BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G56100.1 Length=637 Score E Sequences producing significant alignments: (Bits) Value Ahg950264 jgi|Araly1|950264|scaffold_802151.1 641 0.0 Ahg950267 jgi|Araly1|950267|scaffold_802154.1 634 0.0 Ahg925695 jgi|Araly1|925695|scaffold_201256.1 623 5e-178 > Ahg950264 jgi|Araly1|950264|scaffold_802151.1 Length=479 Score = 641 bits (347), Expect = 0.0 Identities = 403/430 (94%), Gaps = 3/430 (1%) Strand=Plus/Plus Query 1 ACTACTATGGAGAATCCTGGAGGAAGGAGAAGAAGAGACATAGCCATAACCGATGGAGAA 60 |||| ||||||||||| |||||| | ||||||||||||||||||||||||||||||||| Sbjct 21 ACTAGTATGGAGAATCATGGAGG-A--AGAAGAAGAGACATAGCCATAACCGATGGAGAA 77 Query 61 AGAACGACCGGTTCTTCGGTTGTGGCTGCAACCGTAGCAGCTGTTGCAGTGGTAGGACCG 120 || | ||| ||||||||||||||||||||||||||||||||||| |||||||| || ||| Sbjct 78 AGGAGGACTGGTTCTTCGGTTGTGGCTGCAACCGTAGCAGCTGTAGCAGTGGTCGGGCCG 137 Query 121 CTTTTTGGTCTGATGAGTTTCAGCTTTGTGGCGACGGTGACTCTGTTTCTGATCGCTTCT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 138 CTTTTTGGTCTGATGAGTTTCAGCTTTGTGGCGACGGTGACTCTGTTTCTGATCGCTTCT 197 Query 181 CCATTGCTGCTGATATTTGCTCCAGCTTTTATGGTAACGGTAGCGGTTCTTGTGTCGGCT 240 ||||||||||||| ||||||||||| ||||||||| | |||||||||||||||| ||||| Sbjct 198 CCATTGCTGCTGACATTTGCTCCAGTTTTTATGGTGATGGTAGCGGTTCTTGTGGCGGCT 257 Query 241 ATGGTTGGTGTTGGGGTAGCTGCAGCCATGTGGATGATGGGAATAGCCGCTTTGGTATGT 300 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 258 ATGGTTGGTGTTGGGGTAGCTGCAGCCATGTGGATGATGGGAATAGCTGCTTTGGTATGT 317 Query 301 TGTGGCCGAGAGATTGGTATTGAAACCGGACTGGCTGGGAGGATGGTTGAGTCGGTGGTG 360 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 318 TGTGGCCGAGAGATTGGTATTGAAACCGGAGTGGCTGGGAGGATGGTTGAGTCGGTTGTG 377 Query 361 AGAGAATTAGGTTACGGTCGGAGTCGTTACTTGCGAGACAAATCAGAGGATAGTTATTCA 420 |||||||||||||| ||||||||||||||||| ||| ||||||||||| || | ||||| Sbjct 378 AGAGAATTAGGTTATGGTCGGAGTCGTTACTTACGAAACAAATCAGAGTATGGCTATTCT 437 Query 421 ACTTCTTCTC 430 ||||||||| Sbjct 438 TCTTCTTCTC 447 > Ahg950267 jgi|Araly1|950267|scaffold_802154.1 Length=476 Score = 634 bits (343), Expect = 0.0 Identities = 402/430 (93%), Gaps = 6/430 (1%) Strand=Plus/Plus Query 1 ACTACTATGGAGAATCCTGGAGGAAGGAGAAGAAGAGACATAGCCATAACCGATGGAGAA 60 |||| ||||||||||| | || | | |||||||||||||||||||||||||||||||| Sbjct 21 ACTAGTATGGAGAATCAT---GG-A-G-GAAGAAGAGACATAGCCATAACCGATGGAGAA 74 Query 61 AGAACGACCGGTTCTTCGGTTGTGGCTGCAACCGTAGCAGCTGTTGCAGTGGTAGGACCG 120 || | ||| ||||||||||||||||||||||||||||||||||| |||||||| || ||| Sbjct 75 AGGAGGACTGGTTCTTCGGTTGTGGCTGCAACCGTAGCAGCTGTAGCAGTGGTCGGGCCG 134 Query 121 CTTTTTGGTCTGATGAGTTTCAGCTTTGTGGCGACGGTGACTCTGTTTCTGATCGCTTCT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 135 CTTTTTGGTCTGATGAGTTTCAGCTTTGTGGCGACGGTGACTCTGTTTCTGATCGCTTCT 194 Query 181 CCATTGCTGCTGATATTTGCTCCAGCTTTTATGGTAACGGTAGCGGTTCTTGTGTCGGCT 240 ||||||||||||| ||||||||||| ||||||||| | |||||||||||||||| ||||| Sbjct 195 CCATTGCTGCTGACATTTGCTCCAGTTTTTATGGTGATGGTAGCGGTTCTTGTGGCGGCT 254 Query 241 ATGGTTGGTGTTGGGGTAGCTGCAGCCATGTGGATGATGGGAATAGCCGCTTTGGTATGT 300 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 255 ATGGTTGGTGTTGGGGTAGCTGCAGCCATGTGGATGATGGGAATAGCTGCTTTGGTATGT 314 Query 301 TGTGGCCGAGAGATTGGTATTGAAACCGGACTGGCTGGGAGGATGGTTGAGTCGGTGGTG 360 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 315 TGTGGCCGAGAGATTGGTATTGAAACCGGAGTGGCTGGGAGGATGGTTGAGTCGGTTGTG 374 Query 361 AGAGAATTAGGTTACGGTCGGAGTCGTTACTTGCGAGACAAATCAGAGGATAGTTATTCA 420 |||||||||||||| ||||||||||||||||||||| ||||||||||| || ||||||| Sbjct 375 AGAGAATTAGGTTATGGTCGGAGTCGTTACTTGCGAAACAAATCAGAGTATGGTTATTCT 434 Query 421 ACTTCTTCTC 430 ||||||||| Sbjct 435 TCTTCTTCTC 444 > Ahg925695 jgi|Araly1|925695|scaffold_201256.1 Length=446 Score = 623 bits (337), Expect = 5e-178 Identities = 393/420 (94%), Gaps = 4/420 (1%) Strand=Plus/Plus Query 7 ATGGAGAATCCTGGAGGAAGGAGAAGAAGAGACATAGCCATAACCGATGGAGAAAGAACG 66 |||||||||| |||||| | ||| ||||| ||||||||||||||||||||||||| | | Sbjct 1 ATGGAGAATCATGGAGG-A--AGATGAAGAAACATAGCCATAACCGATGGAGAAAGGAGG 57 Query 67 ACCGGTTCTTCGGTTGTGGCTGCAACCGTAGCAGCTGTTGCAGTGGTAGGACCGCTTTTT 126 || ||||||||| ||||||||||||||||| ||||||| |||||||| || ||||||||| Sbjct 58 ACTGGTTCTTCGATTGTGGCTGCAACCGTAACAGCTGTAGCAGTGGTCGGGCCGCTTTTT 117 Query 127 GGTCTGATGAGTTTCAGCTTTGTGGCGACGGTGACTCTGTTTCTGATCGCTTCTCCATTG 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 GGTCTGATGAGTTTCAGCTTTGTGGCGACGGTGACTCTGTTTCTGATCGCTTCTCCATTG 177 Query 187 CTGCTGATATTTGCTCCAGCTTTTATGGTAACGGTAGCGGTTCTTGTGTCGGCTATGGTT 246 ||||||||||||||||||| ||||||||| |||||||||||||||||| | || |||||| Sbjct 178 CTGCTGATATTTGCTCCAG-TTTTATGGTGACGGTAGCGGTTCTTGTGGCAGCAATGGTT 236 Query 247 GGTGTTGGGGTAGCTGCAGCCATGTGGATGATGGGAATAGCCGCTTTGGTATGTTGTGGC 306 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 237 GGTGTTGGGGTAGCTGCAGCCATGTGGATGATGGGAATAGCTGCTTTGGTATGTTGTGGC 296 Query 307 CGAGAGATTGGTATTGAAACCGGACTGGCTGGGAGGATGGTTGAGTCGGTGGTGAGAGAA 366 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 297 CGAGAGATTGGTATTGAAACCGGAGTGGCTGGGAGGATGGTTGAGTCGGTGGTGAGAGAG 356 Query 367 TTAGGTTACGGTCGGAGTCGTTACTTGCGAGACAAATCAGAGGATAGTTATTCAACTTCT 426 |||||||||||||||||||||||||||||| ||||||||||| || ||||||| ||||| Sbjct 357 TTAGGTTACGGTCGGAGTCGTTACTTGCGAAACAAATCAGAGTATGGTTATTCTTCTTCT 416 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23331225204 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5