BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55970.1
Length=1378
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495680 jgi|Araly1|495680|fgenesh2_kg.8__1496__AT5G55970.2 1772 0.0
Ahg492150 jgi|Araly1|492150|fgenesh2_kg.7__1583__AT4G26580.1 732 0.0
> Ahg495680 jgi|Araly1|495680|fgenesh2_kg.8__1496__AT5G55970.2
Length=1582
Score = 1772 bits (959), Expect = 0.0
Identities = 1047/1090 (96%), Gaps = 3/1090 (0%)
Strand=Plus/Plus
Query 79 AAGGTCTAAAATCTTGAAGGATTCAAAAATTTCCGATGAATACACGTTATTCCAATCAGC 138
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 486 AAGGTCTAAAATCTTGAAGGATTCAAAAATTTCCGATGAATACACGTTATTCCGTTCAGC 545
Query 139 CGGAGTTATCTTCTAGTAATATCACGATCACTATTTCATCGTCTGCTTTGTTAAGCTCCT 198
||||||||||||| | ||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 546 CGGAGTTATCTTCCAATAATATCTCGATCACTATTTCATCGTCTGCTTCGTTAAGCTCCT 605
Query 199 CACCGCGAGGCGATAACAGTCATGTTGCTGCTGCTAATGGTCAAGAGAGGTCTCCATCTT 258
||||||||||||| |||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 606 CACCGCGAGGCGAAAACAGTCATGTTGCTGATGGTAATGCTCAAGAGAGGTCTCCATCTT 665
Query 259 CGTTTTATATAAGGCTGGCTATGAAGGTATCTAGAGCTAGATGGTTCATCTTCTTGAGAA 318
| ||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 666 CCTTTTACATAAGGTTGGCTATGAAGGTATCTAGAGCTAGATGGTTTATCTTCTTGAGAA 725
Query 319 GAGTGTTTCACTACCAGAACGGTTCAAGATCTGACCTTGGGTCTAATCCTTTCAATTCTA 378
||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 726 GAGTGTTTCACTATCAGAACGGTTCAAGATCCGACCTTGGCTCCAATCCTTTCAATTCTA 785
Query 379 GCACTTGGATGATGTCTGAGCTCATTGCTCTACTTGTTCAGCTCACTGTGATAACATTCA 438
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 786 GCACTTGGATGATGTCTGAGCTCATTGCTCTGCTTGTTCAGCTCACTGTGATAACATTCA 845
Query 439 CTCTAGCTATCTCCAAAGAAGAGAGACCAATTTGGCCAGTGAGGCTATGGATCACAGGAT 498
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 846 CACTAGCTATCTCCAAAGAAGAGAGACCTATTTGGCCAGTGAGGCTATGGATCACAGGAT 905
Query 499 ACGATGTGGGATGTCTTTTGAATCTCATGCTGTTATATGGTCGGTATCGTCAACTAGACA 558
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 906 ACGATGTGGGATGTCTTCTAAATCTCATGCTGTTATATGGTCGGTATCGTCAACTAGACA 965
Query 559 TTAACCAAGGAAATGGGTTTGTCCTTGGCGATGTTGAGCAGCAACAGAGAGGCAGAGAAG 618
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 966 TTTACCAAGGAAATGGGTTTGTCCTCGGCGATGTTGAGCAGCAACAGAGAGGCAGAGAAG 1025
Query 619 AAACTAGGTCCTCTCACTTGATGAACAAATGCAGAACGTCGCTAGAGCTTTTCTTTGCGA 678
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1026 AAACAAGGTCCTCTCACTTGATGAACAAATGCAGAACGTCGCTAGAGCTTTTCTTTGCAA 1085
Query 679 TTTGGTTTGTGATTGGAAATGTTTGGGTGTTCGATTCTAGGTTTGGTTCTTTCCACCATG 738
|||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1086 TTTGGTTTGTGATTGGGAATGTTTGGGTTTTCGATTCTAGGTTCGGTTCTTTCCACCATG 1145
Query 739 CTCCCAAGCTTCACGTTCTCTGCGTCTCTCTTTTAGCTTGGAACGCTATCTGCTATTCCT 798
|||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1146 CTCCCAAGCTTCACGTCCTCTGCGTCTCTCTTCTATCTTGGAACGCTATCTGCTATTCCT 1205
Query 799 TTCCCTTTCTTCTCTTCCTCTTCCTCTGTTGCCTTGTTCCTCTCATAAGTAGCCTCCTTG 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 TTCCCTTTCTTCTCTTCCTCTTCCTCTGTTGCCTTGTTCCTCTCATAAGTAGCCTCCTTG 1265
Query 859 GATATAACATGAACATGGGATCCTCAGACAGAGCAGCATCAGATGACCAAATCTCTAGTC 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 GATATAACATGAACATGGGATCCTCAGACAGAGCAGCATCAGATGACCAAATCTCTAGTC 1325
Query 919 TCCCTAGCTGGAAATTCAAACGAATCGACGATAGTGCTTCTGATTCTGATTCAGATTCAG 978
||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||
Sbjct 1326 TCCCTAGCTGGAAATTCAAACGAATCGACGAAAATGCTTCTGATTCAGATTCAGATTCAG 1385
Query 979 CTACTGTAACTGATGATCCAGAGTGTTGTATATGTTTGGCAAAGTATAAAGACAAAGAAG 1038
|||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1386 CTACTGCAACCGATGATCCAGAGTGTTGTATATGTTTGGCGAAGTATAAAGACAAAGAAG 1445
Query 1039 AAGTAAGGAAGCTTCCATGTTCA-CATAAGTTTCACTCAAAGTGTGTAGATCAATGGCTT 1097
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1446 AAGTAAGGAAGCTTCCATGT-CAACATAAGTTTCACTCAAAGTGTGTAGATCAATGGCTT 1504
Query 1098 CGTATCATCTCTTGTTGTCCTCTCTGCAAACAAGATCTTCCAAGATGACAAAGCAAATAC 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1505 CGTATCATCTCTTGTTGTCCTCTCTGCAAACAAGATCTTCCAAGATGACAAAGCAAAAAC 1564
Query 1158 CC-TAAAAGC 1166
|| |||||||
Sbjct 1565 CCCTAAAAGC 1574
> Ahg492150 jgi|Araly1|492150|fgenesh2_kg.7__1583__AT4G26580.1
Length=1161
Score = 732 bits (396), Expect = 0.0
Identities = 747/912 (82%), Gaps = 41/912 (4%)
Strand=Plus/Plus
Query 243 GAGAGGTCTCCATC-T-T-CGTT-TTATATAAGGCTGGCTATGAAGGTATCTAGAGCTA- 297
||||| |||||||| | | | || || || || || || |||| |||||||||||| |
Sbjct 242 GAGAGCTCTCCATCTTCTACCTTCTT-GATGAGACTTGCCATGAGGGTATCTAGAGCAAC 300
Query 298 GATGGTTCATCTTCTTGAGAAGAGTGTTTCACTACCAGAACGGTTCAAGATCTGACCTTG 357
| |||||||| |||||||||||||| ||||| |||||||||| |||||||| || ||||
Sbjct 301 G-TGGTTCATTTTCTTGAGAAGAGTCTTTCATTACCAGAACGCCTCAAGATCCGATCTTG 359
Query 358 GGTCTAATCCTTTCAATTCTAGCACTTGGATGATGTCTGAGCTCATTGCTCTACTTGTTC 417
| | |||||||||||||||| |||||||||||| || |||||||| ||| ||||||| |
Sbjct 360 GCACCAATCCTTTCAATTCTATCACTTGGATGATTTCAGAGCTCATCGCTTTACTTGTAC 419
Query 418 AGCTCACTGTGATAACATTCACTCTAGCTATCTCCAAAGAA-GAGAGACCAATTTGGCCA 476
|| ||||||| ||||||| ||| |||||| | ||| ||||| ||||| || |||||||
Sbjct 420 AGATCACTGTCATAACATCCACACTAGCTTTGTCC-AAGAACGAGAGGCCTGTTTGGCC- 477
Query 477 G-TGAGGCTATGGATCACAGGATACGATGTGGGATGTCTTTTGAATCTCATGCTGTTATA 535
| |||||||||||||||| || ||| | || |||||||| | ||||| ||||| |||||
Sbjct 478 GATGAGGCTATGGATCACCGGCTACAACGTCGGATGTCTGCTCAATCTTATGCTATTATA 537
Query 536 TGGTCGGTATCGTCAACTAGACAT--TAACCAAGGAAATGGGTTTGTCCTT-GGCGATGT 592
||| |||||||||| | | |||| || ||||||||||| ||| ||| |||||| |
Sbjct 538 CGGTAGGTATCGTCAGC-A-ACATACTAGCCAAGGAAATGCATTT-AGCTTCGGCGATAT 594
Query 593 TGAGCAGCAACAGAGAGGCAGAGAAGA-A--ACTAGGTCCTCTCACTTGATGAACAAATG 649
||||| |||||||||| |||||||||| | || |||| ||| || |||||||||| |||
Sbjct 595 TGAGCTGCAACAGAGAAGCAGAGAAGAGACCACCAGGTGCTCGCATTTGATGAACAGATG 654
Query 650 CAGAACGTCGCTAGAGCTTTTCTTTGCGATTTGGTTTGTGATTGGAAATGTTTGGGTGTT 709
||| || ||||| ||||| ||||||||||| ||||||||||| || ||||| ||||| ||
Sbjct 655 CAGGACATCGCTGGAGCTATTCTTTGCGATATGGTTTGTGATAGGTAATGTATGGGTTTT 714
Query 710 CGATTCTAGGTTTGGTTCTTTCCACCATGCTCCCAA-GCTTCACGTTCTCTGCGTCTCTC 768
|||||| |||| |||||||||||| ||||| |||| ||||| || |||||| |||| |
Sbjct 715 TGATTCTCGGTTCGGTTCTTTCCACTATGCT-CCAATCCTTCATGTCCTCTGCATCTCCC 773
Query 769 TTTTAGCTTGGAACGCTATCTGCTATTCCTTTCCC-TTTCTTCTCTTCCTCTTCCTCTGT 827
| | |||||||||||| | ||||| ||| ||||| ||||||||||||||| | ||||||
Sbjct 774 TGCTCGCTTGGAACGCTCTATGCTACTCC-TTCCCGTTTCTTCTCTTCCTCCTGCTCTGT 832
Query 828 TGCCTTGTTCCTCTCATAAGTAGCCTCCTTGGATATAACATGAACATGGGATCCTCAGAC 887
|| |||| |||||| | |||||| |||| || || ||||||||| | ||||| || ||
Sbjct 833 TGTGTTGTGCCTCTCCTTAGTAGCTTCCTCGGCTACAACATGAACGTTGGATCTTCGGAA 892
Query 888 AGAGCAGCATCAGATGACCAAATCTCTAGTCTCCCTAGCTGGAAATTCAAACGAATCGAC 947
| || ||| ||||||||||||||||| ||||||||||| ||||||| ||||| || |||
Sbjct 893 AAAGGAGCTTCAGATGACCAAATCTCCAGTCTCCCTAGTTGGAAATACAAACTCATTGAC 952
Query 948 GATAGTGCTTCTGATTCTGATTCAGATTCAGCTACTGTAACTGATGATCCAGAGTGTTGT 1007
|| | ||||| ||||||| || | ||| | | | ||||||| || ||||||
Sbjct 953 GA-A--GCTTCAGATTCTG-CTC--A---AGC-A----AGC-AATGATCCGGAATGTTGT 997
Query 1008 ATATGTTTGGCAAAGTATAAAGACAAAGAAGAAGTAAGGAAGCTTCCATGTTCACATAAG 1067
||||||||||||||||| ||||| ||||||||||| || |||||||| ||||| |||| |
Sbjct 998 ATATGTTTGGCAAAGTACAAAGAGAAAGAAGAAGTGAGAAAGCTTCCCTGTTCGCATAGG 1057
Query 1068 TTTCA-CTCAAAGTGTGTAGATCAATGGCTTCGTATCATCTCTTGTTGTCCTCTCTGCAA 1126
||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1058 TTTCACCTCAAA-TGTGTAGATCAATGGCTTCGTATCATCTCGTGTTGTCCTCTCTGCAA 1116
Query 1127 ACAAGATCTTCC 1138
|||| |||||||
Sbjct 1117 ACAAAATCTTCC 1128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51580306701
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5