BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G56160.1 Length=2191 Score E Sequences producing significant alignments: (Bits) Value Ahg917308 jgi|Araly1|917308|Al_scaffold_0008_2059 2401 0.0 > Ahg917308 jgi|Araly1|917308|Al_scaffold_0008_2059 Length=1728 Score = 2401 bits (1300), Expect = 0.0 Identities = 1590/1726 (92%), Gaps = 35/1726 (2%) Strand=Plus/Plus Query 248 ATGTCAGGTCGAGAACAAACAGGAGAGAAACTATCAGATTCTGAGTACATAGAAGAAGAG 307 ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1 ATGTCAGGTCGTGAACAAACAGGAGAGAAACTATCAGATTCTGAGTGCATAGAAGAAGAG 60 Query 308 CCACGGCGTTCTAGAATTGGGAATTTGAAGAAGAAGGCTTTTAGTTGTTCAACTAAACTT 367 ||||||||||||||||| ||||||||||||||||||||| ||| |||||||| ||||||| Sbjct 61 CCACGGCGTTCTAGAATCGGGAATTTGAAGAAGAAGGCTATTACTTGTTCAAGTAAACTT 120 Query 368 ACACATCCTTTGAAGATGAGAAAAGGCAAACGTAAAATCGATTTCCAGATTCCTTTGATT 427 || ||||||||| | | ||||||||||||||||||||||| || ||||||| ||| Sbjct 121 ACTCATCCTTTG-A-A-GAGAAAAGGCAAACGTAAAATCG------AGCTTCCTTTTATT 171 Query 428 GAAGATGTTAGAGATGAGAAAGAGGAGAAGCTTGTTTCTAAATTGCGTCAACAACTTCTT 487 ||||||||||| ||||||||||| |||||| |||||||||||||||||||| |||||||| Sbjct 172 GAAGATGTTAGGGATGAGAAAGATGAGAAGATTGTTTCTAAATTGCGTCAAGAACTTCTT 231 Query 488 CAGAAAGATTTGTTGCCTCCAGTACATGATGATTATCATATGTTGTTGAGGTTTCTGAAA 547 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 232 AAGAAAGATTTGTTGCCTCCAACGCATGATGATTATCATATGTTGTTGAGGTTTCTGAAA 291 Query 548 ACAATGGAATTCAAAATCGAGAAAACTGTCACGGCATGGGAGGAAATGCTTAAATGGAGG 607 |||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||| Sbjct 292 ACAATGGAATTCAAAATCGAGAAAACTGTCACTGCATGGGAAGATATGCTCAAATGGAGG 351 Query 608 AAAGAATTTGGAACCGATCGCATTATACAGGATTTCAATTTCAAAGAGTTGGATGAAGTG 667 |||||||||| ||| || ||||||||||||||||| ||||||||||||||||| ||||| Sbjct 352 AAAGAATTTGCAACTGACCGCATTATACAGGATTTTAATTTCAAAGAGTTGGACCAAGTG 411 Query 668 ACAAGGCACTATCCTCAAGGGTATCATGGAGTTGATAAAGATGGGAGACCTATTTATATC 727 ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 412 ACACGGCACTATCCTCAAGGGTATCATGGAGTTGATAAGGATGGGAGACCTATTTATATC 471 Query 728 GAGAGACTTGGAAAAGCTCATCCTGGTAAACTTATGGAGGTTACTACTATAGAGCGATAC 787 || |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 472 GAAAGACTTGGAAAAGCTCATCCTGGTAAGCTTATGGAGGTTACTACCATAGAGCGATAT 531 Query 788 TTGAAGTACCATGTTCAAGAATTCGAGAGGACACTTCAAGAGAAGCTACCTGCGTGTTCA 847 |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 532 TTGAAGTACCATGTACAAGAATTTGAGAGGACACTTCAAGAGAAGCTCCCTGCGTGTTCA 591 Query 848 GTTGCAGCTAAGAGACGAGTTACTACAACTACTACAATACTAGATGTTGAAGGCCTGGGT 907 |||||||||||| |||||||||||||||| ||||| || ||||||||||||||| ||||| Sbjct 592 GTTGCAGCTAAGCGACGAGTTACTACAACAACTACGATTCTAGATGTTGAAGGCTTGGGT 651 Query 908 ATGAAGAACTTTACTCCTACCGCTGCTAATCTCCTGGCCACCATTGCTAAAGTTGATTGC 967 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 652 ATGAAGAACTTTACTCCTACAGCTGCTAATCTCCTGGCCACCATTGCTAAAGTAGATTGC 711 Query 968 AATTATTACCCTGAGACTTTGCACCGAATGTTCATTGTCAATGCAGGGATTGGATTCAGG 1027 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 712 AATTATTACCCTGAGACTTTGCACCGAATGTTCATTGTCAATGCAGGGATTGGATTCAGG 771 Query 1028 AGTTTTCTTTGGCCTGCCGCACAGAAGCTTCTTGATCCGATGACTATTGCAAAGATACAA 1087 | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 772 AATTTTCTTTGGCCTGCCGCACAGAAGCTTGTTGATCCGATGACTATTGCAAAGATACAA 831 Query 1088 GTTTTGGAGCCAAGGTCCTTGTCAAAGTTACTTGAAGCAATTGATTCCAGTCAACTTCCA 1147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 832 GTTTTGGAGCCAAGGTCCTTGTCAAAGTTACTTGAAGCAATTGATTCCAGTCAACTTCCA 891 Query 1148 GAATTCTTGGGAGGCTTATGCAAATGTCCTAACGAGGGAGGGTGCTTGAGGTCTAACAAA 1207 || |||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 892 GAGTTCTTGGGAGGCTTATGCAAATGTCCTAACGAGGGAGGGTGCTTGAGGTCAAATAAA 951 Query 1208 GGACCCTGGAATGATCCTGAAATAGTTGAGCTCGTTCATCACATGGAAGTAAATAATGTA 1267 |||||||||||||||||||||||| ||| |||||||||||||||| ||| |||| Sbjct 952 GGACCCTGGAATGATCCTGAAATA------CTCATTCATCACATGGAAGTTAATCCTGTA 1005 Query 1268 CCGCAAA-CAACAACAGCTCCTCTTCATGTAAGAGATTATGATTCTACCACTTGCACGAT 1326 ||||||| || ||||||||||||||| | |||| |||||||||||| ||||||||||||| Sbjct 1006 CCGCAAATCA-CAACAGCTCCTCTTCGTATAAGTGATTATGATTCTTCCACTTGCACGAT 1064 Query 1327 CTCGCCTAAAGAAA-------C-----TTTGAAAGAAGAGCCAGAACCTGAAGAATATTA 1374 | |||||||||||| | ||| ||||||||||||||| ||||||||||||| Sbjct 1065 CCCGCCTAAAGAAAGGTATAACAAAACTTTTAAAGAAGAGCCAGAATCTGAAGAATATTA 1124 Query 1375 CTCTTCCACTGGGTCCAGATCTTCAATGCACACTTGTATAGTTCCTCCACTCTCTGATAA 1434 ||||||||||||||| |||||||||||| ||| |||| |||||||| ||||||||||||| Sbjct 1125 CTCTTCCACTGGGTCAAGATCTTCAATGTACAATTGTTTAGTTCCTTCACTCTCTGATAA 1184 Query 1435 GGCTAGTACATCAGACGGTGATAAATTCATTACTACCGTGGAATCTATAGAATCGGCTCA 1494 ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 1185 GGCTAGTACATCAGACGGTGATAAAATCATTACTACCGTGGAATCTATAGAACCGGCTCA 1244 Query 1495 ATCCCA-ATTACTTGACGCGGATACTGAAAACACTTTCGCAAATACATCTGTAAGAGAAG 1553 |||||| || |||| || |||| || |||||| |||| ||||||||| | ||||||||| Sbjct 1245 ATCCCATAT-ACTTAACACGGACACCGAAAACTCTTTTGCAAATACAACCATAAGAGAAG 1303 Query 1554 GTGGTCAGATTTTACGGTTTGGTGCTCTTAGAGAGAAAATCAACAGCGAGAACATCTTTC 1613 |||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct 1304 GTGGTCAGATGTTACGGTTTGGTGCACTTAGAGAGAAAATCAACGGCGAGAACATCTTTC 1363 Query 1614 ACTTGGTGAAAATACTACTAGTTTTTCCACTGAAGCTATTTGTTCT-CTTTGGTTTCCTA 1672 |||||||||||| |||||||| |||||||||||||||||||| || | ||||||||||| Sbjct 1364 ACTTGGTGAAAACACTACTAGCCTTTCCACTGAAGCTATTTGT-CTTCGTTGGTTTCCTA 1422 Query 1673 TTACCTGGATACTGGCAAAGACAGAACACA-GTCGTTGTCCCAGATTCGTCGACAAACAA 1731 || ||||||||||||||||||||||||| | |||||||||||||| || || | |||||| Sbjct 1423 TTGCCTGGATACTGGCAAAGACAGAACA-ATGTCGTTGTCCCAGAATCATCAATAAACAA 1481 Query 1732 CAAGGTTCTTGAGTGTTTCGATCGTCTTAAGAAGATGGAGAAAGAATTCACAGAGATCAG 1791 | ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 1482 CCAGGTTCTCGAGTGTTTAGATCGTCTTAAGAAGATGGAGAAAGAATTCACAGAGATTAG 1541 Query 1792 TAGAAAACAAGTAAAAATCCCAGAAGCAAATGAGAAGCTATTAGCAGAATCTCTGGAGAG 1851 |||||||| |||||||||||||||||||||||||||||| ||| | |||||||| ||||| Sbjct 1542 TAGAAAACCAGTAAAAATCCCAGAAGCAAATGAGAAGCTCTTAACGGAATCTCTCGAGAG 1601 Query 1852 GATCAAGTCTCTAGAACTCGATCTCGACAAAACGAAATCAGTATTACATATAACATTAAC 1911 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1602 GATCAAGTCTCTAGAACTCGATCTCGACAAAACCAAATCAGTATTACATATAACATTAAC 1661 Query 1912 AAAACAACTTCAGATTACAGAACAGCTTGAATCTCAAGACGAAGAA 1957 ||||||||||||||| |||||||||||||||||||| || ||||| Sbjct 1662 AAAACAACTTCAGATCACAGAACAGCTTGAATCTCATTACCAAGAA 1707 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82465380425 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5