BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56260.1
Length=1013
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495716 jgi|Araly1|495716|fgenesh2_kg.8__1532__AT5G56260.1 1328 0.0
> Ahg495716 jgi|Araly1|495716|fgenesh2_kg.8__1532__AT5G56260.1
Length=907
Score = 1328 bits (719), Expect = 0.0
Identities = 858/923 (93%), Gaps = 17/923 (2%)
Strand=Plus/Plus
Query 2 GTCAACGATCCGACCCGAGAAAAGCGGGTCGGATTGAAAATACCCGCACCGTCGGGTTTA 61
||||| || ||||||||||||||||| |||||||||||||||||||||||| || |||||
Sbjct 1 GTCAATGACCCGACCCGAGAAAAGCGTGTCGGATTGAAAATACCCGCACCGACGAGTTTA 60
Query 62 CGATAGGAGAGACCAAGTGGCTCTCATGGCACAAGCTTCTATGAGGATTTTTCAGTAAAT 121
|||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 61 CGATAGGAGA-ACCAAGTGCCTCTAATGGCACAAGCTTCTATGAGGATTTTTCAGTAAAT 119
Query 122 GGATAGCCTGACACGAGAAAGCTGACCTCACTCGCTACTTGGGTTGATTGTGTAAATATA 181
| | ||||||| || ||||||||||||||||||||||||| | | | | || |||||
Sbjct 120 -G---G-CTGACACTAGGAAGCTGACCTCACTCGCTACTTGGGGTCAATATATATATATA 174
Query 182 TGAAAGTATCGTCGTTGAGAAATTGGGACTCTGATCTGTTGCAGAAAGCCGAAAGCTTTG 241
|| ||||||| |||||||||||||||||||||| ||||||| |||||||||||
Sbjct 175 TGTAAGTATCTTCGTTGAGAAATTGGGACTCTGTTCTGTTGTGGAAAGCCGAAA------ 228
Query 242 GTCTTTGGAGCTCTAACCTCTGCCTCTGAACACACACAGAATCTCCCATGGCTGCATTTG 301
| |||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct 229 G-CTTTGGAGCTTTAACCTCTTTCTCTGTACACATACAGAATCTCCCATGGCTGCATTTG 287
Query 302 CAACGGCAGAAGCGTGTGACAGCAACGCAGAACTAATATCAAATGGAGACTTACGCGCTC 361
|||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 288 CAACCGCAGAAGCGTGTGACAGCAACGCAGAACTAATATCAAACGGAGACTTATGCGCTC 347
Query 362 TTCACCCAATCTTCAAGATCTATGGCCAAAGAAGATGCTTCTCAGGACCAATCGTGACTC 421
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 TCCACCCAATCTTCAAGATCTATGGCCAAAGAAGATGCTTCTCAGGACCAATCGTGACTC 407
Query 422 TCAAGGTCTTTGAAGACAATGTCCTCGTCAGAAACCAACTAGAAACGAAAGGAGAAGGCG 481
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 408 TCAAGGTCTTTGAAGACAATGTCCTCGTCAGAAACCAACTAGAGACAAAAGGAGAAGGCG 467
Query 482 GAGTCTTAGTTATAGACGGTGGTGGAAGCATGAGATGCGCGCTTGTTGGAGGAAACCTCG 541
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 468 GAGTCTTAGTTATAGACGGTGGTGGAAGCATGAGATGTGCTCTTGTTGGAGGAAACCTCG 527
Query 542 GACAGTTAGCTCAGAACAACGGGTGGTCGGGGATTGTTGTGAATGGATGCGTTAGAGATG 601
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 528 GACAGTTAGCTCAGAACAACGGGTGGTCGGGGATTGTTGTGAATGGATGTGTTAGAGATG 587
Query 602 TGGATGAGATCAATGACTGCGATGTTGGGGTCAGGGCATTGGGATCTAACCCGTTGAAAT 661
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 588 TGGATGAGATCAATGACTGCGATGTTGGGGTCAGGGCCTTGGGATCTAACCCATTGAAGT 647
Query 662 CTACTAAGAAAGGTCATGGTGAGAAGAATGTGCCGGTTCATATTGGAGGAACTTTGATTA 721
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 648 CTACTAAGAAAGGTCATGGTGAGAAGAATGTACCTGTTCATATTGGAGGAACTTTGATTA 707
Query 722 GAGATGGAGAGTGGCTATATGCTGATAGTGATGGTATCTTGATCTCCAAGACCGAACTCT 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 GAGATGGAGAGTGGCTATATGCTGATAGTGATGGTATCTTGATCTCCAAGACCGAACTCT 767
Query 782 CTGTTTGAGTCAGAACGTTTCCGTGATAGTGCTAAGAGACTACAGCTTCTTGGAGCAAGG 841
||||||||||||||| |||||| |||||||||||||||||| |||||||||| |||||||
Sbjct 768 CTGTTTGAGTCAGAAGGTTTCCTTGATAGTGCTAAGAGACTGCAGCTTCTTGAAGCAAGG 827
Query 842 TGGTTTATTCGAATTCTTAAG-AATCTGTTTAATACTCCAAATAATCATTTTTATTACAA 900
||||||||| ||||||||| | ||||||||||||||||||||||||||||| | |||
Sbjct 828 TGGTTTATTTGAATTCTTA-GTAATCTGTTTAATACTCCAAATAATCATTTCG-TG-CAA 884
Query 901 TATACTTACGTTTTATGAAATTA 923
|||||||||||||| ||||||||
Sbjct 885 TATACTTACGTTTTGTGAAATTA 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37665441996
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5