BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56500.1
Length=2318
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495739 jgi|Araly1|495739|fgenesh2_kg.8__1555__AT5G56500.1 3249 0.0
Ahg474606 jgi|Araly1|474606|fgenesh2_kg.1__4560__AT1G55490.2 1232 0.0
Ahg355482 jgi|Araly1|355482|fgenesh1_pg.C_scaffold_7002655 424 2e-117
> Ahg495739 jgi|Araly1|495739|fgenesh2_kg.8__1555__AT5G56500.1
Length=2305
Score = 3249 bits (1759), Expect = 0.0
Identities = 2144/2322 (92%), Gaps = 57/2322 (2%)
Strand=Plus/Plus
Query 27 AAACCTCTCTCAGTCGCTAAAACCCTTGAACCATCTCTTGATCGCTAG-CTTCT--AAAG 83
||||||||| ||||||||||||||||||| |||||||||||||||| | || | | ||
Sbjct 1 AAACCTCTCGCAGTCGCTAAAACCCTTGATCCATCTCTTGATCGCT-GATTTTTGCAGAG 59
Query 84 AGTGAAAAACCATGGCATCAACCTTTAGCGCAACGTCGTCAATGGGTTCATCTTTGGCTC 143
|||| |||| ||||||||||| |||||||||||||| ||||||||||||| ||||||||
Sbjct 60 AGTG--AAACTATGGCATCAACTTTTAGCGCAACGTCTTCAATGGGTTCATGTTTGGCTC 117
Query 144 CTCCTTCGAATCGATTGTCATCTTTTGTTTCGATCTCATCAAGCTCTTTTGGAAGGACTC 203
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 118 CTCCTTCGAATCGATTGTCATCTTTTGTTTCGATCTCATCAAGCTCTTTTGGAAAGAGTC 177
Query 204 AGAGTATTGCTCAGAGGAAAGCAAGGTTTCCTAAAATATATGCGGCTAAGCAATTGCATT 263
||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 178 AGACTTTTGCTCAGAGGAAAGCAAGGTTTCCTAAAATCTATGCGGCTAAGCAATTGCATT 237
Query 264 TCAATAAGGACGGGACTGCGATTAAGAAGCTTCAAGCTGGTGTGAATAAACTTGCGGATT 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TCAATAAGGACGGGACTGCGATTAAGAAGCTTCAAGCTGGTGTGAATAAACTTGCGGATT 297
Query 324 TAGTTGGGGTTACTTTAGGTCCTAAAGGCAGGAATGTTGTTCTAGAGAGCAAATACGGTT 383
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 298 TAGTTGGGGTTACTTTAGGTCCTAAAGGCAGGAATGTTGTTTTAGAGAGCAAATACGGTT 357
Query 384 CCCCTAGAATCGTTAATGATGGTGTTACGGTCGCTAGAGAGGTTGAGCTTGAGGATCCAG 443
||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 358 CCCCTAGAATCGTAAATGACGGTGTTACAGTCGCTAGAGAGGTTGAGCTTGAGGATCCAG 417
Query 444 TTGAGAACATTGGTGCTAAGCTAGTGAGACAAGCTGCTTCCAAGACTAATGACTTAGCTG 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TTGAGAACATTGGTGCTAAGCTAGTGAGACAAGCTGCTTCCAAGACTAATGACTTAGCTG 477
Query 504 GTGATGGAACAACGACTTCTGTTGTTCTTGCTCAAGGTCTTATTGCTGAAGGTGTAAAGG 563
||||||||||||||||||||||||||||||| |||||||| || || |||||||||||||
Sbjct 478 GTGATGGAACAACGACTTCTGTTGTTCTTGCGCAAGGTCTCATCGCCGAAGGTGTAAAGG 537
Query 564 TGGTAGCTGCTGGTGCAAATCCTGTTTTGATTACCAGAGGTATTGAGAAAACCACCAAAG 623
|||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 538 TGGTGGCTGCTGGTGCAAATCCGGTTTTGATTACCAGAGGTATCGAGAAAACCACCAAGG 597
Query 624 CTCTTGTGGCTGAGTTGAAGAAAATGTCAAAGGAGGTTGAAGACAGTGAACTAGCAGATG 683
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 598 CTCTTGTTGCTGAGTTGAAGAAAATGTCAAAGGAGGTCGAAGACAGTGAACTAGCAGATG 657
Query 684 TTGCAGCAGTTAGTGCAGGAAACAATTACGAAGTAGGCAATATGATTGCAGAAGCAATGG 743
||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 658 TTGCAGCGGTTAGTGCAGGAAACAATTACGAAGTTGGTAATATGATTGCGGAAGCAATGG 717
Query 744 CAAAAGTTGGTCGTAAAGGTGTTGTCACTCTAGAGGAAGGCAAAAGCGCTGAGAACAGCC 803
|||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 718 CAAAAGTTGGTCGTAAGGGTGTTGTTACTCTCGAGGAAGGAAAAAGCGCTGAGAACAGCC 777
Query 804 TTTACGTTGTTGAAGGAATGCAATTTGATCGTGGTTATATCTCTCCTTACTTTGTCACCG 863
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTTATGTTGTTGAAGGAATGCAATTTGATCGTGGTTATATCTCTCCTTACTTTGTCACCG 837
Query 864 ACAGTGAGAAAATGTGTGCAGAATATGAGAACTGCAAGTTGTTTCTTGTTGACAAAAAGA 923
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 838 ACAGTGAGAAAATGTCTGCAGAATACGAGAACTGCAAGTTGTTTCTTGTTGACAAAAAAA 897
Query 924 TAACAAATGCTAGAGATATTATTAGCATTCTGGAAGATGCGATTAAAGGTGGATACCCGC 983
|||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 898 TAACAAATGCTAGAGACATTATCAACATTCTGGAAGATGCGATTAAAGGTGGATACCCGC 957
Query 984 TTTTGATCATTGCTGAAGATATTGAGCAAGAGCCATTAGCGACTCTTGTTGTTAACAAGC 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TTTTGATCATTGCTGAAGATATTGAGCAAGAGCCATTAGCGACTCTTGTTGTTAACAAGC 1017
Query 1044 TTCGTGGGACAATAAAAGTTGCTGCTTTGAAAGCTCCTGGATTTGGAGAGAGGAAAAGCC 1103
|||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1018 TTCGCGGAACAATAAAAGTTGCTGCTCTGAAAGCTCCTGGATTTGGAGAGAGGAAAAGCC 1077
Query 1104 AGTACCTTGATGACATTGCTGCGCTTACAGGAGCTACTGTGATTAGGGAAGAAGTTGGAC 1163
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1078 AGTACCTTGATGACATTGCTGCTCTTACAGGAGCTACTGTGATTAGGGAAGAAGTTGGGC 1137
Query 1164 TTCAGTTGGAGAAAGTTGGACCAGAAGTTTTGGGTAATGCTGGTAAAGTGGTTCTCACAA 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TTCAGTTGGAGAAAGTTGGACCAGAAGTTTTGGGTAATGCTGGTAAAGTGGTTCTCACAA 1197
Query 1224 AAGATACTACAACGATAGTTGGTGATGGAAGTACTGAAGAAGTTGTGAAGAAGAGAGTTG 1283
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AAGACACTACGACGATAGTTGGTGATGGAAGTACTGAAGAAGTTGTGAAGAAGAGAGTTG 1257
Query 1284 AACAGATCAAGAATCTTATCGAGGCTGCTGAACAAGACTATGAAAAGGAAAAGCTTAATG 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 AACAGATCAAGAATCTTATCGAGGCTGCTGAACAAGACTATGAAAAGGAAAAGCTTAATG 1317
Query 1344 AGAGAATTGCTAAATTATCAGGCGGTGTTGCTGTAATTCAGGTTGGAGCACAAACTGAGA 1403
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1318 AGAGAATTGCTAAATTATCAGGCGGTGTTGCTGTAATTCAGGTTGGAGCTCAAACTGAGA 1377
Query 1404 CAGAGCTTAAGGAGAAGAAATTAAGAGTTGAAGATGCTCTTAATGCTACAAAGGCTGCTG 1463
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1378 CAGAGCTTAAGGAGAAGAAATTGAGAGTTGAAGATGCTCTTAATGCTACAAAGGCTGCTG 1437
Query 1464 TGGAAGAAGGTATTGTTGTTGGCGGAGGATGTACTCTGCTAAGACTTGCATCGAAAGTGG 1523
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1438 TGGAAGAAGGTATTGTTGTTGGAGGAGGATGTACTCTGCTAAGACTTGCATCGAAAGTGG 1497
Query 1524 ACGCTATTAAAGAGACTCTAGCAAACGATGAAGAAAAGGTTGGAGCTGACATTGTTAAGA 1583
| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 ATGCCATTAAAGAGACACTAGCAAACGATGAAGAAAAGGTTGGAGCTGACATTGTTAAGA 1557
Query 1584 AAGCATTGAGCTACCCACTGAAGTTAATCGCCAAGAACGCTGGTGTCAATGGCAGCGTTG 1643
||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 1558 AAGCATTGAGCTACCCATTGAAGTTAATCGCCAAGAACGCTGGTGTAAATGGTAGCGTCG 1617
Query 1644 TCAGTGAGAAGGTTCTTTCTAGTGACAACCCTAAACATGGTTACAATGCTGCAACTGGCA 1703
|||||||||||||||| ||||| |||||||| ||||| |||||||| |||||||||||||
Sbjct 1618 TCAGTGAGAAGGTTCTCTCTAGCGACAACCCAAAACACGGTTACAACGCTGCAACTGGCA 1677
Query 1704 AATACGAAGATCTCATGGCTGCAGGAATCATTGATCCAACCAAAGTTGTGAGATGTTGCC 1763
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 AATACGAAGATCTAATGGCTGCAGGAATCATTGATCCAACCAAAGTTGTGAGATGTTGCT 1737
Query 1764 TAGAGCATGCTTCATCTGTGGCAAAGACATTCTTGATGTCTGATTGTGTTGTTGTGGAGA 1823
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1738 TAGAGCATGCTTCATCTGTGGCTAAGACATTCTTGATGTCTGATTGTGTGGTTGTGGAGA 1797
Query 1824 TCAAGGAGCCTGAATCAGCAGCTCCTGCTGGTAACCCTATGGACAATTCAGGTTACGGCT 1883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 TCAAGGAGCCTGAATCAGCAGCTCCTGCTGGTAACCCTATGGACAATTCAGGTTACGGCT 1857
Query 1884 TCTAAGTTGGCAATTGAGAACAGAGTA-G--TC--C-CTGATGAAGCAAAAGCCACGACC 1937
|||||||| ||||||||||| |||||| | | | |||| ||||||||| ||||||||
Sbjct 1858 TCTAAGTTAGCAATTGAGAAGAGAGTAAGAGTAGTCTCTGAGGAAGCAAAAACCACGACC 1917
Query 1938 AAGTTCTTCACTTCCTGATCTGAAACTTCTTTAAGCCAATGTAAATTATATGTTTTTCCA 1997
||| |||| | |||||||| |||||| ||||| |||||||||||| | ||||||||||||
Sbjct 1918 AAGCTCTTTATTTCCTGATATGAAACATCTTTTAGCCAATGTAAAAT-TATGTTTTTCCA 1976
Query 1998 GTGACCTGAAGAAACATATAATTTGGTT-CTGTGTTCTCCGATTCAAGATCAAGTTTTTC 2056
|||||||||||||||||||||||||||| | ||||||| | ||| |||||||| ||||
Sbjct 1977 GTGACCTGAAGAAACATATAATTTGGTTTCC-TGTTCTCTGTTTCTTGATCAAGTGTTTC 2035
Query 2057 AATATGA-CAACTTCACTAAAGA--GACA--------CAGTTTGCAGTGCTCAATAGACT 2105
||||||| | |||||| ||||| || | |||||||||||| |||||||| |
Sbjct 2036 AATATGATC--CTTCACGAAAGAATGATATGATTTTGCAGTTTGCAGTGGTCAATAGATT 2093
Query 2106 TGATTTAGTTAG--TATCATTTTCTTTATTTCAAATTAAAACGAAC-G-AG-GATAT-G- 2158
|||||| ||||| ||||||||||||| | ||||||||||||||| | | | | | |
Sbjct 2094 TGATTTGGTTAGAGTATCATTTTCTTTCTCTCAAATTAAAACGAAATGTAATGTTGTTGT 2153
Query 2159 CACAAAAT-CATGAGCAGCAACAAGCCAACAACCAAGC-A-CAATACTAAATTACTACTT 2215
| | | | | | || || || || || ||| | | ||| | |||| |||| ||
Sbjct 2154 CTCCCGGTTCCTTACCAAAAAAAA---AA-AAGCAA-CTATCAAG-CAAAAT-ACTAATT 2206
Query 2216 TGTTTGTGGTTTT-T-TGTGGCCTCCATAGCCAATAT------CTTGATA-CTTTAAAAT 2266
| ||| | |||| | |||||| |||||||||||||| |||||| || ||||||
Sbjct 2207 TTTTT-T--TTTTGTGTGTGGCTTCCATAGCCAATATATATATCTTGATTTCTGTAAAAT 2263
Query 2267 TGTAATCTATTTAATTAGTTCAACAATTCTCTTTACCTGAGC 2308
|||||||||||| ||||||| |||||||||||||| |||||
Sbjct 2264 TGTAATCTATTTGGTTAGTTCGACAATTCTCTTTACATGAGC 2305
> Ahg474606 jgi|Araly1|474606|fgenesh2_kg.1__4560__AT1G55490.2
Length=2055
Score = 1232 bits (667), Expect = 0.0
Identities = 1350/1677 (81%), Gaps = 57/1677 (3%)
Strand=Plus/Plus
Query 240 TATATGCGGCTAAGCAATTGCATTTCAATAAGGACGGGACTGCGATTAA-GAAGCTTCAA 298
||| ||| || ||| |||| |||||||| || || |||||| | | ||| ||| ||||||
Sbjct 287 TATGTGCAGCCAAGGAATTACATTTCAACAAAGATGGGACTACCA-TAAGGAAACTTCAA 345
Query 299 GCTGGTGTGAATAAACTTGCGGA-TTTAGTTGGGGTTAC-TTTAGGTCCTAAAGGCA-GG 355
|||||||| || |||||||| || || ||||| ||||| || || || ||||| | |
Sbjct 346 GCTGGTGTCAACAAACTTGCAGACCTT-GTTGGTGTTACACTT-GGACCCAAAGG-ACGA 402
Query 356 AATGTTGTTCTAGAGAGCAAATACGGTTCCCCTAGAATCGTTAATGATGGTGTTACGGTC 415
|||||||| || |||||||| || || || || ||||| |||||||| ||||| || ||
Sbjct 403 AATGTTGTCCTTGAGAGCAAGTATGGATCACCAAGAATTGTTAATGACGGTGTGACTGTT 462
Query 416 GCTAGAGAGGTTGAGCTT-GAGGATCCAGTTGAGAACATTGGTGCTAAGCTAGTGAGACA 474
|| |||||||||||| || || || || ||||||||||||||||||||||| ||||| ||
Sbjct 463 GCAAGAGAGGTTGAG-TTGGAAGACCCGGTTGAGAACATTGGTGCTAAGCTTGTGAGGCA 521
Query 475 AGCTGCTTCCAAGACTAATGACTTAGCTGGTGATGGAACAACGACTTCTGTTGTTCTTGC 534
||| ||| |||| || |||||||| |||||||| || ||||| || ||||||||||||||
Sbjct 522 AGCGGCTGCCAAAACCAATGACTTGGCTGGTGACGGTACAACAACATCTGTTGTTCTTGC 581
Query 535 TCAAGGTCTTATTGCTGAAGGTGTAAAGGTGGTAGCTGCTGGTGCAAATCCTGTTTTGAT 594
|||||| |||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 582 ACAAGGTTTTATTGCTGAGGGTGTCAAGGTGGTAGCTGCTGGTGCAAACCCTGTTTTGAT 641
Query 595 TACCAGAGGTATTGAGAAAACCACCAAA-GCTCTT-GTGGCTGAGTTGAAGAAAATGTCA 652
||||||||||||||||| | || |||| ||| || || | ||| | |||||||||||
Sbjct 642 CACCAGAGGTATTGAGAAGA-CAGCAAAGGCT-TTGGTTACCGAGCTCAAGAAAATGTCT 699
Query 653 AAGGAGGTTGAAGACAGTGAACTAGCAGATGTTGCAGCAGTTAGTGCAGGAAACAATTAC 712
|||||||| |||||||||||||| |||||||||||||| |||||||| || ||||| |
Sbjct 700 AAGGAGGTGGAAGACAGTGAACTTGCAGATGTTGCAGCTGTTAGTGCTGGTAACAACGAT 759
Query 713 GAAGTAGGCAATATGATTGCAGAAGCAATG-GCAAAAGTTGGTC-GTAAAGGTGTTGTCA 770
||| | || ||||||||||| ||||||||| || |||| ||| | | |||||||| || |
Sbjct 760 GAAATTGGAAATATGATTGCTGAAGCAATGAGC-AAAG-TGGGCAGGAAAGGTGTGGTGA 817
Query 771 CTCTAGAGGAAGGCAAAAGCGCTGAGAACAGCCTTTACGTTGTTGAAGGAATGCAATTTG 830
| || ||||| || ||||| || ||||||| ||| ||||| || ||||||||||||||||
Sbjct 818 CCCTTGAGGAGGGTAAAAGTGCCGAGAACAACCTCTACGTCGTGGAAGGAATGCAATTTG 877
Query 831 ATCGTGGTTATATCTCTCCTTACTTTGTCACCGACAGTGAGAAAATGTGTG-CAGAATAT 889
|||||||||||||||| ||||||||||| || ||||| |||||||||| || | || | |
Sbjct 878 ATCGTGGTTATATCTCCCCTTACTTTGTGACAGACAGCGAGAAAATGTCTGTC-GAGT-T 935
Query 890 -GAGAACTGCAAGTTGTTTCTTGTTGACAA-AAAGATAACAAATGCTAGAGATATTATTA 947
|| || |||||||| |||| ||||| || ||| || || ||||| |||||| || ||
Sbjct 936 CGACAATTGCAAGTTACTTCTCGTTGATAAGAAA-ATTACCAATGCAAGAGATCTTGTTG 994
Query 948 GCATTCTGGAAGATGCGATTAAAGGTGGATACCCGCTTTTGATCATTGCTGAAGATATTG 1007
| || |||| ||||| |||| |||||||||||| | || || ||||| ||||| ||||
Sbjct 995 GTGTTTTGGAGGATGCAATTAGAGGTGGATACCCAATATTAATAATTGCAGAAGACATTG 1054
Query 1008 AGCAAGA-GCCATTAGCGACTCTTGTTGTTAACAAGCTTCGTGGGACAATAAA-AGTTGC 1065
| ||||| || ||||| ||||||||||| ||||||||| | || ||| | || | ||||
Sbjct 1055 AACAAGAAGCT-TTAGCTACTCTTGTTGTAAACAAGCTTAGAGGTACACTGAAGA-TTGC 1112
Query 1066 TGCTTTGAAAGCTCCTGGATTTGGAGAGAGGAAAAGCCAGTACCTTGATGACATTGCTGC 1125
||| | | |||||| |||||||||||| | || ||||| |||||||| || |||||
Sbjct 1113 AGCTCTCAGAGCTCCAGGATTTGGAGAGCGCAAGAGCCAATACCTTGACGATATTGCCAT 1172
Query 1126 GCTTACAGGAGCTACTGTGATTAGGGAAGAAGTTGGACTT-CAGTTGGAGAAAGTTGGAC 1184
|| || ||||| |||||||| | || |||||||| ||| || ||| | |||| ||||
Sbjct 1173 TCTAACTGGAGCAACTGTGATCCGAGAGGAAGTTGGTCTTTCACTTG-ACAAAGCTGGAA 1231
Query 1185 CAGAAGTT-TTGGGTAATGCTGGTAAAG-TGGTTCTCACAAAAGATACTACAACGATAGT 1242
||| ||| |||| ||| ||| |||| | || ||||| || || ||| | || |||||
Sbjct 1232 AAGAGGTTCTTGG-TAACGCTTC-AAAGGTCGTCCTCACGAAGGAGACTTCGACCATAGT 1289
Query 1243 TGGTGATGGAAGTACTGAAGAAGTTGTGAAGAAGAGAGTTGA-ACAGATCAAGAATCTTA 1301
||||||||||| || | || | ||||| ||| | ||| | |||||| || |||||||
Sbjct 1290 GGGTGATGGAAGCACACAGGATGCAGTGAAAAAGCGTGTT-ATACAGATAAAAAATCTTA 1348
Query 1302 TCGAGGCT-GCTGAACAAGACTATGAAAAGGAAAAGCTTAATGAGAGAATTGCTAAAT-T 1359
| ||| | || || ||||| ||||| |||||||| || |||||||||||||| ||| |
Sbjct 1349 TTGAG-CAAGCAGAGCAAGATTATGAGAAGGAAAAACTGAATGAGAGAATTGC-AAAGCT 1406
Query 1360 ATCAGGCGGTGTTGCTGTAATTCAGGTTGGAGCACAAACTGAGACAGAGCTTAAGGAGAA 1419
|| || || |||||||| ||||||||||||||||||||||||||||| || || |||||
Sbjct 1407 CTCTGGTGGAGTTGCTGTGATTCAGGTTGGAGCACAAACTGAGACAGAACTCAAAGAGAA 1466
Query 1420 GAAATTAAGAGTTGAAGATGCTCTTAATGCTACAAAGGCTGCTGTGGAAGAAGGTATTGT 1479
||| || |||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 1467 GAAGTTGAGAGTTGAAGATGCTCTTAATGCTACAAAGGCCGCTGTCGAGGAAGGTATTGT 1526
Query 1480 TGTTGGCGGAGGATGTACTCTGCTAAGACTTGCATCGAAAGTGGACGCTATTAAAGAGAC 1539
|||||| || || || |||||||| | ||||| || || || || || ||||||| ||
Sbjct 1527 TGTTGGTGGTGGTTGCACTCTGCTTCGTCTTGCTTCCAAGGTTGATGCCATTAAAGCCAC 1586
Query 1540 TCTAGCA-AACGATGAAGAAAAGGTTGGAGCTGACATTGTTAAGAA-AGCATTGAGCTA- 1596
||| | | || |||||||||||||||||||| || || || || || |||| |||| ||
Sbjct 1587 TCTTG-ATAATGATGAAGAAAAGGTTGGAGCGGATATCGTCAA-AAGAGCACTGAGTTAT 1644
Query 1597 CCCACTGAAGTTAATCGCCAAGAACGCTGGTGTCAATGGCAGCGTTGTCAGTGAGAAGGT 1656
||| || || | ||||||||||| |||||||| ||||| ||||| || || ||||||||
Sbjct 1645 CCC-CTAAAACTGATCGCCAAGAATGCTGGTGTTAATGGAAGCGTAGTTAGCGAGAAGGT 1703
Query 1657 TCTTTCTAGTGACAACCCTAAACAT--GGTTACAATGCTGCAACTGGCAAATACGAAGAT 1714
||||| | || ||| | || || ||||||||||||||||| ||||| ||||| |||
Sbjct 1704 GCTTTCCAACGATAACG-TGAA-ATTCGGTTACAATGCTGCAACCGGCAAGTACGAGGAT 1761
Query 1715 CTCATGGCTGCAGGAATCATTGATCCAACCAAAG-TTGTGAGATGTTGCCTAGAGCATGC 1773
| ||||||||||||||||| |||||||| |||| |||||||||||||| | ||||| ||
Sbjct 1762 TTGATGGCTGCAGGAATCATCGATCCAAC-AAAGGTTGTGAGATGTTGCTTGGAGCACGC 1820
Query 1774 TTCATCTGTGGCAAAGACATTCTTGATGTCTGATTGTGTTGTTGTGGAGATCAAGGAGCC 1833
| || || |||||||| ||||||||||| || ||||||||||| ||||||||||| ||
Sbjct 1821 AGCTTCGGTTGCAAAGACGTTCTTGATGTCGGACTGTGTTGTTGTTGAGATCAAGGAACC 1880
Query 1834 TGAATCAGCAGCTCCTG-CTGGTAACCCTATGGACAATTCAGGTTACGGCTTCTAAG 1889
|||| | ||| ||| | | || ||||| |||||||| ||||| || || | |||||
Sbjct 1881 TGAA-C--CAGTTCCCGTC-GGCAACCCAATGGACAACTCAGGATATGGATACTAAG 1933
> Ahg355482 jgi|Araly1|355482|fgenesh1_pg.C_scaffold_7002655
Length=342
Score = 424 bits (229), Expect = 2e-117
Identities = 270/290 (93%), Gaps = 2/290 (1%)
Strand=Plus/Plus
Query 1275 AGAGAGT-TGAACAGATCAAGAATCTTATCGAGGCTGCTGAACAAGACTATGAAAAGGAA 1333
|||| || ||||||||||| ||||||||| |||||| |||||||||||||||||||||||
Sbjct 38 AGAG-GTGTGAACAGATCACGAATCTTATTGAGGCTACTGAACAAGACTATGAAAAGGAA 96
Query 1334 AAGCTTAATGAGAGAATTGCTAAATTATCAGGCGGTGTTGCTGTAATTCAGGTTGGAGCA 1393
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 97 AAGCTTAACGAGAGAATTGCTAAATTATCAGGCGGTGTTGCTGTAATTCAGGTTGGAGCA 156
Query 1394 CAAACTGAGACAGAGCTTAAGGAGAAGAAATTAAGAGTTGAAGATGCTCTTAATGCTACA 1453
||||| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 157 CAAACCGAGACAGAGCTTAAGGAGAATAAATTGAGAGTTGAAGATGCTCTTAACGCTACA 216
Query 1454 AAGGCTGCTGTGGAAGAAGGTATTGTTGTTGGCGGAGGATGTACTCTGCTAAGACTTGCA 1513
||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 217 AAGGCGGCTGTGGAAGAAGGTATCGTTGTTGGAGGAGGATGCACTCTGCTAAGACTTGCA 276
Query 1514 TCGAAAGTGGACGCTATTAAAGAGACTCTAGCAAACGATGAAGAAAAGGT 1563
|| |||||||| || |||||||| ||||||||||| |||||||||||||
Sbjct 277 TCAAAAGTGGATGCCATTAAAGACACTCTAGCAAAAAATGAAGAAAAGGT 326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87302841540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5