BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G56544.1 Length=605 Score E Sequences producing significant alignments: (Bits) Value Ahg950326 jgi|Araly1|950326|scaffold_802213.1 104 8e-22 > Ahg950326 jgi|Araly1|950326|scaffold_802213.1 Length=513 Score = 104 bits (56), Expect = 8e-22 Identities = 98/116 (84%), Gaps = 12/116 (10%) Strand=Plus/Plus Query 256 GGAATGCTAGTGTTGAATCATGCGGATGAACGAGTACTAGGACTTCACTTCACTTGCTAC 315 |||| ||||||||||||||||||||||||||||| |||||||||||||| | ||||| Sbjct 243 GGAAAGCTAGTGTTGAATCATGCGGATGAACGAGCACTAGGACTTCACT-C----GCTAC 297 Query 316 GATTTGCGTTTTTTGCAGACTATTGAGAAAGTATGTACCAATTTGTTACCAAGCGT 371 ||||| | | | ||||| ||||| |||||| ||||||||||||||||||||| Sbjct 298 GATTTTC-T-----G-AGACTGTTGAGGAAGTATTTACCAATTTGTTACCAAGCGT 346 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22111291860 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5