BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55580.1
Length=2173
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495645 jgi|Araly1|495645|fgenesh2_kg.8__1461__AT5G55580.1 2915 0.0
> Ahg495645 jgi|Araly1|495645|fgenesh2_kg.8__1461__AT5G55580.1
Length=1965
Score = 2915 bits (1578), Expect = 0.0
Identities = 1862/1992 (93%), Gaps = 48/1992 (2%)
Strand=Plus/Plus
Query 51 ttttttgtttgtttgttttgGAATTAGGGTTTTAGGGTATATTCGCAATCACTCTAATCG 110
|||||| ||| ||| ||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1 TTTTTTTTTTTTTTTTTTTGGAATTAGGGTTTTAGGGTATATTCGCAATCGGTCTAATTG 60
Query 111 GATAATTCCTCTACTCTGTTAACATTATCTTCTTCTTCGTTCCTACCGCAAATGGCGGGT 170
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 GATAATTCTTCTACTCTGTTAACATTATCTTCTTTTTCGTTCCTACCGCAAATGGCGGGT 120
Query 171 TTCTCACTGTACTGTTTTAAAAACCCTCGAATTCTCTTTACTCTTCCGTCGGAATCACCT 230
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 121 TTCTCACTGTACTGTTTTATAAACCCACGAATTCTCTTTACTCTTCCGTCGGAATCACCT 180
Query 231 CTCTTTGTTTTGGGTTCTGATAAATGTTCACCGGCGACGAGACGGCCG-AGTAGAAAGAC 289
||||||||||||||||||||||||| ||| ||||||||||||||| || |||||||||||
Sbjct 181 CTCTTTGTTTTGGGTTCTGATAAATTTTCGCCGGCGACGAGACGG-CGAAGTAGAAAGAC 239
Query 290 TCGTGGGTTTGTCGTGACGTACGCGCACTCTAATCCGAAGATAATCAATCCGAAGAAGAA 349
||||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 240 TCGTGGGTTCGTCGTAACGTACGCGCACTCTAACCCGAAGATTATCAATCCGAAGAAGAA 299
Query 350 GTCGAGGTATGGGCAAACGTTATCTCCATATGACAGtgatgaagatgatgatgatgatga 409
|||||||||||||||||||||||||||||||||||||||||||||||| || | | | ||
Sbjct 300 GTCGAGGTATGGGCAAACGTTATCTCCATATGACAGTGATGAAGATGAAGA-GCT-A-GA 356
Query 410 tgatgatgatgatgatgaCTGGTTACTTAATGATGATTTCGCTGAGGTTACAGAGTATGA 469
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 357 TGATGATGAAGATGATGACTGGTTGCTTAATGATGACTTCGCTGAGGTTACAGAGTATGA 416
Query 470 GAAGAAGAAGCCTAAGTCACATAAGCAAACCATTGCTAAGAAAAGTGTGAAGAAAGGGAT 529
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 417 GAAGAAGAAGCCTAAGTCACAGAAGCAAACCATTGCTAAGAAAGGTGTGAAGAAAGGGAT 476
Query 530 TGTC---AA----G-----CCTGAAGAAAGTGAGACTGATGAAGATGATCTTGATTTAGG 577
||| || | | |||||||||||||||||||||||||||||||||| ||||
Sbjct 477 CGTCAAAAATTGGGAAAAACATGAAGAAAGTGAGACTGATGAAGATGATCTTGATATAGG 536
Query 578 CATTAGTCCTAATGCCACTTCTGAGAAGAAGAAGGAGTCTTGGCGTTTAGATGGTCGAGG 637
| || | | | || || || || |||||||||||||||||||||||||||
Sbjct 537 C----GT--T-A-G-----TC-GA-AA-TAG--GGAGTCTTGGCGTTTAGATGGTCGAGG 578
Query 638 AAAGATGAGTTCGAGGAAGTATGTGGAGAAACTATACCCTCGGCTCGCAGAAGAGATTGA 697
|||| |||||| |||||| ||||| ||||||||||||||||||||| |||||||||| ||
Sbjct 579 AAAGGTGAGTTTGAGGAAATATGTCGAGAAACTATACCCTCGGCTCTCAGAAGAGATCGA 638
Query 698 TATAGATCCGAAATGTGTACCACTTCTGGATTACTTAAGCACATTTGGTTTGAAAGAGTC 757
||||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||| ||
Sbjct 639 TATAGATCCGAAATGGGTACCACTTCTCGATTACTTGAGCACATTTGGTCTGAAAGAATC 698
Query 758 ACACTTTGTTCAAATGTACGAGAGACACATGCCATCCCTTCAGATTAATGTGTTCTCAGC 817
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 699 ACACTTTGTTCAAATGTACGAGAGACACATGCCATCCCTTCAGATTAATGTCTTATCAGC 758
Query 818 TCAAGAGAGACTCGATTACTTGTTGAGTGTCGGTGTTAAACACAGAGATATCAAGAGAAT 877
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 GCAAGAGAGACTCGATTACTTGTTGAGTGTCGGTGTTAAACACAGAGATATCAAGAGAAT 818
Query 878 GCTCTTGAGACAACCACAGATACTTCAATACACTGTTGAGAACAATCTCAAAGCTCACAT 937
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 819 GCTCTTGAGACAACCACAGATACTTCAATACACAGTTGAGAACAATCTCAAAGCTCACAT 878
Query 938 TTCCTTTCTAATGGGTCTTGGCATTCCTAATTCCAAAATAGGACAGATTGTTGCTGCTAC 997
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 879 TTCCTTTCTAATGGGTCTTGGGATTCCTAATTCCAAAATAGGACAGATAGTTGCTGCTAC 938
Query 998 CCCTTCTCTCTTCTCTTACAGTGTAGAGAATTCATTGAGACCTACGATAAGGTATCTGAT 1057
||| ||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 939 CCCGTCTCTGTTCTCTTACAGTGTAGAGAATTCACTGAGACCCACGATAAGGTATCTGAT 998
Query 1058 CGAAGAGGTTGGGATAAAGGAAACCGATGTTGGAAAGGTTGTGCAACTTAGCCCTCAGAT 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 CGAAGAGGTTGGGATAAAGGAAACCGATGTTGGAAAGGTTGTGCAACTTAGCCCTCAGAT 1058
Query 1118 TCTGGTTCAGCGGCTCGACATAACATGGAACACTCGCTACATGTTCCTCTCCAAGGAGTT 1177
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1059 TCTGGTTCAGCGGCTCGACATAACATGGAACACCCGGTACATGTTCCTCTCCAAGGAGTT 1118
Query 1178 AGGAGCACCTAGAGACAGCGTAGTGAAGATGGTAAAGAAGCATCCGCAGCTTCTTCACTA 1237
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1119 GGGAGCACCTAGAGACAGCGTAGTGAAGATGGTGAAGAAACATCCGCAGCTTCTTCACTA 1178
Query 1238 CAGTATCGATGACGGGTTCTTGCCTCGAATCAATTTCCTTAGGAGCATTGGGATGTGCAA 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 CAGTATCGATGACGGGTTCTTGCCTCGAATCAATTTCCTTAGGAGCATTGGGATGTGCAA 1238
Query 1298 TTCTGATATACTGAAAGTCTTGACTAGCCTTACACAGGTTTTGTCTCTTTCACTAGAAGA 1357
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1239 TTCTGATATACTGAAAGTCTTGACTAGCCTTACACAGGTTTTGTCTCTTTCGCTAGAAGA 1298
Query 1358 TAATCTAAAACCTAAGTACATGTATTTGGTCAATGAGCTCAATAATGAAGTTCACATTCT 1417
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1299 TAATCTAAAGCCTAAGTACATGTATTTGGTCAATGAGCTCAATAATGAAGTGCACATTTT 1358
Query 1418 GACCAAATACCCAATGTACTTGAGCTTGTCCTTGGATCAAAGGATACGTCCGCGCCACCG 1477
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1359 GACCAAATACCCAATGTACTTGAGCTTGTCCTTGGATCAAAGGATACGCCCGCGCCACCG 1418
Query 1478 CTTCTTGGTTGAGTTAAAGAAAGTGCGGAAAGGGCCATTCCCTCTTAGTTCATTAGTTCC 1537
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1419 CTTCCTGGTTGAGTTAAAGAAAGTGCGGAAAGGGCCGTTCCCTCTTAGTTCATTAGTTCC 1478
Query 1538 AAATGATGAAAGCTTTTGTCAGCAATGGGCTGGAACCAGTGTAGATACGTATCTCGCCTT 1597
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1479 AAATGATGAAAGCTTTTGTCAGCAATGGGCAGGAACCAGTGTAGATACGTATCTCGCCTT 1538
Query 1598 TCGCCAGAGGCTGTTACTCAAGGAGTTTGCAAACAAGTATGACAAGAGAGGATGATGATG 1657
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1539 TCGCCAGAGGCTGTTACTCAAGGAGTTTGCAAACAAGTATGACAAGAGAGTATGATGATG 1598
Query 1658 GGAATCTCTT-CTTCTTGATTACCGACAATAAGTCAACACTTTGGTTAGTTTCCT-GCTT 1715
| |||||||| || ||||||||||||| | |||||||||||||||||| ||| || ||||
Sbjct 1599 GAAATCTCTTGCT-CTTGATTACCGACTACAAGTCAACACTTTGGTTACTTTTCTTGCTT 1657
Query 1716 CAAATCCGGTAAAAGAGGTTCATATGCAGAACCTGTGAATGACTCATTAACTTCTGGTGA 1775
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1658 CAAATCCGGTAAAAGAGGTTCATAAGCAGAACCTGTGAATGAC-CATTAACTTCTGGTGA 1716
Query 1776 AACGCGAGATACTGCAAAGATTGAA--CTTTTTCAGGA-AAGTAACTCCAGAGAAGCCGG 1832
||||||| ||||||||||||| || ||||||||||| ||| || ||||||||||||||
Sbjct 1717 AACGCGA--TACTGCAAAGATTAAAAACTTTTTCAGGACAAGAAAATCCAGAGAAGCCGG 1774
Query 1833 CTTGGCACAGACATCATATTTGTTT-ACCAGATGAGAGTTTCCTCAATCTTTTCCAGGTT 1891
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1775 CTTGGCACAGACATCATATTTGTTTTACCAGATGAGAGTTTCCACAATCTTTTCCGGGTT 1834
Query 1892 TTGTCTACATTTTAAGTTCTGCTATGTCT-TGTGGTAAAGTTTTACTCTCTTTTTCTCCT 1950
||| |||||||| ||||||||| |||| | |||||||||| |||||||||||||||||||
Sbjct 1835 TTGGCTACATTTCAAGTTCTGCAATGT-TATGTGGTAAAGGTTTACTCTCTTTTTCTCCT 1893
Query 1951 CTTCTTTCTAATGAATCATGGAGAAGAGAAA-AGAATCCATGTGTAGTATTTTTTGGCCT 2009
|||||||||||||||||| | |||||||||| | |||| ||||||||||||||||||||
Sbjct 1894 CTTCTTTCTAATGAATCACGAAGAAGAGAAACACAATCTGTGTGTAGTATTTTTTGGCCT 1953
Query 2010 AGTATATATATA 2021
||||||||||||
Sbjct 1954 AGTATATATATA 1965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81779756015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5