |||||||||||||||||||||||||||| | |||  |||||||||||| | |||||||||
Sbjct  1    TTTACGTTACGCTCTTAAATTACTACTACCTTTTTAGTTAGCATTTTAGCTTTGTTTATA  60

Query  73   AACAAGCTCATGATCATGAGGGGGATTCACAAGTAGAGTCTAGAGAAAAGAGAGAATGGG  132
            ||| ||| ||||||||| | ||||||||||||||||| ||||||||||||||||||||||
Sbjct  61   AACGAGCCCATGATCAT-AAGGGGATTCACAAGTAGAATCTAGAGAAAAGAGAGAATGGG  119

Query  133  TAAGAACAATACCAAATTCCTTATGCAATTTGCAACTTTTGCAATGGTTTTAACCTTTGC  192
            |||||||||||||| |||||| |||||||||||| || ||||||| ||||||||| ||||
Sbjct  120  TAAGAACAATACCAGATTCCTGATGCAATTTGCAGCTCTTGCAATAGTTTTAACCGTTGC  179

Query  193  GATGATGGTCAAAGAAGCTACAAGCATGTCCATTTGTGACATGGACATAAATGATATGCA  252
             || ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct  180  AATAATGGTGAAAGAAGCTACAAGCATGTCCATTTGTAACATGGACACAAATGATATGCA  239

Query  253  GAAATGTCGCCCAGCCATCACTGGAAACAATCCCCCACCTCCCGTCAATGATTGCTGCGT  312
            ||||||||| |||||||||||||||||||||||||| ||||| ||||| || ||||||||
Sbjct  240  GAAATGTCGTCCAGCCATCACTGGAAACAATCCCCCGCCTCCTGTCAACGAGTGCTGCGT  299

Query  313  AGTGGTTCGGA-AAGCTAATTTCGAATGCTTATGCAGATTTAAGTTTTATCTCCCAATTT  371
            |||||||| ||   |||||| ||||||||||||||||||| |||||||||||||| ||||
Sbjct  300  AGTGGTTC-GAGGCGCTAATCTCGAATGCTTATGCAGATTCAAGTTTTATCTCCCGATTT  358

Query  372  TACGAATTGATCCATCTAAAGTCGTGGCTCTTGTAGCTAAATGTGGTGTTACAACAGTCC  431
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  359  TACGAATTGATCCATCTAAAGTCGCGGCTCTTGTAGCTAAATGTGGTGTTACAACAGTCC  418

Query  432  CTCGTTCTTGCCAAG  446
            ||||| |||||||||
Sbjct  419  CTCGTGCTTGCCAAG  433



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25771091892


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5