BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G55610.1 Length=1416 Score E Sequences producing significant alignments: (Bits) Value Ahg495650 jgi|Araly1|495650|fgenesh2_kg.8__1466__AT5G55610.1 2025 0.0 > Ahg495650 jgi|Araly1|495650|fgenesh2_kg.8__1466__AT5G55610.1 Length=1285 Score = 2025 bits (1096), Expect = 0.0 Identities = 1228/1291 (95%), Gaps = 12/1291 (1%) Strand=Plus/Plus Query 131 AGAGAGATTGATTATTGC-ATCGAATCAAGCTTGGTTTGTTAGTAATGGCGGGAATAGCT 189 |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGAGAGATTGATTATT-CGATCGAATCAAGCTTGGTTTGTTAGTAATGGCGGGAATAGCT 59 Query 190 TTAGTTTTAGATCTACTGAAGAAATCTCAATCTAAGAACACTCTCCACTCATCTTCCTTC 249 ||||||||||||||||||||||||||||||| ||| ||| ||| ||||||||||||||| Sbjct 60 ATAGTTTTAGATCTACTGAAGAAATCTCAATCCAAGCACAGTCTTCACTCATCTTCCTTC 119 Query 250 TATTCCGCCTCCGCCGCCGCTGTTTCTGCTGCCGCCTCTGCTCCTTTTGCGTCTAGGTTT 309 | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 120 TCTTCCGCCTCCGCCGCCGCTGTTTCTGCTGCCGCCACTGCTCCTTTTGCGTCTAGGTTT 179 Query 310 CTCTTCGGTTCTTTTGAGCCTAGAGTTGCGTATTGTGATGCTGCTGCTGCAATAGATGAT 369 ||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||| Sbjct 180 CTCTTCGGTTCTTTTGAGCCTCGAGTTGCGTATTGTGATGCCGCTGCTGGAATAGATGAT 239 Query 370 GATTACCTTGGTGCTATACGGAAAATGTCTGCGGATGTTTTGCAGCGTCAACCCCTTGCG 429 || ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 240 GACTACCTTGGTGCTATACGGAAAATGTCTGCGGATGTTTTGCAGCGTGAACCGCTTGCA 299 Query 430 TATATTTCTAGGTCCAAGGAATACAATATCCAGCCAAAACCAGTTCTCTCGGCCTTTGAG 489 ||||| ||||| ||||||||||||||||||||||| |||||| || |||||||||||||| Sbjct 300 TATATCTCTAGTTCCAAGGAATACAATATCCAGCCGAAACCAATTTTCTCGGCCTTTGAG 359 Query 490 TTCAGGGCACTTGCAATGACTACAGTGAGATCCCTTTTGATGTTTTATTTGCCTCTTTTG 549 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 360 TTCAGGGCACTTGCAATGACTACAGTGAGATCCCTCCTGATGTTTTATTTGCCTCTTTTG 419 Query 550 GAGCCTAAAACGGCTTCAGAGGATGATGATGATTTCCTAAACAATGCTGCAGAAGAAAAC 609 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 420 GAGCCTAAAACGGCTTCTGAGGACGATGATGATTTCCTAAACAATGCTGCAGAAGAAAAC 479 Query 610 CGCCACACAGACTTGATTGTTCCTCTTAAAAAGTCAGCAAAGCAAATTGCCCGTGAGACC 669 |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 480 CGCCGCACAGACTTGATTGTTCCTCTTAAAAAGTCAGCCAAGCAAATTGCCCGTGAGACC 539 Query 670 ACAGTTGTGACCACTCGGAGAGTCCTTGAAAGGCTGGCTCTGAGTTATGTCTCACAGCGT 729 ||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||| Sbjct 540 ACAGTTGTGACCACTCGGAGACTCCTTGAAAGGCTCGCTTTGAGTTATGTCTCACAGCGT 599 Query 730 ATGGCATGGAAACTTCTAAAGGATGTGCCTCAGTCGGCTTTACGCAAGGCTCAGAGAGGG 789 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 ATGGCATGGAAACTTCTAAAGGATGTGCCTCAGTCGGCTTTACGCAAGGCTCAGAGAGGG 659 Query 790 TTGCCGACACATGTATATATCTTTAAAGTCAGCCAAACAACTCTTAGAGGTCACTTCCTG 849 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 660 TTGCCGACACATGTATACATCTTTAAAGTCAGCCAAACAACTCTTAGAGGTCACTTCCTG 719 Query 850 GGAATCGCAGCATCATGGGTAGTTCAAGTAGGCATTGAAATCTACAGATGTGTGTTCCCG 909 ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct 720 GGAATTGCAGCATCATGGGTAGTTCAAGTAGGCATTGAAATATACAGATGTGTGTTCTCG 779 Query 910 AATGTTAAACCCGAGGAAGAAGAAGAAGAGGAGAAAGTCGAGATATCACAGCAAGCTAAG 969 |||||||||||||||||||||||||| || | || |||||||||||||||||||||||| Sbjct 780 AATGTTAAACCCGAGGAAGAAGAAGAGGA--ACAA-GTCGAGATATCACAGCAAGCTAAG 836 Query 970 GATCTCGGAAACAAAGTTGTGGGTATCACAGTACGATGTGGCGCGTCCTTAGTATTTGCT 1029 || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 837 GACCTCGGAAACAAAGTTGTGGGTATCACAGTACGATGTGGCGCTTCCTTAGTGTTTGCT 896 Query 1030 GCCATTGGAGCCGGGATATGTTCTTGCCTTATCCGTCCCTCCACGGGCCAATGGATCGGT 1089 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || Sbjct 897 GCCATTGGAGCCGGTATATGCTCTTGCCTTATCCGTCCCTCCACGGGCCAATGGATTGGC 956 Query 1090 TGCGCGCTGGGAGACTTGGCTGGTCCGATGGTTGTTTCGGTTTGCCTGCAGAAGACTCTT 1149 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 957 TGCGCGCTGGGGGACTTGGCTGGTCCGATGGTTGTTTCGGTTTGCCTGCAGAAGACTCTT 1016 Query 1150 CAAGCTGATTATTAAGTTCTTGTGTGGAAATTGAATTCTTCTACTTGAATCTTGATGATC 1209 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1017 CAAGCTGATTATTAAGTCCTTGTGTGGAAATTGAATTCTTCTACTTGAATCTTGATGATC 1076 Query 1210 CAAATGAAATCATAGAGCTTGTTTTTTGTTTCTGAAATTT-CTTATTGTCTTCACTGAA- 1267 ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 1077 CAAATGAAATCATAGAGCTTGTTTTTTTTTTCTGAAATTTTCTTATTGTCTTCACTGAAA 1136 Query 1268 CCTTAAAAACAATGATCAATAGATTTCTCAAAATGTACCTACTTTTGACAACAGCACAAT 1327 ||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 1137 CCTTAAAAACATTGATCAATAGACTTCTCAACATGTACCTACTTTTGACAACAGCACAAT 1196 Query 1328 AAGTCAGGTatttattttc-ctcggattttagttttgtatctgcgatttttct-tctctt 1385 ||||||||||||||||||| || |||||| ||||||| ||||| |||||||| |||||| Sbjct 1197 AAGTCAGGTATTTATTTTCACT-GGATTT-AGTTTTGGATCTGAGATTTTTCCCTCTCTT 1254 Query 1386 ttt-acttttgtaagtagggattttGTGAAC 1415 ||| ||||||||||||| ||||||||||||| Sbjct 1255 TTTTACTTTTGTAAGTATGGATTTTGTGAAC 1285 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52945440550 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5