BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G55410.2 Length=701 Score E Sequences producing significant alignments: (Bits) Value Ahg495625 jgi|Araly1|495625|fgenesh2_kg.8__1441__AT5G55410.1 599 9e-171 > Ahg495625 jgi|Araly1|495625|fgenesh2_kg.8__1441__AT5G55410.1 Length=654 Score = 599 bits (324), Expect = 9e-171 Identities = 399/435 (92%), Gaps = 5/435 (1%) Strand=Plus/Plus Query 15 TTTACGTTACGCTCTTAAATTACTACTAAC-TTTCGGTTAGCATTTTAAC-TTGTTTATA 72 |||||||||||||||||||||||||||| | ||| |||||||||||| | ||||||||| Sbjct 1 TTTACGTTACGCTCTTAAATTACTACTACCTTTTTAGTTAGCATTTTAGCTTTGTTTATA 60 Query 73 AACAAGCTCATGATCATGAGGGGGATTCACAAGTAGAGTCTAGAGAAAAGAGAGAATGGG 132 ||| ||| ||||||||| | ||||||||||||||||| |||||||||||||||||||||| Sbjct 61 AACGAGCCCATGATCAT-AAGGGGATTCACAAGTAGAATCTAGAGAAAAGAGAGAATGGG 119 Query 133 TAAGAACAATACCAAATTCCTTATGCAATTTGCAACTTTTGCAATGGTTTTAACCTTTGC 192 |||||||||||||| |||||| |||||||||||| || ||||||| ||||||||| |||| Sbjct 120 TAAGAACAATACCAGATTCCTGATGCAATTTGCAGCTCTTGCAATAGTTTTAACCGTTGC 179 Query 193 GATGATGGTCAAAGAAGCTACAAGCATGTCCATTTGTGACATGGACATAAATGATATGCA 252 || ||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 180 AATAATGGTGAAAGAAGCTACAAGCATGTCCATTTGTAACATGGACACAAATGATATGCA 239 Query 253 GAAATGTCGCCCAGCCATCACTGGAAACAATCCCCCACCTCCCGTCAATGATTGCTGCGT 312 ||||||||| |||||||||||||||||||||||||| ||||| ||||| || |||||||| Sbjct 240 GAAATGTCGTCCAGCCATCACTGGAAACAATCCCCCGCCTCCTGTCAACGAGTGCTGCGT 299 Query 313 AGTGGTTCGGA-AAGCTAATTTCGAATGCTTATGCAGATTTAAGTTTTATCTCCCAATTT 371 |||||||| || |||||| ||||||||||||||||||| |||||||||||||| |||| Sbjct 300 AGTGGTTC-GAGGCGCTAATCTCGAATGCTTATGCAGATTCAAGTTTTATCTCCCGATTT 358 Query 372 TACGAATTGATCCATCTAAAGTCGTGGCTCTTGTAGCTAAATGTGGTGTTACAACAGTCC 431 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 359 TACGAATTGATCCATCTAAAGTCGCGGCTCTTGTAGCTAAATGTGGTGTTACAACAGTCC 418 Query 432 CTCGTTCTTGCCAAG 446 ||||| ||||||||| Sbjct 419 CTCGTGCTTGCCAAG 433 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25771091892 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5