BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G56360.1 Length=2303 Score E Sequences producing significant alignments: (Bits) Value Ahg950295 jgi|Araly1|950295|scaffold_802182.1 3083 0.0 > Ahg950295 jgi|Araly1|950295|scaffold_802182.1 Length=2005 Score = 3083 bits (1669), Expect = 0.0 Identities = 1905/2014 (95%), Gaps = 36/2014 (2%) Strand=Plus/Plus Query 56 CGGTTCCGATCTCGAAGAAGATGAGAGTAGTAGTAATATC-TTCCTTTGTCTCCGTCTCT 114 ||||||||||||||||||||||||||||||| |||||||| || ||| |||||||||||| Sbjct 1 CGGTTCCGATCTCGAAGAAGATGAGAGTAGTGGTAATATCATT-CTTGGTCTCCGTCTCT 59 Query 115 TTGCAACTATCCTTTCTTCTTCTCCTTGCTTCTGCCATTAGATCAAGCTCGTCTCCACCG 174 ||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| Sbjct 60 TTGCAACTATCCTTTCTTCTTCTCCTTGCTTCTTCTATTAGATCAACCTCGTCTCCACCT 119 Query 175 AACGATCCGTTTCTCGGCATTTCTCCTCAAGATGAGAAGTATTACAAGTCATCTTCAGAG 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 120 AACGATCCGTTTCTCGGCATTTCTCCTCAAGATGAGAAGTATTACAAGTCATCTTCTGAG 179 Query 235 ATTAAGTGTAAGGATGGATCAAAGAAATTCACGAAAGCTCAGCTTAATGACGATTTCTGT 294 || |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 180 ATAAAGTGTAAGGATGGATCAAAGAAATTCACGAAAGCTCAACTTAATGATGATTTCTGT 239 Query 295 GATTGTTCAGATGGAACTGACGAGCCAGGTACCTCAGCTTGTCCAACTGGAAAATTCTAT 354 |||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 240 GATTGTCCTGATGGAACTGACGAGCCAGGTACCTCAGCTTGTCCAAATGGAAAATTCTAT 299 Query 355 TGCCGGAACGCCGGCCACTCTCCGGTGATTTTGTTTTCTTCCAGAGTTAATGATGGTATT 414 || ||||| ||||||||||||||| || ||||||||||||||||||| |||||||||||| Sbjct 300 TGTCGGAATGCCGGCCACTCTCCGTTGGTTTTGTTTTCTTCCAGAGTCAATGATGGTATT 359 Query 415 TGTGATTGTTGTGATGGAAGTGATGAGTATGATGGTCACGTATCATGCCAAAATACATGC 474 |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 360 TGTGATTGTTGTGATGGAAGTGATGAGTATGATGGTCAAGTGTCATGCCAAAATACATGT 419 Query 475 TGGGAAGCTGGAAAAGCTGCTCGAGAAAATCTGAAGAAGAAAATTGAAACATATAATCAA 534 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 420 TGGGAAGCTGGGAAAGCTGCTCGAGAAAATCTGAAGAAAAAAATTGAAACATATAATCAA 479 Query 535 GGGCTTGTAATAAGGAGACAGGAAATCGAACAGGCGAAAGTGGGTCTGGAGAAAGATGCA 594 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 480 GGGCTTGTAGTAAGGAGACAGGAAATCGAACAGGCGAAAGTGGGTCTAGAGAAAGATGCA 539 Query 595 GCAGAATTGAAGAAGCTGAAAAGTG-AGCAGAAGATTCTGAAAGGCCTTGTTGATCAGCT 653 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 540 GCAGAATTGAAGAAGCTGAAAAGTGAAG-AGAAGATTCTGAAAGGCCTTGTTGATCAGCT 598 Query 654 GAAAGATCGTAAAGAACAAATTgagaaggtagaggagaaggagcgtctacagaaagaaaa 713 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 TAAAGATCGTAAAGAACAAATTGAGAAGGTAGAGGAGAAGGAGCGTCTACAGAAAGAAAA 658 Query 714 ggaggaaaaggaaaagaaagaggCCGAATTAGCAGCCCAGCAAGGAAAAGGGGATGCTGA 773 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 659 GGAGGAGAAGGAAAAGAAAGAGGCCGAATTAGCAGCCCAGCAAGGAAAGGGGGATGCTGA 718 Query 774 GGAGAAGACAGATGACAGTGAAAAAGTTGAAGAAAGCTCACATGATGAAGGGACGCCTGC 833 ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 719 GGAGAAGACAGATGACAATGAAAAAGTTGAAGAAAGCTCACATGATGAAGGGGCGCCTGA 778 Query 834 AGTTTCACA--AC-------A---CGATGAAACCACACATCATGATGAGATTGGTAATTA 881 ||||||||| || | |||||||||||||||||||||||||||||||||||| Sbjct 779 AGTTTCACAGCACGATGAAAATCCCGATGAAACCACACATCATGATGAGATTGGTAATTA 838 Query 882 CAAGGATTATCCTTCAGATGAGGAGCCA---GC---AGCTGAAGGT----GAAC--CAAC 929 ||| |||||||||||||| ||||||||| || |||||||| | ||| |||| Sbjct 839 CAAAGATTATCCTTCAGAAGAGGAGCCAGCTGCTGAAGCTGAAGCTAACCCAACAGCAAC 898 Query 930 AAGTATATTGGATGAGGCTACTCACACTAATCCAGCAGACGAGCATGTTGTGGAGA-GAA 988 |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| | | Sbjct 899 AAGTATATTGGAAGAGGCTACTCACACTCATCCAGCAGACGAGCATGTTGTGGAGACG-A 957 Query 989 AAGAGGAATCTACCTCATCTGAGGATTCCTCTTCCCCCACAGATGAATCTCAAAATGATG 1048 | ||||||||| ||||||||||||||| | | | |||||| | ||||||||||||| Sbjct 958 AGGAGGAATCTCCCTCATCTGAGGATT-C-CGT----CACAGAAGGGTCTCAAAATGATG 1011 Query 1049 GTAGTGCTGAAAAGGAGGAATCAGACGAGGTTAAGAAAGTGGAGGATTTTGTAACCGAGA 1108 ||||| | |||| ||||||||| ||||||||||||||||||||||| |||||||||| | Sbjct 1012 GTAGTACCAAAAAAGAGGAATCAAACGAGGTTAAGAAAGTGGAGGATCTTGTAACCGAAA 1071 Query 1109 AGAAGGAAGAGTTGTCAAAGGAAGAGTTGGGGCGTCTTGTTGCCTCTCGTTGGACAGGAG 1168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1072 AGAAGGAAGAGTTGTCAAAGGAAGAGTTGGGGCGTCTTGTTGCCTCTCGTTGGACAGGAG 1131 Query 1169 AGAAATCTGATAAGCCAACTGAGGCAGACGATATCCCCAAAGCTGATGATCAGGAAAACC 1228 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1132 AGAAATCTGATAAGCCAACTGAGGCAGACGATAGCCCCAAAGCTGATGATCAGGAAAACC 1191 Query 1229 ATGAGCACACGCCCATCACTGCACATGAAGCAGATGAAGATGATGGATTTGTTTCAGATG 1288 ||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 1192 ATGAGCACACGCCCACCACTCCACATGAAGTAGATGAAGATGATGGATTTGTTTCAGATG 1251 Query 1289 GTGATGAGGATACCAGCGATGATGGGAAATACAGCGACCATGAACCTGAAGATGATTCCT 1348 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1252 GTGACGAGGATACCAGCGATGATGGGAAATACAGCGACCATGAACCCGAAGATGATTCCT 1311 Query 1349 ATGAAGAGGAGTATCGCCATGATTCTAGTTCTTCATACAAATCTGATGCAGATGATGATG 1408 ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 1312 ATGAAGAGGAGTATCGCCATGATTCTACTTCTTCATACAAATCTGATGCCGATGATGATG 1371 Query 1409 TCGATTTTTCAGAGACAACCTCAAATCCTACTTGGTTGGAGAAGATACAAAAGACTGTCA 1468 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1372 TCGATTTTTCAGAGTCAACCTCAAATCCTACTTGGTTGGAGAAGATACAAAAGACTGTCA 1431 Query 1469 AGAACATTTTGCTGGCTGTGAATTTATTCCAAACCACCCCAGTGGACAAATCAGAGGCTG 1528 |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1432 AGAACATTTTGCAGGCTGTGAATTTATTCCAAACCACCCCAGTGGACAAATCGGAGGCTG 1491 Query 1529 ATCGGGTACGCAAAGAATACGACGAGTCAAGCTCCAAACTGAATAAAATACAGTCAAGGA 1588 |||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| Sbjct 1492 ATCGGGTACGCAAAGAATACGACGAGTCGAGCTCCAAACTGCACAAAATACAGTCAAGGA 1551 Query 1589 TATCGAGCTTAGAAAAGAAGCTAAAACAAGACTTTGGACCAGAGAAAGAGTTCTATTCAT 1648 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1552 TATCGAGCTTAGAAAAGAAGCTAAAACAAGACTTTGGACCGGAGAAAGAGTTCTATTCAT 1611 Query 1649 TCCATGGTCGTTGTTTTGAGAGCAAACAGGGCAAGTATACTTACAAAGTCTGCGCATATA 1708 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1612 TCCATGGTCGTTGTTTTGAGAGCAAACAGGGCAAGTATACTTACAAAGTCTGCGCATATA 1671 Query 1709 AAGAAGCAACACAAGAGGAGGGCTATTCGAAAACTCGGTTAGGGGAGTGGGACAAATTTG 1768 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1672 AAGAAGCAACACAAGAGGAGGGCTATTCGAAAACTCGGTTAGGGGAATGGGACAAATTTG 1731 Query 1769 AGAACTCTTACCAATTCATGTCATATACCAACGGAGAAAAATGCTGGAATGGTCCCGATA 1828 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 1732 AGAACTCTTACCAATTCATGTCATATACCAACGGAGATAAATGCTGGAACGGTCCCGATA 1791 Query 1829 GAAGCCTGAAGGTGAAACTAAGATGTGGGTTGAAAAATGAGCTTATGGATGTCGATGAAC 1888 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1792 GAAGCCTTAAGGTGAAACTAAGATGTGGGTTGAAAAATGAGCTTATGGATGTCGATGAAC 1851 Query 1889 CAAGCCGTTGCGAATATGCGGCCATCTTATCTACTCCAGCTCGGTGTTTGGAAGACAAAC 1948 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1852 CAAGCCGTTGCGAATATGCGGCGATCTTATCTACTCCAGCTCGGTGTTTGGAAGACAAAC 1911 Query 1949 TTAAAGAACTACAACAGAAGCTCGAGAAGTTGATGAACCAAGACAAACCTCAGAATCACG 2008 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1912 TTAAAGAACTACAACAGAAGCTCGAGAAGTTGATGAACCAAGACAAACCCCAGAATCACG 1971 Query 2009 ACGAACTCTGATCATTTTCACCTGAAATAATTCT 2042 ||||||||||||||||| || ||||||||||||| Sbjct 1972 ACGAACTCTGATCATTTCCATCTGAAATAATTCT 2005 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86731487865 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5