BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55950.1
Length=1677
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495677 jgi|Araly1|495677|fgenesh2_kg.8__1493__AT5G55950.1 2098 0.0
Ahg946791 jgi|Araly1|946791|scaffold_703020.1 97.1 4e-19
> Ahg495677 jgi|Araly1|495677|fgenesh2_kg.8__1493__AT5G55950.1
Length=1475
Score = 2098 bits (1136), Expect = 0.0
Identities = 1391/1508 (92%), Gaps = 41/1508 (3%)
Strand=Plus/Plus
Query 1 GAAACAATTATACCATGACATTAAAATCCAGAtttttttCAGTCATTTTCGTATTATTT- 59
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||
Sbjct 1 GAAACAATTATACCATGACATTAAAATCCAGATTTTATTCATTCATTTTCGTATT-TTTG 59
Query 60 GTTTAAAAGTAAAG-TTTTTCTTCCATCAAAATGGAAAATGTGATCTGGtttttttCTTA 118
|||||||||||||| |||||| ||||| |||| |||||||||||||||| |||||| |
Sbjct 60 GTTTAAAAGTAAAGTTTTTTCCTCCATTAAAACGGAAAATGTGATCTGG-GTTTTTCATC 118
Query 119 G-AAGATATTAAAACAATCGGAGAGAGGATTGCAAAttttttatttttGTTAATTTGCTG 177
| ||| |||||||||||| | |||| || | || ||| || || |
Sbjct 119 GAAAG-GATTAAAACAATC-G-GAGA-GA--G--AA----TTA-------CAA-TT--T- 155
Query 178 TGTGATGGGTCTGGTTGATTCTTTGTTAGGAAAAGATGCAAGAAAATTTCTCAAAAGGAA 237
| ||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||
Sbjct 156 T-TGATGGGTCTGGTTGATTCTTTGTTTGGAAAAGATGCAAGGAAATTTCTCAAACGGAA 214
Query 238 AGATAGTGATGCTGCAGAAGCAGGACGAGCTTTGGAAGAACTCAGAAGTTCTTTGTACAA 297
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 215 AGATAGTGATGCTGCAGAAGCAGGTCGAGCTTTGGAAGAACTCAGAAGTTCTTTATACAA 274
Query 298 TGAGCTTAAAACATCAGAAGGAGCTAAAAGGCAACAACAGAGATTTTGTGGCCCTGTTGT 357
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 275 TGAGCTTAAAACATCAGAAGGAGCTAAACGGCAACAACAGAGATTTTGTGGCCCTGTTGT 334
Query 358 TGCAATGTCCTTTAATTTCGTTGTTGCTGTTGGAATCATCCTTGCCAATAAATTAGTGAT 417
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 335 TGCAATGTCCTTCAATTTCTTTGTTGCTGTTGGAATCATCCTTGCCAATAAATTAGTGAT 394
Query 418 GGGAAGAGTTGGATTCAATTTCCCAATCTTTCTAACATTGATTCATTATACCGTGGCTTG 477
||||||||||||||||||||| ||||||||| ||||||||||||| ||||| || |||||
Sbjct 395 GGGAAGAGTTGGATTCAATTTTCCAATCTTTTTAACATTGATTCACTATACTGTTGCTTG 454
Query 478 GATTCTTTTAGCTTTCTTCAAGTCTCTCTCTTTGCTTCCAATGTCTCCTCCATCAAAGAC 537
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 GATTCTTCTAGCTTTCTTCAAGTCTCTCTCTTTGCTTCCAATGTCTCCTCCATCAAAGAC 514
Query 538 AACACCTTTCTCATCTCTTTTCTCTCTTGGAGCTGTCATGGCCTTTGCTTCTGGACTCGC 597
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 515 TACACCTTTCTCATCTCTCTTCTCTCTTGGAGCTGTCATGGCCTTTGCTTCTGGACTCGC 574
Query 598 TAATACCAGTCTCAAACACAATAGCGTTGGATTCTATCAAATGGCTAAGATCGCAGTTAC 657
|||||| |||||||||||||| ||||||||||||||||| |||||||||||||| || ||
Sbjct 575 TAATACTAGTCTCAAACACAACAGCGTTGGATTCTATCAGATGGCTAAGATCGCTGTGAC 634
Query 658 ACCAACGATTGTTCTTGCCGAGTTTGTTCTCTTCAAGAAAACCATTTCTTCCACAAAGGT 717
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 635 ACCAACGATTGTTCTTGCAGAGTTTGTTCTCTTCAAGAAAACCATTTCTTCCACCAAGGT 694
Query 718 CATGGCATTAGCTGTAGTATCTCTAGGTGTGGCAATCGCGACAGTGACGGATCTAGAATT 777
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 695 CATGGCATTAGCTGTAGTATCTCTAGGCGTGGCAATCGCGACAGTGACAGATCTAGAATT 754
Query 778 TAATTTGTTTGGTGCATTAGTTGCTGTTGCTTGGATTATTCCAAGTGCCATTAACAAAAT 837
|||||||| || ||||| |||||||||||||||||||| ||||||||||| || |||||
Sbjct 755 CAATTTGTTCGGCGCATTGGTTGCTGTTGCTTGGATTATCCCAAGTGCCATCAATAAAAT 814
Query 838 ACTCTGGTCTAATCTTCAGCAACAAGCTAATTGGACTGCCCTAGCATTGATGTGGAAGAC 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 ACTCTGGTCTAATCTTCAGCAACAAGCTAATTGGACTGCCCTAGCATTGATGTGGAAGAC 874
Query 898 AACACCGTTTACTGTCTTCTTCTTGTTGGCTCTCATGCCATGGCTTGACCCACCTGGAGT 957
|||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 875 AACACCGTTTACTGTCTTCTTCTTATTGGCGCTTATGCCATGGCTTGACCCACCTGGAGT 934
Query 958 TTTGCTTTTCAAATGGGATTTAACTAACTCTTCCGCAATCCTCATCTCGGCTCTTCTCGG 1017
|||||| ||||||||||||||| ||||||||| ||||||||| |||| |||||||||||
Sbjct 935 TTTGCTGTTCAAATGGGATTTAGGTAACTCTTCAGCAATCCTCGTCTCAGCTCTTCTCGG 994
Query 1018 CTTTCTTCTCCAATGGTCTGGTGCACTCGCTCTCGGGGCAACATCAGCAACATCTCATGT 1077
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 995 CTTTCTTCTCCAATGGTCTGGTGCACTCGCTCTCGGGGCAACCTCGGCAACATCTCATGT 1054
Query 1078 AGTATTAGGGCAATTCAAGACATGTGTGATCTTGCTTGGAGGTTACGTTATCTTCGGCTC 1137
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1055 AGTATTAGGGCAATTCAAGACATGTGTGATTTTGCTTGGAGGTTACGTTATCTTCGGCTC 1114
Query 1138 TGA-CCCTGGTTTCATCAGCATCTGCGGCGCTATCGCAGCTCTTGGAGGCATGTCTGTCT 1196
|| ||| ||| ||||||||||||| || ||| | || ||||||| |||||||||||||
Sbjct 1115 CGATCCC-GGTATCATCAGCATCTGTGGAGCTGTGGCGGCTCTTGCCGGCATGTCTGTCT 1173
Query 1197 ACACGTGGCTCAATCTTCCGGGGAAATCCATCGATCACATGTCAAACAAGCAGCTGCCAA 1256
|||||||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||
Sbjct 1174 ACACGTGGCTCAATCTTCCGGGGAAATCCATCGATCACGTTTCAAATAAGCAGCTTCCAA 1233
Query 1257 AGCAAAACGTCACCGTTTCAAAACCTAAAGCCGAGGCTGACGACGGAGGAGGAGAGACCG 1316
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 AGCAAAACGTTAACGTTTCAAAACCTAAAGCCGAGGCTGACGACGGAGGAGGAGAGACCG 1293
Query 1317 GAGTAACCGTAGTTTCTGTTGACCCACTTCTCTCCAAGACGATAACTGCAAATATCGTAT 1376
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 GAGTAACAGTAGTTTCTGTTGACCCACTTCTCTCCAAGACGATAACTGCAAATATCGTAT 1353
Query 1377 AGTTTTACAATTTGATTAGATTGCCAAAGAGaaaaaaaaTGAGTTTTACTTTTTCTT--C 1434
||||||| || || ||||||| ||||||||||||||| ||||||| ||||||| || |
Sbjct 1354 AGTTTTATAACTTAATTAGAT-GCCAAAGAGAAAAAA--TGAGTTT-ACTTTTTTTTTTC 1409
Query 1435 -TTCAGGTTTTAGTTTGTAAAATTGGTTCAGTTTTGATATCAAATTAGTGTAGTAAA-GT 1492
||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| |
Sbjct 1410 CTTCAGGTTT-AGTTTGTAAAATTGGTTCAATTTTGATATCAAATTAGTTTAGTAAAAG- 1467
Query 1493 ATACTAAT 1500
||||||||
Sbjct 1468 ATACTAAT 1475
> Ahg946791 jgi|Araly1|946791|scaffold_703020.1
Length=234
Score = 97.1 bits (52), Expect = 4e-19
Identities = 69/77 (90%), Gaps = 2/77 (3%)
Strand=Plus/Plus
Query 543 CTTTCTCATCTCTTTTCTCTCTTGGAGCTGTCATGGCCTTTGCTTCTGGA-CTCGCTAAT 601
||||||| || || ||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct 94 CTTTCTCCTCACTCTTCTCTCTTGGAGCTGTCATGGCCTTTGCTT-TGGGGCTTGCTAAT 152
Query 602 ACCAGTCTCAAACACAA 618
|| ||||||||||||||
Sbjct 153 ACAAGTCTCAAACACAA 169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62886994495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5