BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55710.1
Length=773
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950227 jgi|Araly1|950227|scaffold_802114.1 1122 0.0
Ahg495656 jgi|Araly1|495656|fgenesh2_kg.8__1472__AT5G55700.1 122 3e-27
> Ahg950227 jgi|Araly1|950227|scaffold_802114.1
Length=670
Score = 1122 bits (607), Expect = 0.0
Identities = 650/671 (97%), Gaps = 2/671 (0%)
Strand=Plus/Plus
Query 7 TGAAACAAAAACAGAGCAAAATGGCAATAATATCTCAGTTTTTTGCTCCATTACCATCTC 66
||||||| ||||||||| |||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1 TGAAACAGAAACAGAGCTAAATGGCAATAATATCTCAGCTTTTTGCTCCATTGCCATCTC 60
Query 67 TCACCGGAACCCTAACCCTAACCGGTCGTTCTTTTCTCCCTCTAAAC-CTTGATACCCAA 125
||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct 61 TCACCGGAACCCTAACCCTAACCGGTCGTTCTTTTCTCCCTCTAAACTCTAG-TACCCAA 119
Query 126 TTCCCAAAACCTAGACTTTCCAGGGACAGAGCCGCCACACTCGTACTCCAATCCAAGGGT 185
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 120 TTCCCAAAACCTAGACTTTCCAGAGAAAGAGCCGCCACACTCGTACTCCAATCCAAGGGT 179
Query 186 GATGATTCCGTCGATGCATCGGATCGGATAATCTCAGCCGTCTGTTACTTCTACCCATTC 245
|| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 180 GACGATTCCGTCGACGCATCAGATCGGATAATCTCAGCCGTCTGTTACTTCTACCCATTC 239
Query 246 TTCGATGGGATTCAATACGGCAAATTCATCATCACACAGTACCAACCTTTTCAGATTCTC 305
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 240 TTCGATGGGATTCAATACGGTAAATTCATCATCACACAGTACCAACCATTTCAGATTCTC 299
Query 306 ATCCAACCTTTGTTTCCCGCCATCAGAGCTTTCAAGAGCTTCCCTTTCAATGGGTTTCTT 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATCCAACCTTTGTTTCCCGCCATCAGAGCTTTCAAGAGCTTCCCTTTCAATGGGTTTCTT 359
Query 366 ATCTTCATCACTCTCTACTTCGTCGTTGTGAGGAACCCTAATTTCAGCAGGTACGTCAGG 425
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 360 ATCTTCATCACTCTCTACTTCGTCGTCGTGAGGAACCCTAATTTCAGCAGGTACGTTAGG 419
Query 426 TTCAACACGATGCAGGCGATTGTGCTTGATGTGTTGTTGATTTTCCCGGATTTGCTTGAG 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTCAACACGATGCAGGCGATTGTGCTTGATGTGTTGTTGATTTTCCCGGATTTGCTTGAG 479
Query 486 AGGAGCTTTAATCCTAGAGATGGGTTTGGTTTAGATGTGGTGATGAGTTTGGACAGCACA 545
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGGAGCTTTAATCCAAGAGATGGGTTTGGTTTAGATGTGGTGATGAGTTTGGACAGCACA 539
Query 546 GTGTTCCTCTTCTTGCTTGTCTCTTTGATCTATGGATTCTCTGCTTGCTTGTTTGGTCTG 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTGTTCCTCTTCTTGCTTGTCTCTTTGATCTATGGATTCTCTGCTTGCTTGTTTGGTCTG 599
Query 606 ACCCCGAGGTTGCCTCTTGTTGCCGAGGCTGCTGATAGGCAAGTCCTTTGATTCAATAAT 665
| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 600 ATCCCGAGGTTGCCTCTTGTTGCTGAGGCTGCTGATAGGCAAGTCCTTTGATGCAATAAT 659
Query 666 ATCTTTGTATG 676
|| ||||||||
Sbjct 660 ATGTTTGTATG 670
> Ahg495656 jgi|Araly1|495656|fgenesh2_kg.8__1472__AT5G55700.1
Length=1958
Score = 122 bits (66), Expect = 3e-27
Identities = 71/73 (97%), Gaps = 2/73 (3%)
Strand=Plus/Minus
Query 702 TCTGTATTGGATC-GCTTTCTGATAATCAAAACATACAATGTAACTTTTTGATCCAATGA 760
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1958 TCTGTATTGGATCTG-TTTCTGATAATCAAAACATACAATGTAACTTTTTGATCCAATGA 1900
Query 761 AAAAGGTTTCTGC 773
|||||||||||||
Sbjct 1899 AAAAGGTTTCTGC 1887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28515941916
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5