BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G55440.1 Length=1343 Score E Sequences producing significant alignments: (Bits) Value Ahg331872 jgi|Araly1|331872|fgenesh1_pm.C_scaffold_8001215 1640 0.0 Ahg950447 jgi|Araly1|950447|scaffold_802334.1 928 0.0 Ahg917467 jgi|Araly1|917467|Al_scaffold_0008_2218 926 0.0 > Ahg331872 jgi|Araly1|331872|fgenesh1_pm.C_scaffold_8001215 Length=1098 Score = 1640 bits (888), Expect = 0.0 Identities = 1030/1100 (94%), Gaps = 4/1100 (0%) Strand=Plus/Plus Query 26 ATGGCTCTGTTCTTCAGCCGAATCTCAAAGCTTTCTGGACGCAGGAACAATGCTCGTTTC 85 ||||| ||||| |||||||||||||||||||| |||| ||||| |||||||||||||||| Sbjct 1 ATGGCGCTGTTTTTCAGCCGAATCTCAAAGCTCTCTGTACGCAAGAACAATGCTCGTTTC 60 Query 86 TTCTCATCATTGCCTCCGTCCCCATGCTTGGTGCTGACCACTAAGAAGTTGCGAGGGTCT 145 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 61 TTCTCATCATTGCCTCAGTCCCCATGCTTGGTGCTGACCACTAAGAAGTTGCGAGAGTCT 120 Query 146 CCAGAGGAGGGCCTAATCGTGCATCACAAGTTATTCGAACCGGCTACGGaaaaaaaaGTG 205 |||||||||||||||||||||||||| ||||||||||| ||| | || ||||| |||||| Sbjct 121 CCAGAGGAGGGCCTAATCGTGCATCAAAAGTTATTCGACCCGACAACAGAAAAGAAAGTG 180 Query 206 TACGGCAATGAGAAGAAGTATCCCAAAGAGCTTCATGGAGCTCCGCTTCTGGGAGCATCG 265 ||| |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 181 TACAGCAAGGAGAAGAAGTATCCCAAAGAGCTTCGTGGAGCTCCTCTTCTGGGAGCATCG 240 Query 266 AAAGGTTGGGTCGCTTTTTTCAAGGAGAAAGACATTAGTGTGCATCTCACGGATCTGTAC 325 |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 241 AAAGGTTGGGTCGCTTCTTTCAAGGAGAAAGACATTACCGTGCATCTCACGGATCTGTAC 300 Query 326 AAGCCTTGTGTCTCATCTCCAAGAGTCATATCATTACCATCACTCAAGCTC-GACTATAA 384 ||||||||||||||||||||| ||||||||||||||||||||||| | || || ||||| Sbjct 301 AAGCCTTGTGTCTCATCTCCACGAGTCATATCATTACCATCACTC-CGGTCTGAGTATAA 359 Query 385 ACCCGCAACTCATGCCACGGAAGTGTGTCTCTCTTCGTCTGATCCTGTCCAAGACGACTA 444 |||| || || ||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 360 ACCCTCATCTTATGCCACCGAAGTGTGTCTCTCTTCTTCTGATCCTGTCCAAGACGACTA 419 Query 445 TTACGTGGCTGCAAAGTTCAATGACTATCACGTAAGTGTATGTAGGCCTCGTTGGGACTC 504 ||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 420 TTATGTGGCTGCAAAGTTCAATGACTATCACGTAAGCGTATGTAGGCCTCGACGGGACTC 479 Query 505 TGACTGGACTCACAACGAGACCGGTTACAGTCTTTTACCAGCCTCTGAGCTCATGTACTC 564 ||| |||||||||||| |||||||||||| |||||||||||||||||||||||||| ||| Sbjct 480 TGAGTGGACTCACAACAAGACCGGTTACACTCTTTTACCAGCCTCTGAGCTCATGTTCTC 539 Query 565 CAAGAGAGACAAAGCCTTCCACTTTACGAGTTTTAAGGGTCTCTACATGGGTTCTCTGTA 624 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 540 CAAGAGAGACAAAGCCTTCCACTTTACGAGTTTTAAAGGTCTCTACATGGGTTCTCTGTA 599 Query 625 TCTCAGTAAAAAAGACGAGATCAAGTATAAAGAGATACGCCTTAGAAACCTGCCTAAGAT 684 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TCTCAGTAACAACGACGAGATCAAGTATAAAGAGATACGCCTTAGAAACCTGCCTAAGAT 659 Query 685 TCCAGAGGCAGGTTGGGAGATGTTGGATAAATGTTCCATGACCAATCACTTAGTGGATTC 744 |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || Sbjct 660 TCCAGAGGCAGGTTGGGAGATGTTAGATAAATGTTCCATGACCAACCACTTAGTGGAATC 719 Query 745 TCCCTCTGGTGAACTTTTCTTCATCAAGTGGTACACACAGTGTATTCACAAAGAGGACGA 804 ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 720 TCCCTGTGGTGAACTTTTCTTCATCAAGTGGTACACACAGTGTCTTCACAAAGAGGACGA 779 Query 805 AGATGGGGATTTGGAATGTCTCCACAGCAAAACTAAGCGGTTCATGGTCTTTAGGCAAGA 864 ||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||| Sbjct 780 AGATGGGGATTTGGAATTTATCCACAGCAGTACTAAGCGGTTCATGGTCTTTAGGCAAGA 839 Query 865 TGGGATGAGCAAAGACTTTGGTTACACTGAAGATATTGGAGATCTCTGCATCTTCCTTGG 924 ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 840 TGGGACGAGCAAAGACTTTTGTTACACTGAAGATATTGGAGATCTCTGCATCTTCCTTAG 899 Query 925 CAAGAGTGAAGCCTTCTGTGTCACGGCAAGTTTGTACCCAGGGCTCAAACCTAACTCCAT 984 | ||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||| Sbjct 900 CGGGAGTGAAGCCTTCTGTGTCACGGCAAGCCTGTCCCCGGGGCTCAAACCTAACTCCAT 959 Query 985 CTATTACCTTGGCCCTAGATTTGGTTCTTACGATCTAGCTTCTGGTACAAACAGTTCC-T 1043 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || | Sbjct 960 CTATTACCTTGGCCCTAGACTTGGTTCTTACGATCTAGCTTCTGGTACAAACAGT-CCAT 1018 Query 1044 TCACGTTCGATCGCTTTGGTAAACCCTCGCTTGTTGTCCCTTACTGGATCCATTCGACAT 1103 ||| |||||||||||||||||||||||| || || ||||||| ||||||||||||||| | Sbjct 1019 TCAAGTTCGATCGCTTTGGTAAACCCTCACTGGTCGTCCCTTTCTGGATCCATTCGACCT 1078 Query 1104 CTTCTCTGAGCTCTAGCTAG 1123 |||||||||| ||||||||| Sbjct 1079 CTTCTCTGAGTTCTAGCTAG 1098 > Ahg950447 jgi|Araly1|950447|scaffold_802334.1 Length=1126 Score = 928 bits (502), Expect = 0.0 Identities = 884/1066 (83%), Gaps = 35/1066 (3%) Strand=Plus/Plus Query 22 AAATATGGCTCTG-TTCTTCAGCCGAATCTCAAAGCTTTCTGGACGCAGGAACAATGCTC 80 ||| ||||||||| ||| ||||||| ||| | ||| |||||||||||| ||||||||| Sbjct 17 AAAAATGGCTCTGTTTC-TCAGCCGCGTCTTGACGCTCTCTGGACGCAGGGACAATGCTC 75 Query 81 GTTTCTTCTCATCATTGCCTCCGTCCCCATGCTTGGTGCTGACCACTAAGAAGTTGCGAG 140 ||||||||||||||||||| | || ||| | ||| | || | |||||||||| ||| Sbjct 76 GTTTCTTCTCATCATTGCCGCAGTTCCCGTATTTGCTAATGGGCGGTAAGAAGTTGGGAG 135 Query 141 GGTCTCCAGAGGAGGGCCTAATC-GTGCATCACAAGTTATTCGAACCGGCTACGGaaaaa 199 |||||| |||||| |||| | | | |||| |||||| || ||| | || ||| | Sbjct 136 AGTCTCC---GGAGGGTAAAATCAG-GAAGCACAGGTTATTTGATCCGACAACTGAAGAG 191 Query 200 aaaGTGTACGGCAATGAGAAGAAGTA-TCCCAAAG-AGCTTC-ATGGAGC-TCCGCTTC- 254 | |||||| |||| ||||||| | | |||| ||| ||| || |||| || || | || Sbjct 192 ACAGTGTATAGCAAAGAGAAGACG-ATTCCC-AAGAAGC-TCAATGG-GCAACCTC-TCG 246 Query 255 TGGGAGCATCGA-AAGGTTGGGTCGCTTTTTTCAAGGAGAAAGACATTAGTGTGCATCTC 313 |||||||||| | |||||||| | |||| | | || | |||||| ||| |||||| || Sbjct 247 TGGGAGCATC-ACAAGGTTGGATAGCTTCTCTGGAGAACAAAGACCTTACCGTGCATATC 305 Query 314 ACGGATCTGTACAAGCCTTGTG-TCTCATCTCCAAGAGTCATATCATTACCATCACTCAA 372 |||||| |||||||||| || | |||||||| ||| ||| |||||||| || | |||| Sbjct 306 ACGGATGTGTACAAGCCATG-GCTCTCATCTTCAAAAGTAATATCATTGCC-T---TCAA 360 Query 373 GCTCGACTATAAACCCGCAACTCATGCCACGGA-AGTGTGTCTCTCTTCGTCTGATCCTG 431 | | | ||||||| |||| ||||| || || ||||| | ||||||| |||||||||| Sbjct 361 --TTGGGTTTAAACCCTCAACACATGCAAC-GAGAGTGTCTTTCTCTTCTTCTGATCCTG 417 Query 432 TCCAAGACGACTATTACGTGGCTGCAAAGTTCAATGACTATCACG-TAAGTGTATGTAGG 490 |||||||||||| || ||||||||||||||| | || |||| | |||||||||||||| Sbjct 418 TCCAAGACGACTTTTCCGTGGCTGCAAAGTTTGACGAGTATC-GGCTAAGTGTATGTAGG 476 Query 491 CCTCGTTGGGACTCTGACTGGACTCACAACGAGACCGGTTACAGTCTTTTACCAGCCTCT 550 ||| |||||||||| | |||||||||| |||||| | ||| |||||||||||||||| Sbjct 477 CCTTATTGGGACTCTAAGTGGACTCACATCGAGACAGCTTATTCTCTTTTACCAGCCTCT 536 Query 551 GAGCTCATGTACTCCAAGAGAGACAAAGCCTTCCACTTTACGAGTTTTAAGGGTCTCTAC 610 || |||||||| || ||||||||||||| ||| ||||||| |||||||||||| |||| Sbjct 537 GATCTCATGTATTCAAAGAGAGACAAAGTCTTTTACTTTACCAGTTTTAAGGGTAACTAC 596 Query 611 ATGGGTTC-TCTGTATCTCAGTAAAAAAGACGAGATCAAGTATAAAGAGATACGCCTTAG 669 |||| ||| | || |||||| || || |||| | ||||| || | |||||||| | Sbjct 597 ATGGCTTCGT-TGGATCTCACCAACAACTTCGAGCCCGAGTATCAACACTTACGCCTTCG 655 Query 670 AAACCTGCCTAAGATTCCAGAGGCAGGTTGGGAGATGTTGGATAAATGTTCCATGACCAA 729 ||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||| | Sbjct 656 AAACCTGCCTAAGATCCCAGAGGTAGGTTGGGAGATGTTGGATAAATGTTTCATGACCCA 715 Query 730 TCACTTAGTGGATTCTCCCTCTGGTGAACTTTTCTTCATCAAGTGGTACACACAGTGTAT 789 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 716 CCACTTAGTGGAGTCTCCCTCTGGTGAACTTTTCTTCATCAAGTGGTACACACAGTGCAT 775 Query 790 TCACAAAGAGGACGAAGATGGGGATTTGGAATGTCTCCACAGCAAAACTAAGCGGTTCAT 849 ||||||||||||| |||||||||||||||||| | |||||||||| || ||||||||||| Sbjct 776 TCACAAAGAGGACAAAGATGGGGATTTGGAATTTATCCACAGCAATACCAAGCGGTTCAT 835 Query 850 GGTCTTTAGGCAAGATGGGATGAGCAAAGACTTTGGTTACACTGAAGATATTGGAGATCT 909 | |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct 836 GATCTTTAGGCAAGATGGGATGAGCAAAGACTTTTGTTACACGGAAGATATTGGAGATCT 895 Query 910 CTGCATCTTCCTTGGCAAGAGTGAAGCCTTCTGTGTCACGGCAAGTTTGTACCC-AGGGC 968 |||||||||||| | |||||||||||||||||| || ||||||| ||||||| ||| | Sbjct 896 TTGCATCTTCCTTAGTAAGAGTGAAGCCTTCTGTCTCTCGGCAAGCATGTACCCTAGG-C 954 Query 969 TCAAACCTAACTCCATCTATTACCTTGGCCCTAGATTTGGTTCTTACGATCTAGCTTCTG 1028 ||||||||||||||||||||||| ||||||||||| ||||||||||| |||| ||||||| Sbjct 955 TCAAACCTAACTCCATCTATTACATTGGCCCTAGACTTGGTTCTTACAATCTGGCTTCTG 1014 Query 1029 GTACAAACAGTTCCTTCACGTTCGATCGCTTTGGTAAACCCTCGCT 1074 |||| || || ||||||| ||||||||| ||||| | |||||||| Sbjct 1015 GTACGGACCGTCCCTTCACCTTCGATCGCCTTGGTGATCCCTCGCT 1060 > Ahg917467 jgi|Araly1|917467|Al_scaffold_0008_2218 Length=1086 Score = 926 bits (501), Expect = 0.0 Identities = 882/1063 (83%), Gaps = 37/1063 (3%) Strand=Plus/Plus Query 26 ATGGCTCTG-TTCTTCAGCCGAATCTCAAAGCTTTCTGGACGCAGGAACAATGCTCGTTT 84 ||||||||| ||| ||| ||| ||| | ||| |||||||||||| ||||||||||||| Sbjct 1 ATGGCTCTGTTTC-TCAACCGCGTCTTGACGCTCTCTGGACGCAGGGACAATGCTCGTTT 59 Query 85 CTTCTCATCATTGCCTCCGTCCCCATGCTTGGTGCTGACCACTAAGAAG-TTGCGAGGGT 143 |||||||||||||| | || ||| | ||| | || | ||||||| ||| ||| || Sbjct 60 TTTCTCATCATTGCCGCAGTTCCCGTATTTGCTAATGGGCGGTAAGAAGTTTG-GAGAGT 118 Query 144 CTCCAGAGGAGGGCCTAATC-GTGCATCACAAGTTATTCGAACCGGCTACGGaaaaaaaa 202 |||| |||||| |||| | | | |||| |||||| || ||| | || ||| | | | Sbjct 119 CTCC---GGAGGGTAAAATCAG-GAAGCACAGGTTATTTGATCCGACAACTGAAGAGACA 174 Query 203 GTGTACGGCAATGAGAAGAAGTA-TCCCAAAG-AGCTTC-ATGGAGC-TCCGCTTC-TGG 257 ||||| |||| ||||||| | | |||| ||| ||| || |||| || || | || ||| Sbjct 175 GTGTATAGCAAAGAGAAGACG-ATTCCC-AAGAAGC-TCAATGG-GCAACCTC-TCGTGG 229 Query 258 GAGCATCGA-AAGGTTGGGTCGCTTTTTTCAAGGAGAAAGACATTAGTGTGCATCTCACG 316 ||||||| | |||||||| | |||| | | || | |||||| ||| |||||| ||||| Sbjct 230 GAGCATC-ACAAGGTTGGATAGCTTCTCTGGAGAACAAAGACCTTACCGTGCATATCACG 288 Query 317 GATCTGTACAAGCCTTGTG-TCTCATCTCCAAGAGTCATATCATTACCATCACTCAAGCT 375 ||| |||||||||| || | |||||||| ||| ||| |||||||| || | |||| | Sbjct 289 GATGTGTACAAGCCATG-GCTCTCATCTTCAAAAGTAATATCATTGCC-T---TCAA--T 341 Query 376 CGACTATAAACCCGCAACTCATGCCACGGA-AGTGTGTCTCTCTTCGTCTGATCCTGTCC 434 | | ||||||| |||| ||||| || || ||||| | ||||||| ||||||||||||| Sbjct 342 TGGGTTTAAACCCTCAACACATGCAAC-GAGAGTGTCTTTCTCTTCTTCTGATCCTGTCC 400 Query 435 AAGACGACTATTACGTGGCTGCAAAGTTCAATGACTATCACG-TAAGTGTATGTAGGCCT 493 ||||||||| || |||||||||||||||| | || |||| | ||||||||||||||||| Sbjct 401 AAGACGACTTTTCCGTGGCTGCAAAGTTCGACGAGTATC-GGCTAAGTGTATGTAGGCCT 459 Query 494 CGTTGGGACTCTGACTGGACTCACAACGAGACCGGTTACAGTCTTTTACCAGCCTCTGAG 553 ||||||||||| | |||||||||| |||||| | ||| |||||||||||||||||| Sbjct 460 TGTTGGGACTCTAAGTGGACTCACATCGAGACAGCTTATTCTCTTTTACCAGCCTCTGAT 519 Query 554 CTCATGTACTCCAAGAGAGACAAAGCCTTCCACTTTACGAGTTTTAAGGGTCTCTACATG 613 |||||||| |||||||||||||||| |||| ||||||| |||||||||||| ||||||| Sbjct 520 CTCATGTATTCCAAGAGAGACAAAGTCTTCTACTTTACCAGTTTTAAGGGTAACTACATG 579 Query 614 GGTT-CTCTGTATCTCAGTAAAAAAGACGAGATCAAGTATAAAGAGATACGCCTTAGAAA 672 | || || || ||||||| || || |||| | ||||| || | |||||||| |||| Sbjct 580 GCTTCCT-TGGATCTCAGCAACAACTTCGAGCCCGAGTATCAACACTTACGCCTTCGAAA 638 Query 673 CCTGCCTAAGATTCCAGAGGCAGGTTGGGAGATGTTGGATAAATGTTCCATGACCAATCA 732 |||||||||||| ||||||| |||||||||||||||||||||||||| ||||||| | || Sbjct 639 CCTGCCTAAGATCCCAGAGGTAGGTTGGGAGATGTTGGATAAATGTTTCATGACCCACCA 698 Query 733 CTTAGTGGATTCTCCCTCTGGTGAACTTTTCTTCATCAAGTGGTACACACAGTGTATTCA 792 ||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||| Sbjct 699 CTTAGTGGAGTCTCCCTCTGGTGAAATTTTCTTCATCAAGTGGTATACACAGTGCATTCA 758 Query 793 CAAAGAGGACGAAGATGGGGATTTGGAATGTCTCCACAGCAAAACTAAGCGGTTCATGGT 852 |||||||||| |||||||||||||||||| | ||||||||| || |||||||||||| | Sbjct 759 CAAAGAGGACAAAGATGGGGATTTGGAATATATCCACAGCAGTACCAAGCGGTTCATGAT 818 Query 853 CTTTAGGCAAGATGGGATGAGCAAAGACTTTGGTTACACTGAAGATATTGGAGATCTCTG 912 ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct 819 CTTTAGGCAAGATGGGATGAGCAAAGACTTTTGTTACACGGAAGATATTGGAGATCTCTG 878 Query 913 CATCTTCCTTGGCAAGAGTGAAGCCTTCTGTGTCACGGCAAGTTTGTACCC-AGGGCTCA 971 |||||||||| | ||||||||||||||||| || ||||||| |||||||| ||| |||| Sbjct 879 CATCTTCCTTAGTGAGAGTGAAGCCTTCTGTCTCTCGGCAAGCTTGTACCCTAGG-CTCA 937 Query 972 AACCTAACTCCATCTATTACCTTGGCCCTAGATTTGGTTCTTACGATCTAGCTTCTGGTA 1031 |||||||||||||||||||| |||| |||||| |||||||||||||||| |||||||||| Sbjct 938 AACCTAACTCCATCTATTACATTGGTCCTAGACTTGGTTCTTACGATCTGGCTTCTGGTA 997 Query 1032 CAAACAGTTCCTTCACGTTCGATCGCTTTGGTAAACCCTCGCT 1074 | || || ||||||| ||||||||| ||||| | |||||||| Sbjct 998 CGGACCGTCCCTTCACCTTCGATCGCCTTGGTGATCCCTCGCT 1040 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50246004606 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5