BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56320.1
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495722 jgi|Araly1|495722|fgenesh2_kg.8__1538__AT5G56320.1 1279 0.0
Ahg939949 jgi|Araly1|939949|scaffold_600493.1 178 9e-44
> Ahg495722 jgi|Araly1|495722|fgenesh2_kg.8__1538__AT5G56320.1
Length=1030
Score = 1279 bits (692), Expect = 0.0
Identities = 786/831 (95%), Gaps = 7/831 (1%)
Strand=Plus/Plus
Query 60 CtttttttttCTTTCTCCAAGCCATTG-AATAAAAAGGCAGAGAAAATGGAGTTTTTTGG 118
||||||||||||||||||| ||||||| || ||||||||||||||||||||| |||| ||
Sbjct 23 CTTTTTTTTTCTTTCTCCAGGCCATTGTAAAAAAAAGGCAGAGAAAATGGAGATTTTCGG 82
Query 119 TAAAA-TGATAATTTCATTGAGTCTTATGATGATGATAATGTGGAAGAGCGTGGATGGTT 177
|||| ||||||| ||||||||||||||||||||| | ||||||||||| ||||||||||
Sbjct 83 -AAAAGTGATAATGTCATTGAGTCTTATGATGATGTTGATGTGGAAGAGTGTGGATGGTT 141
Query 178 ACAGTAGTGGTTGGGTCAATGCTCGAGCCACATTCTATGGAGGAGCTGATGCTTCTGGCA 237
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 142 ACAGTAGTGGTTGGGTCAATGCTCGAGCTACATTCTATGGAGGTGCTGATGCTTCTGGCA 201
Query 238 CCATGGGCGGCGCGTGTGGTTACGGAAACTTATACAGTCAAGGATACGGCACTAACACGG 297
||||||||||||||||||||||||| ||||||||||||||||| ||||| || |||||||
Sbjct 202 CCATGGGCGGCGCGTGTGGTTACGGGAACTTATACAGTCAAGGCTACGGAACGAACACGG 261
Query 298 CGGCTCTAAGCACGGCTCTATTCAACGGCGGCCAAAGCTGTGGTGCTTGTTTTCAGATAA 357
||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||
Sbjct 262 CGGCTCTAAGCACGGCTCTATTCAACGGCGGCCAAGGCTGCGGCGCTTGTTTTCAGATAA 321
Query 358 AATGCGTAGACGACCCAAAATGGTGTATCGGTGGAACAATCACCGTCACCGGAACAAACT 417
|||||||| ||||||||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 322 AATGCGTAAACGACCCAAAATGGTGTCTCCGAGGAACAATCACCGTCACCGGAACAAACT 381
Query 418 TTTGTCCACCCAACTTTGCTCAAGCCAACAACGCCGGAGGTTGGTGTAATCCTCCTCAAC 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 TTTGTCCACCCAACTTTGCTCAAGCCAACAACGCCGGAGGTTGGTGTAATCCTCCTCAAC 441
Query 478 ACCACTTCGATTTAGCTCAGCCCATCTTCCTCCGTATTGCTCAATACAAAGCCGGCGTCG 537
| |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 442 ATCACTTCGATTTAGCTCAGCCCATCTTCCTCCGCATCGCTCAATACAAAGCCGGTGTCG 501
Query 538 TCCCTGTCCAATACCGGAGAGTGGCTTGCCGGAGAAAAGGAGGAATAAGATTCACGATCA 597
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 TCCCCGTCCAATACCGGAGAGTGGCTTGCCGGAGAAAAGGAGGAATAAGATTCACGATCA 561
Query 598 ACGGTCATTCATACTTCAACCTCGTACTTATAACCAACGTCGCCGGCGCCGGAGATGTTA 657
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 562 ACGGTCACTCATACTTCAACCTCGTACTCATAACCAACGTCGCCGGCGCCGGAGATGTTG 621
Query 658 TCTCCGTCTCCATTAAAGGAACCA-ATACACGTTGGCAAAGCATGTCAAGAAACTGGGGA 716
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||
Sbjct 622 TCTCCGTCTCCATTAAAGGAACCAGA-ACAGGTTGGCAAAGCATGTCAAGAAACTGGGGA 680
Query 717 CAGAATTGGCAAAGCAA-TGCAAAACTTGATGGTCAAGCTTTGTCCTTTAAAGTAACAAC 775
||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct 681 CAGAATTGGCAAAGCAACT-CAAATCTTGATGGTCAAGCTTTGTCCTTTAAAGTAACAAC 739
Query 776 TAGTGATGGCCGTACAGTTATATCTAACAATGCTACACCACGTAACTGGAGCTTCGGACA 835
||||||||||||||||||| | |||||||||||||| || | |||||||||||| |||||
Sbjct 740 TAGTGATGGCCGTACAGTTGTCTCTAACAATGCTACTCCGCTTAACTGGAGCTTTGGACA 799
Query 836 GACTTATACCGGAAAACAGTTCCGGGCTCAGAGGTGATGATGACGTGGACT 886
|||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 800 GACTTATACCGGAAAACAGTTCGGGGCTCAGAGGTGATGATGACGTGGACT 850
Score = 213 bits (115), Expect = 2e-54
Identities = 168/190 (88%), Gaps = 17/190 (9%)
Strand=Plus/Plus
Query 912 ACTTATTACTGATTTTGGAGTTTTCTAGAGTTTGCATAGTTTG-AAAAAAGTTTTCA-G- 968
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
Sbjct 848 ACTTATTACTGATTTTGGAGTTTTCTAGAGTTTGCATAGTTTGAAAAAAAG-TTTCAGGA 906
Query 969 G---A----ATTAACCCTAATCAAAATAACCAATTTCTAAATGGCGGAAATCGAGGTTTT 1021
| | ||||||||||||||||||||||||||||| |||||| | ||||||||
Sbjct 907 GTTTATCTGATTAACCCTAATCAAAATAACCAATTTCTGAATGGC-G-----GAGGTTTT 960
Query 1022 TTCTCACTGGCAGCTTTTGTAATTCGCCGGTGAGACTGAGGTGTTTTCACCCGCCGCCTG 1081
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 961 TTATCACCGGCAGCTTTTGTAATTCGCCGGTGAGACTGAGGTGTTTTCACCCGCCGCTTG 1020
Query 1082 AGTGATTGAG 1091
||| ||||||
Sbjct 1021 AGTAATTGAG 1030
> Ahg939949 jgi|Araly1|939949|scaffold_600493.1
Length=804
Score = 178 bits (96), Expect = 9e-44
Identities = 401/544 (74%), Gaps = 37/544 (7%)
Strand=Plus/Plus
Query 210 TTCTATGGAGGAGCTGATGCTTCTGGCACCATGGGCGGCGCGTGTGGTTACGGAAACTTA 269
||||| || |||| |||||| || ||||| ||||| || || ||||| ||||| ||||||
Sbjct 131 TTCTACGGTGGAGATGATGCATCCGGCACAATGGGTGGTGCTTGTGGGTACGGTAACTTA 190
Query 270 TACAGTCAAGGATA-CGGC-ACTAACACGGCGGCTCTAAGCACGGCTCTATTCAACGGCG 327
|||| ||||| || ||| || || || |||||| | ||||||||| | ||||| | |
Sbjct 191 CACAGCCAAGGCTATGGGCTAC-AA-ACCGCGGCTTTGAGCACGGCTTTGTTCAATAGTG 248
Query 328 GCCA-AAGCTGTGGTGCTTGTTTTCAGATAAAATGCGTA-GACGACCCAAAATGGTGTAT 385
| || || ||||| || || ||| || || |||| | | || || || | ||||| ||
Sbjct 249 GGCAGAA-ATGTGGGGCCTGCTTTGAGCTACAATGTG-AGGATGATCCTGAGTGGTGCAT 306
Query 386 CGGTGGAACAATCACCGTCACCGGAACAAACTTTTGTCCACCCAACTTTG-CTCAAGCCA 444
| ||| | |||| |||| | | |||||||| ||||| || ||||||| || |||||
Sbjct 307 CCCTGGTTCCATCATCGTCTCAGCTACAAACTTCTGTCCTCCAAACTTTGCCT-TAGCCA 365
Query 445 ACAACGCCGGAGGTTGGTGTAATCCTCCTCAAC-ACCACTTCGATTTAGCTC-AGCCCAT 502
| | || |||||||| |||||||||| | | ||||| || || || | ||||
Sbjct 366 ATGATAATGGTGGTTGGTGCAATCCTCCTC-TCAAGCACTTTGACTTGGC-CGAGCCTGC 423
Query 503 CTTCCTCC-GTATTGCTCAATACAAAGCCGGCGTCGTCCCTGTC-CAATACCGGAGAGTG 560
|||||||| | || ||||| ||| || || |||| |||||| | || | || || |
Sbjct 424 CTTCCTCCAG-ATCGCTCAGTACCGGGCTGGAATCGTTCCTGTCGC-AT-TCAGA-AG-G 478
Query 561 GCTTGCC--G-GAGAAA--AGGAGGAATAAGATTCACGATCAACGGTCATTCATACTTCA 615
| || || | |||||| ||||| ||||| |||||||||||||| || | || |||
Sbjct 479 G-TT-CCATGTGAGAAAGGTGGAGGGATAAGGTTCACGATCAACGGGAATCCGTATTTCG 536
Query 616 ACCTCGTACTT-ATAACCAACGTCGCCGGCGCCGGAGATGTTATCTCCGTCTCCATT-AA 673
||||||| || || || ||||| | || || |||||||||| |||||| | || ||
Sbjct 537 ACCTCGT-GTTGATCACAAACGTGGGTGGTGCTGGAGATGTTAGGGCCGTCT-CTTTGAA 594
Query 674 AGGAACCAATAC--A-C-GTTGGCAAAGCATGTCAAGAAACTGGGGACAGAATTGGCAAA 729
||| | || || | | | |||||| ||||||||||||||||||||||||||||||||
Sbjct 595 AGGCTCAAAGACTGATCAG-TGGCAATCCATGTCAAGAAACTGGGGACAGAATTGGCAAA 653
Query 730 GCAA 733
||||
Sbjct 654 GCAA 657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44908796226
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5