BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55850.2
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495666 jgi|Araly1|495666|fgenesh2_kg.8__1482__AT5G55850.1 472 3e-132
> Ahg495666 jgi|Araly1|495666|fgenesh2_kg.8__1482__AT5G55850.1
Length=778
Score = 472 bits (255), Expect = 3e-132
Identities = 282/295 (96%), Gaps = 1/295 (0%)
Strand=Plus/Plus
Query 295 GGACAAAGGTCGTCCCTTGCCAAAATTTGGTGAATGGGATGTGAATGATCCAGCATCAGC 354
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 212 GGACAAAGGTCGTCCCTTGCCGAAATTTGGTGAATGGGATGTGAATGATCCAGCATCAGC 271
Query 355 AGAAGGTTTTACAGTGATATTCAACAAAGCTAGGGATGAGAAAAAGACCGGTGGCAAACC 414
||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 272 AGAAGGTTTCACAGTGATATTCAACAAAGCTAGGGATGAGAAAAAGACTGGGGGCAAACC 331
Query 415 GGGATCACCCGGTAAATCCAGTGAGGGTCATGTTAAATCTGGAGGAGGAGATCCTAGTAA 474
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 332 TGGATCACCCGGTAAATCCAGTGAGGGTCATGCTAAGTCTGGAGGAGGAGATCCTAGTAA 391
Query 475 ACCTCAGCCTGTaaaaaaaaTGGCTCTGCTGCATGCAAGCTCCAGCTGTGGACTCTTGAC 534
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 392 ACCTCAGCCTGTAAAAAAAATGGCTCTGCTGCATGCAATCTCCAGCTGTGGACTCTTGAC 451
Query 535 AGACACAAAGATGGATTTGCTTGCTGCTaaaaaaaaaGTCACAGTGCTTACACAT 589
||||||||||||||||||||||||||| ||| || ||||||||||||||||||
Sbjct 452 AGACACAAAGATGGATTTGCTTGCTGCCCAAAGAAT-GTCACAGTGCTTACACAT 505
Score = 346 bits (187), Expect = 2e-94
Identities = 259/289 (90%), Gaps = 24/289 (8%)
Strand=Plus/Plus
Query 624 GTCTTTCTTGAAATTACCCACACACACaaaaaaaaaaGGTTCCTAAGATGATTTGGAGC- 682
|||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||
Sbjct 512 GTCTTTCTTGAAATTACCCACACA-AAAAAAAAAAAAAGTTCCTAAGATGATTTGGAGCT 570
Query 683 TCACCCACCTTTAGTATCACGATTATGATTCCTTCTTCTTTGAAGTTGTTTCTTCTTCTT 742
||| |||||||||||||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct 571 TCA-CCACCTTTAGTATCACGATTATGATT-C--CTTCTTTGAAGTTGTTTGTTCTTCTT 626
Query 743 AAAATGCTGTAAAATCGTGTCT-CCATTTTATTGGaaaaaaaaaaggaagaaaaacgaaa 801
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||| ||
Sbjct 627 AAAATGCTGTAAAATCGTGT-TGCCACTTTATTGGAAAAAAAAAAGGAAGAAAAA--AAG 683
Query 802 aaaaaCACAGTTACTGTGTCTATATGTAATGATTCTCTTGGGGTCtttttgttttttgat 861
|||||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 684 AAAAACACAGTTACTGTGTCTATATGTAATGATTCTCTTGGG-T-TTT----------AT 731
Query 862 tttatggtgtctttttccttgattttttAAATTATATTATCTTGGGCTC 910
||||||||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct 732 TTTATGGTGTCTTTTTCCTTGATTTTT-AAAT-ATATTATCTTGTGCTC 778
Score = 250 bits (135), Expect = 1e-65
Identities = 208/238 (87%), Gaps = 26/238 (11%)
Strand=Plus/Plus
Query 10 agaagcaaaaaagaatttttatagaaagaaaggaaaaatcagaaaaggagagaaaaatta 69
||||||||||||||| |||| | || || |||||||| |||||||||| |||||||
Sbjct 1 AGAAGCAAAAAAGAA-TTTT-T----AG-AA-TAAAAATCAAAAAAGGAGAG-AAAATTA 51
Query 70 aaaaagtctctcttttctctttttcttcttcgtctcccatattctccgatcaaaaatata 129
|||||||||||||||| || || || ||| | | | | ||||||||||||||||||
Sbjct 52 AAAAAGTCTCTCTTTT-TC---TT-TT-TTC-T-T--C-T-TTCTCCGATCAAAAATAT- 98
Query 130 tttctctctcACTTTCCTTGGTTTTCTCGGCGGCTTCTTCTTCTCCTATTTCTCCCTCAA 189
||| ||||||||||||||||||||||||||||||||||||| || ||||||| ||| |||
Sbjct 99 TTT-TCTCTCACTTTCCTTGGTTTTCTCGGCGGCTTCTTCTCCT-CTATTTC-CCC-CAA 154
Query 190 ATCGTTTTCTCCAGTTTTCTTGGGATAAATCTTCCTCCTTTCTGCAGACGCCATGTCG 247
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 ATCGTTTTCTCCATTTTTCTTGGGATAAATCTTCCTCCTTTCTGCAGACGCCATGTCG 212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33929396130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5