BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G55420.1 Length=317 Score E Sequences producing significant alignments: (Bits) Value Ahg495626 jgi|Araly1|495626|fgenesh2_kg.8__1442__AT5G55420.1 363 6e-100 > Ahg495626 jgi|Araly1|495626|fgenesh2_kg.8__1442__AT5G55420.1 Length=256 Score = 363 bits (196), Expect = 6e-100 Identities = 239/259 (92%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 16 ATCCTGATGCAATTTGCAGCTCTTGCGATGGTTTTAACGGCTGCAATAATGGTGAAAGAA 75 ||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| Sbjct 1 ATCCTGATGCAATTTTCAGCTCTTGCGGTGGTTTTAACCGCTGCAATAATGGTGAAAGAG 60 Query 76 GCTAGAAGCATTCCCATTTGCAACATCGAGACAAATGACTTGGTCAAATGTCATCCAGCT 135 |||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 61 GCTACAAGCATTCCCATTTGCAACATCGAGACAAATGACTTGGGAAAATGTGGTCCAGCT 120 Query 136 TTCACTGGAATTGAAACAACCCGCCACCTCCGGGACCTGACTGTTGCGCATTGGTCAGAG 195 ||||| || | | |||||||||||||||||||||||||||||||||| |||||| || Sbjct 121 TTCACAGGCA---A--CAACCCGCCACCTCCGGGACCTGACTGTTGCGCAGTGGTCAAAG 175 Query 196 CCGCTAATCTACAATGCCTTTGCCCGTACAAGCCTTATCTCTCCAGGTTTGGGATTGATC 255 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 176 CCGCTAATCTACAATGCCTTTGCCCGTACAAGCCTTTTCTCTCCAGGTTTGGGATTGATC 235 Query 256 CATCTAAAGTCAGGCCTCT 274 || |||||||||||||||| Sbjct 236 CAACTAAAGTCAGGCCTCT 254 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11179587577 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5