BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56180.1
Length=1675
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495706 jgi|Araly1|495706|fgenesh2_kg.8__1522__AT5G56180.1 2442 0.0
> Ahg495706 jgi|Araly1|495706|fgenesh2_kg.8__1522__AT5G56180.1
Length=1557
Score = 2442 bits (1322), Expect = 0.0
Identities = 1481/1558 (95%), Gaps = 9/1558 (1%)
Strand=Plus/Plus
Query 46 ATGATCCTGAAGAAAGTATGGGGATCGGTGTGGAACCGATCGAATAGTGGCAAGGATTTG 105
||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATTCTTAGGAAAGTATGGGGATCGGTGTGGAACCGATCGAATAGTGGCAAGGATTTG 60
Query 106 GTGAATCATCAGAGAGCGAT--C-GATG-T--TCCTCCTCTGTTATTGTCTTCTTCATCG 159
|||| ||||||||||||||| | ||| | |||||||||||| ||||||||||| |||
Sbjct 61 GTGACTCATCAGAGAGCGATGACTCATGTTGCTCCTCCTCTGTTGTTGTCTTCTTCTTCG 120
Query 160 TCTCTTGGTGCGTTTGATCAGCTACCGATGGATATTCTAGTCCAGATACTGATGATGATG 219
|||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||
Sbjct 121 TCTCTTGGTGCGTTTGATCAGCTACCGATGGATATTGTAGTTCAGATATTGATGATGATG 180
Query 220 GAGCCAAAAGATGCTGTGAAATTGGGCTTAACGTGCAAAGCCTGGAAATGCGTAGCTAGT 279
||||||| ||||||||||||||| |||||||| ||||||||||||||||| |||||| ||
Sbjct 181 GAGCCAAGAGATGCTGTGAAATTAGGCTTAACTTGCAAAGCCTGGAAATGTGTAGCTGGT 240
Query 280 GGTAATCGTCTCTGGATATTTTATCTCCAGTGTTCTCAAGAGCCATGGGACTCCATTTTC 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTAATCGTCTCTGGATATTTTATCTCCAGTGTTCTCAAGAGCCATGGGACTCCATTTTC 300
Query 340 TTCGCTGAAACTAGTTTGCGTTCTGGTTATCCTCTCCGAATGATTTCTAGTCAATCAGGA 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCGCTGAAACTAGTTTGCGTTCTGGTTATCCTCTCCGAATGATTTCTAGTCAATCAGGA 360
Query 400 GAGTTGTCGTTTATGCACATTTATAGTCAGAGGGCACAAGTTCCTGGTTCTATCATTATT 459
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GACTTGTCGTTTATGCACATTTATAGTCAGAGGGCACAAGTTCCTGGTTCTATCATTATC 420
Query 460 GATGGTGGTTCTGGATATTGTAAGTTTGGTTGGAGCAAGTATGCGTCTCCTTCTGGACGT 519
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 421 GATGGTGGTTCTGGATATTGTAAGTTTGGTTGGAGCAAGTATGCTTCACCTTCTGGACGT 480
Query 520 TCTGCTACTTTTTTGGAATTTGGTAACATTGAGTCACCGATTTATGCTAGACTTCAACAG 579
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 481 TCTGCTACTTTTTTGGAATTTGGTAACATTGAGTCGCCCATATATGCTAGACTTCAACAG 540
Query 580 TTCTTTGCAACCATTTTCACCAGGATGCAGGTAAAGCCCTCTATGCAGCCAATAGTGGTA 639
||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 TTCTTCGCTACCATTTTCACCAGGATGCAGGTGAAGCCCTCTATGCAGCCAATAGTGGTA 600
Query 640 TCACTACCTCTCTGCCATTTTGATGATACTGAATCAGCCAAGGCATCAAGGCGGCAACTT 699
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 601 TCACTACCTCTCTGCCATTTTGATGATACTGAATCGGCCAGGGCATCAAGGCGGCAACTC 660
Query 700 AAGACTGCTATTTTCAATGTCTTGTTTGACATGAACGTCCCTGCAGTGTGTGCAGTTAAT 759
||||||||||| |||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 661 AAGACTGCTATCCTCAATGTCTTATTTGACATGAATGTTCCTGCAGTGTGTGCAGTTAAT 720
Query 760 CAGGCTGTGTTAGCTCTATATGCAGCACGGCGGACATCTGGAATTGTTGTCAACATTGGT 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CAGGCTGTGTTAGCTCTATATGCAGCACGGCGGACATCTGGAATTGTTGTCAACATTGGT 780
Query 820 TTCCAAGTCATCACCATTCTTCCGATTTTACATGGTAAGGTGATGCGCCAGGTAGGTGTA 879
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 781 TTCCAAGTCATCACCATTCTTCCAATTTTGCATGGTAAGGTGATGCGCCAGGTAGGTGTA 840
Query 880 GAAGTCATTGGTTTTGGAGCATTGAAACTCACGGGCTTCCTTAAGGAGAAGATGCAAGAA 939
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GAAGTCATTAGTTTTGGAGCATTGAAACTCACGGGCTTCCTTAAGGAGAAGATGCAAGAG 900
Query 940 AACAACATTTCCTTTCAATCACTCTACACTGTTCGTACTCTTAAAGAGAAACTGTGTTAT 999
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AACAACATGTCCTTTCAATCACTCTACACTGTTCGTACTCTTAAAGAGAAACTGTGTTAT 960
Query 1000 GTGGCTCTTGATTATAAAGCTGAACTTTCAAAAGACACACAAGCTTCAGTGGAAGTTTCA 1059
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 961 GTGGCTCTTGATTATAAAGCTGAACTTTCAAAAGACACACAAGCTTCAGTGGAAGTGTCA 1020
Query 1060 GGTGAAGGATGGTTTACTTTATCAAAAGAGCGTTTCCAAACAGGGGAGATATTATTCCAA 1119
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1021 GGTGAAGGATGGTTTACTTTGTCAAAAGAGCGTTTCCAGACAGGGGAGATATTATTCCAA 1080
Query 1120 CCACGTCTCGCTGGAATGCGTGCAATGAGTCTGCACCAGGCCGTCTCGCTCTGTATGGAC 1179
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1081 CCACGTCTCGCTGGAATGCGTGCAATGAGTCTGCACCAGGCAGTCTCGCTCTGTATGGAC 1140
Query 1180 CACTGTGATGCAGCAGGACTTACAGGTGACGATAGTTGGTTCAAGACTGTAGTACTAACT 1239
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1141 CACTGTGATGCAGCGGGACTTACAGGTGACGATAGTTGGTTCAAGACTGTAGTCCTAACT 1200
Query 1240 GGGGGAAGCGCGTGTTTGCCTGGACTCTCAGAGAGGCTAGAGAGAGAACTGCAAGATCAC 1299
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1201 GGGGGAAGCGCGTGTTTGCCTGGACTCTCAGAGAGGCTAGAGAGAGAACTGCGTGAACAC 1260
Query 1300 CTTCCTTCATCTATAAGTAACGGAATCAGAGTAATACCTCCTCCTTACGGCGTGGACACA 1359
||||| ||||||||||| || ||| |||||||||| |||||||| | |||||||||||||
Sbjct 1261 CTTCCGTCATCTATAAGCAATGGAGTCAGAGTAATCCCTCCTCCGTGCGGCGTGGACACA 1320
Query 1360 TCATGGCATGGGGCAAAGCTTATTAGTAATTTGAGCATCTTTCCTGGTCCTTGGTGTATC 1419
||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||
Sbjct 1321 TCATGGCATGGGGCAAAGCTTATCAGTAACTTGAGCACCTTTCCTGGTCCTTGGTGTATC 1380
Query 1420 ACAAGGAAGCAGTTCCGTCGCAAGTCAAGACTCATGTGGTGAATCTTTCCTACCATCGC- 1478
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1381 ACAAGGAAGCAGTTCCGTCGTAAGTCGAGACTCATGTGGTGAATCTTTCCTACCATCGCG 1440
Query 1479 ACAGACCGAGTGAGAGGCAGGTTA-CAGCTGTTATAAGGTACTTTGCAAGTCTTTAGATA 1537
| |||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1441 A-AGACAGAGTGAGAGGCAGGTTGTCAGCTGTTCTAAGGTACTTTGCAAGTCTTTAGATA 1499
Query 1538 AGTATGTATATGTATAGAGTCATACTTGATTGTACTCAAAAGCCATAAAGAACAAACA 1595
|||| |||||||||||| ||||||||||||| ||||||||||||| ||| | ||||||
Sbjct 1500 AGTAAGTATATGTATAGTGTCATACTTGATTATACTCAAAAGCCACAAACAGCAAACA 1557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62810814005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5