BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G55570.1 Length=742 Score E Sequences producing significant alignments: (Bits) Value Ahg887434 jgi|Araly1|887434|Al_scaffold_0848_1 538 2e-152 Ahg331885 jgi|Araly1|331885|fgenesh1_pm.C_scaffold_8001228 531 4e-150 > Ahg887434 jgi|Araly1|887434|Al_scaffold_0848_1 Length=375 Score = 538 bits (291), Expect = 2e-152 Identities = 355/384 (92%), Gaps = 12/384 (3%) Strand=Plus/Plus Query 250 GTTAGATCAAGACCACGTCAGATAAAATCCACGGCTGGTTTCGTTTCTCCGGGAAGAAGA 309 ||| |||||| ||||| ||||||||| || ||||||||||| |||||||||||||||||| Sbjct 1 GTTGGATCAAAACCACTTCAGATAAATTCTACGGCTGGTTTTGTTTCTCCGGGAAGAAGA 60 Query 310 AGAAGCCgcggcggcggcggc-ggcATGATGACGATGAGTAATCGACGG-CTCAAAACGA 367 ||||| | || | |||| | ||||||| || ||||||||| || |||| ||||| Sbjct 61 AGAAGAAGAAGC--C-ACGGCTTG-ATGATGA-GA--AGTAATCGA-GGACTCAGAACGA 112 Query 368 CGTCGGCTCTAAGTGAACTAGCTGACACGGTGGCGGAGACAGGCAAATCGGAGATTACGT 427 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 113 CGTCGGCTCTAAGTGAACTGGCTGACACGGTGGCGGAGACAGGCAAATCGGAGATTACGT 172 Query 428 GGCAGATTATAGTTGGAACCATTGCTGGAATCATACCATTCGTTGTTGCAGGTGTTGAAT 487 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 173 GGCAGATTATAGTTGGAACTATTGCTGGAATCATACCATTCGTTGTTGCAGGTGTTGAAT 232 Query 488 TCAGCAAAAGAATAATTGCACAGAAGAGATGTGAAGAATGTGGAGGAACAGGACTTGTTT 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 233 TCAGCAAAAGAATAATTGCACAGAAGAGATGTGAAGAATGTGGAGGAACAGGACTTGTTT 292 Query 548 CTC-GAGACAAAAAGTATTTTCGTTGTCCTGAATGTGGTGGGTTTCTTCCATGGCAGTCA 606 || |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 293 -TCAGAGACAAAAAATATTTTCGTTGTCCTGAGTGTGGTGGGTTTCTTCCATGGCAGTCA 351 Query 607 TGGAGAAGATTCTTTACAGGCTGA 630 |||||||||||||||||||||||| Sbjct 352 TGGAGAAGATTCTTTACAGGCTGA 375 > Ahg331885 jgi|Araly1|331885|fgenesh1_pm.C_scaffold_8001228 Length=426 Score = 531 bits (287), Expect = 4e-150 Identities = 379/421 (90%), Gaps = 16/421 (4%) Strand=Plus/Plus Query 215 CTTCTTCACTGTGTAGAGTTCCGTCTCTGTGGACCGTTAGATCAAGACCACGTCAGATAA 274 |||||||| ||||| ||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 17 CTTCTTCAATGTGTCGAGTTCCGTCTCTGTGGACAGTTGGATCAAGACCACGTCAGATAA 76 Query 275 AATCCACGGCTGGTTTCGTTTCTCCGGGAAGAAGAAGAAGCCgcggcggcggcggcggcA 334 |||| || ||| |||| |||||||||||||||||||||| | || |||| Sbjct 77 AATCTACCGCTAGTTTTGTTTCTCCGGGAAGAAGAAGAA---------GAAGCAACGGCT 127 Query 335 TGATGACGATGAGTAATCGACGGCT--CAA-AACGA-CGTCGGCTCTAAGTGAACTAGCT 390 || ||| ||| |||||||||||||| || ||| | | ||||||||||||||||| ||| Sbjct 128 TGTTGATGATAAGTAATCGACGGCTGAGAACAAC-ACCATCGGCTCTAAGTGAACTGGCT 186 Query 391 GACACGGTGGCGGAGACAGGCAAATCGGAGATTACGTGGCAGATTATAGTTGGAACCATT 450 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| Sbjct 187 GACACGGTGGCGGAGACAGGAAAATCAGAGATTACGTGGCAGATTATAGTTGGAACTATT 246 Query 451 GCTGGAATCATACCATTCGTTGTTGCAGGTGTTGAATTCAGCAAAAGAATAATTGCACAG 510 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 247 GCTGGAATCATACCATTCGTTGTTGCAGGTGTTGAATTCAGCAAAAGAATAATTGCACAG 306 Query 511 AAGAGATGTGAAGAATGTGGAGGAACAGGACTTGTTTCTCGAGACAA-AAAGTATTTTCG 569 ||||||||||||||||||||||||||||||||||||| | ||||||| ||| |||||||| Sbjct 307 AAGAGATGTGAAGAATGTGGAGGAACAGGACTTGTTTTTAGAGACAACAAA-TATTTTCG 365 Query 570 TTGTCCTGAATGTGGTGGGTTTCTTCCATGGCAGTCATGGAGAAGATTCTTTACAGGCTG 629 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 366 TTGTCCTGAGTGTGGTGGGTTTCTTCCATGGCAGTCATGGAGGAGATTCTTTACAGGCTG 425 Query 630 A 630 | Sbjct 426 A 426 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27334131489 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5