BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56630.1
Length=2082
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495754 jgi|Araly1|495754|fgenesh2_kg.8__1570__AT5G56630.1 2952 0.0
Ahg492186 jgi|Araly1|492186|fgenesh2_kg.7__1619__AT4G26270.1 893 0.0
> Ahg495754 jgi|Araly1|495754|fgenesh2_kg.8__1570__AT5G56630.1
Length=2015
Score = 2952 bits (1598), Expect = 0.0
Identities = 1908/2047 (93%), Gaps = 64/2047 (3%)
Strand=Plus/Plus
Query 45 GTGATCGTCAGCTTTATATAT-TATATACACGAGAATCTTGTACCCAATTAACATATACA 103
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 24 GTGATCGTCAGCTTTATATATATATATACACGAGAATCTTGTACCCAATTAACATATACA 83
Query 104 TACATGTAAATGTGTGTATGTATATAATATAAAATTATTCTCCTTTTCACTAATTTTTCT 163
||||||| || ||||| ||||| | |||| | | |||||||||| ||||||
Sbjct 84 TACATGT-AA-GTGTG--TGTATGT-ATAT---A--A------TTTTCACTAAATTTTCT 127
Query 164 TCAAATAC-TTTAATGCCCACCACCTGTTCGATCAAATTCCCCATCTCGAAAAGCTAGAA 222
|||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 128 TCAAATACTTTTAATGCCCACCACCTGTTCGATCAAATTCCCAATCTCAAAAAGCTAGAA 187
Query 223 ctttcttcgtctctattggtctctcactctctctcttacctcttctcatttgttctttct 282
|||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||
Sbjct 188 CTTTCTTCGTCTCTATTGGTCTCTCACTCTGTCTCTTACCTTTTCTGATTTGTTCTTTCC 247
Query 283 ccttctAAATTGGGTTATCAAGTATATTGGATCAACGGGTTTGATTCACGATTTGTCATT 342
||| | ||||||||| ||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 248 CCTACAAAATTGGGTCATCAAGTATATTGGATCAAAGGGTTTGATTCACGATTTCTCATT 307
Query 343 TCATCTTCGTGGAGAGAG--TTTGATCTGATTTGTTGATCGTCAGCGTTATGTCTAGTCC 400
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 308 TCATCTTCGTGGAGAGAGTTTTTGATCTGATTTGTTGATCGTCTCCGTTATGTCTAGTCC 367
Query 401 GAGAAGTAACAAGCCGAAGATTGTCAACGGTCCTGGTGGTTATATTCTACAAGACGTTCC 460
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 368 GAGAAGTAACAAGCCGAAGATCGTCAACGGTCCTGGTGGTTATATTCTTCAAGACGTTCC 427
Query 461 TCATCTCATTGATTACCTTCCTGATCTTCCTACTTATCCAAATCCATTGCAAGACAATCC 520
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 428 TCATCTCATTGATTATCTTCCTGATCTTCCTACTTATCCGAATCCATTGCAAGACAATCC 487
Query 521 AGCTTACTCAGTGGTTAAGCAATACTTTGTTCATGCTGATGATAGTGTCCCTGAGAAGGT 580
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 488 AGCTTACTCAGTGGTTAAGCAATACTTTGTTGATGCAGATGATAGTGTCCCTGAGAAGGT 547
Query 581 TGTTGTTCACAAGGATGGTCCAAGAGGAGTCCATTTCAGGCGTGCTGGTCCACGTCAAAA 640
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 548 TGTTGTTCACAAGGATGGTCCAAGAGGAATCCATTTCAGGCGCGCTGGTCCACGTCAAAA 607
Query 641 GGTTTACTTTGAGTCTGACGAAGTGCATGCTTGTATAGTTACATGTGGAGGTCTCTGTCC 700
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 608 GGTTTACTTTGAGTCTGATGAAGTGCATGCTTGCATAGTTACATGTGGAGGTCTCTGTCC 667
Query 701 CGGTCTCAATACCGTGATTAGAGAAGTTGTGAGCAGCTTATCATACATGTATGGAGTAAA 760
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 668 CGGTCTCAATACCGTCATTAGAGAAATTGTGAGCAGCTTATCATACATGTATGGAGTGAA 727
Query 761 GAGAATTCTTGGAATCGATGGTGGATACAGAGGATTTTACGCCAAGAATACTATCCCCTT 820
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 728 GAGAATCCTTGGAATCGATGGTGGATACAGAGGATTCTACGCCAAGAATACTATCCCCTT 787
Query 821 AAACTCTAAAGTCGTGAATGATATCCATAAACGCGGAGGAA-CAATCATTGGGACCTCAA 879
|||||||||||||||||||||||||||||| |||||||||| || || | ||||||||||
Sbjct 788 AAACTCTAAAGTCGTGAATGATATCCATAAGCGCGGAGGAACCATTC-TCGGGACCTCAA 846
Query 880 GAGGTGGACATGATACCAAC-AAGATAGTTGATAGCATTCAAGATCGAGGAATCAATCAG 938
|||||||||| |||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 847 GAGGTGGACACGATACC-ACGAAGATAGTTGATAGCATTCAAGATCGAGGAATTAATCAG 905
Query 939 GTTTACATTATTGGAGGAGATGGAACCCAGCGAGGTGCTTCAGTAATATTTGAGGAAATT 998
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 906 GTTTACATTATTGGAGGAGATGGAACCCAGAGAGGTGCTTCAGTAATATTTGAGGAAATT 965
Query 999 AGAAGACGTCGACTAAAAGTTGCTGTGGTTGGAATTCCAAAAACTATTGATAATGATATT 1058
||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 966 AGAAGACGTGGACTTAAAGTTGCTGTGGTTGGAATTCCGAAAACTATTGATAATGATATT 1025
Query 1059 CCGGTGATAGATAAATCTTTTGGGTTTGACACTGCTGTGGAGGAAGCTCAACGAGCGATT 1118
|| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1026 CCTGTAATAGACAAATCTTTTGGGTTTGACACTGCTGTGGAGGAAGCTCAACGAGCAATT 1085
Query 1119 AACGCAGCACATGTTGAAGCCGAGAGTAATGAGAATGGTATCGGTTTTGTCAAGCTTATG 1178
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1086 AACGCAGCACATGTCGAAGCTGAGAGCAATGAGAATGGTATCGGTTTTGTCAAGCTTATG 1145
Query 1179 GGTCGTTACAGCGGGTACATAGCGATGTATGCTACATTAGCCAGCAGAGATGTTGACTGT 1238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 GGTCGTTACAGCGGGTTCATAGCGATGTATGCTACATTAGCCAGCAGAGATGTTGACTGT 1205
Query 1239 TGCTTGATTCCCGAGTCACCATTTTACCTCGAAGGAGAAGGTGGACTCTTTGAGTTCATA 1298
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1206 TGCTTGATTCCTGAGTCACCATTTTACCTCGAAGGAGAAGGTGGACTCTTTGAGTTCGTA 1265
Query 1299 GAGAGACGGCTGAAGGATCATGGTCACATGGTGATTGTTCTTGCTGAGGGTGCAGGACAG 1358
||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1266 GAGAGACGGCTCAAGGAGCATGGTCACATGGTGATTGTTCTTGCTGAAGGTGCAGGACAG 1325
Query 1359 GATTTGATGTGCAAAAGCATGGAATCTACTCCTATGGATGCTTCTGGGAACAAACTTCTT 1418
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1326 GATTTGATGTGCAAAAGCATGGAATCTACTCTTAAGGATGCTTCTGGGAACAAACTTCTT 1385
Query 1419 AAAGATGTCGGCTTGTGGCTATCACAAAGCATCAAGGATCATTTTAAGAAGAATAAGATG 1478
||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||
Sbjct 1386 AAAGATGTCGGCTTGTGGCTATCACAAAGCATCAAGGTTTATTTTAATAAGAATAAGATG 1445
Query 1479 GTGATGAATCTCAAATACATTGATCCTACATACATGATCCGGGCTGTTCCAAGTAATGCA 1538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 GTGATGAATCTCAAATACATTGATCCTACATACATGATCCGGGCTGTTCCAAGTAATGCA 1505
Query 1539 TCAGACAATGTTTACTGTACACTTCTTGCTCAGAGCGCGGTTCATGGTGCAATGGCTGGT 1598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 TCAGACAATGTTTACTGTACACTTCTTGCTCAGAGCGCGGTTCATGGTGCAATGGCTGGT 1565
Query 1599 TACACTGGCTACACCAGTGGTCTTGTCAATGGAAGACAAACATACATCCCTTTCTACAGG 1658
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1566 TACACTGGCTACACCAGTGGTCTTGTCAATGGAAGACAAACATACATCCCTTACTACAGG 1625
Query 1659 ATAACAGAGACCCAGAACAATGTAGTGATTACGGATAGAATGTGGGCGAGGCTATTGTCT 1718
||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1626 ATAACAGAGACGCAGAACAATGTAGTAATTACGGATAGAATGTGGGCGAGGTTATTGTCT 1685
Query 1719 TCTACGAACCAGCCAAGTTTCTTGGGGCCTAAGGATACATCTGAAGAGAAGAAAGAGTTG 1778
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1686 TCTACGAACCAGCCAAGTTTCTTGGGGCCTAAGGATATACCTGAAGAGAAGAAAGAGTTG 1745
Query 1779 CCGGAAACACCGCTTCTTGACGACGGAGCTGTCGATATTCCTCCTGTGACTAAAGAGGTC 1838
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1746 CCGGAAACACCGCTTCTTGACGACGGAGCTGTCGATATTCCTCCTGTGACTAAAGAAGTC 1805
Query 1839 ACTAAGTGAAGAAGTTGCAGGGCATAATAATGGCATATGTATACTCAGAGGGTT-CTGTA 1897
|| ||||||||||||||||||||||||| | | ||||| | ||| ||| |
Sbjct 1806 ACCAAGTGAAGAAGTTGCAGGGCATAAT--T---A--------CTCAG-GCGTTTCTGCA 1851
Query 1898 ACCGATGCCGTTTCAGGCGAAAGTGAAATAATTGTTATTTTAACGAATTT-GCCCTTTTG 1956
| ||||||||||| |||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 1852 AACGATGCCGTTTTAGGCGAAAGTGAAATAATTGTTATCTTAAC-AATTTTGCCCTTTTG 1910
Query 1957 TGTATGTGCATACACAACACAAACACAAATTTTAGTTTTCTT-CTAGATGTTTAGTTTTG 2015
| | | |||||| | ||||||||||||| |||||||||||||||||
Sbjct 1911 T--A-----A-ACACAA-A----------TTTTAGTTTTCTTTCTAGATGTTTAGTTTTG 1951
Query 2016 TAATCCTTTTTGCATTTTCCACAACTGAATAAATGAATGAAGTAATAATCTTCGTTACTT 2075
||| ||| ||||||||||||||| |||||| |||||||||||| || |||||||||| |
Sbjct 1952 TAACCCTCTTTGCATTTTCCACATCTGAATGAATGAATGAAGT--TA-TCTTCGTTACGT 2008
Query 2076 TGATCCT 2082
|||||||
Sbjct 2009 TGATCCT 2015
> Ahg492186 jgi|Araly1|492186|fgenesh2_kg.7__1619__AT4G26270.1
Length=1799
Score = 893 bits (483), Expect = 0.0
Identities = 723/840 (86%), Gaps = 12/840 (1%)
Strand=Plus/Plus
Query 404 AAGTAACAAGCCGAAGATTGTCAACGGTCCTGGTGGTTATATTCTACAAGACGTTCCTCA 463
||||| ||| |||||||| |||| ||| || |||||||| ||||| |||||||||||||
Sbjct 230 AAGTAGCAAACCGAAGATCATCAATGGTTCTTGTGGTTATGTTCTAGAAGACGTTCCTCA 289
Query 464 TCTCAT-TGATTACCTTCCTGATCTTCCTACTTATCCAAATCCATTGCAAGACAATCCAG 522
|||| | ||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 290 TCTC-TCCGATTACCTTCCTGGTCTTCCTACTTATCCTAATCCATTGCAAGACAATCCAG 348
Query 523 CTTACTCAGTGGTTAAGCAATACTTTGTTCATGCTGATGATAGTGTCCCTGAGAAGGTTG 582
| ||||||||||| ||||||||||||||| |||||||||||||||| ||| | ||| | |
Sbjct 349 CATACTCAGTGGTGAAGCAATACTTTGTTGATGCTGATGATAGTGTTCCTCAAAAGATCG 408
Query 583 TTGTTCACAAGGATGGTCCAA-GAGGAGTCCATTTCAGGCGTGCTGGTCCACGTCAAAAG 641
||||||||||||||||||||| | ||| | ||||| || || || || ||||||||||||
Sbjct 409 TTGTTCACAAGGATGGTCCAAGGGGGA-TTCATTTTAGACGAGCAGGGCCACGTCAAAAG 467
Query 642 GTTTACTTTGAGTCTGACGAAGTGCATGCTTGTATAGTTACATGTGGAGGTCTCTGTCCC 701
|| ||||| || ||||| |||| ||||||||| |||||||| ||||||||||| |||||
Sbjct 468 GTATACTTCGAATCTGATGAAGGGCATGCTTGCATAGTTACCTGTGGAGGTCTTTGTCCT 527
Query 702 GGTCTCAATACCGTGATTAGAGAAGTTGTGAGCAGCT-TATCATACATGTATGGAGTAAA 760
|| || |||||||||||||||||| | |||||||| | |||| || ||||||||||| ||
Sbjct 528 GGCCTTAATACCGTGATTAGAGAAATAGTGAGCAG-TCTATCTTATATGTATGGAGTGAA 586
Query 761 GAGAATTCTTGGAATCGATGGTGGATACAGAGGATTTTACGCCAAGAATACTATCCCCTT 820
|||||| || ||||| ||||||||||| ||||| ||||| || ||||||||| || ||||
Sbjct 587 GAGAATACTGGGAATAGATGGTGGATATAGAGGCTTTTATGCTAAGAATACTGTCTCCTT 646
Query 821 AAACTCTAAAGTCGTGAATGATATCCATAAACGCGGAGGAACAATCATTGGGACCTCAAG 880
||||||||||||| |||||||||||||| || ||||| || ||| | |||||||| |
Sbjct 647 GGACTCTAAAGTCGTAAATGATATCCATAAGCGTGGAGGGACTATCCTCGGGACCTCGCG 706
Query 881 AGGTGGACATGATACCAAC-AAGATAGTTGATAGCATTCAAGATCGAGGAATCAATCAGG 939
|||||| || |||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 707 AGGTGGTCACGATACC-ACAAAGATAGTTGACAGCATTCAAGATCGAGGAATCAATCAGG 765
Query 940 TTTACATTATTGGAGGAGATGGAACCCAGCGAGGTGCTTCAGTAATATTTGAGGAAATTA 999
|||||||||| |||||||||||||| |||||||| || || || ||||||||||||||||
Sbjct 766 TTTACATTATAGGAGGAGATGGAACTCAGCGAGGAGCATCTGTTATATTTGAGGAAATTA 825
Query 1000 GAAGACGTCGACTAAAAGTTGCTGTGGTTGGAATTCCAAAAACTATTGATAATGATATTC 1059
|| ||||| | || |||||||| || |||||||| || ||||| || |||||||| || |
Sbjct 826 GACGACGTGGCCTGAAAGTTGCAGTTGTTGGAATCCCGAAAACAATCGATAATGACATAC 885
Query 1060 CGGTGATAGATAAATCTTTTGGGTTTGACACTGCTGTGGAGGAAGCTCAACGAGCGATTA 1119
| |||||||| |||||||||||||||||||| ||||| || || ||||||||||| ||||
Sbjct 886 CTGTGATAGACAAATCTTTTGGGTTTGACACAGCTGTAGAAGAGGCTCAACGAGCTATTA 945
Query 1120 ACGCAGCACATGTTGAAGCCGAGAGTA-ATGAGAATGGTATCGGTTTTGTCAAGCTTATG 1178
||||||||||||| ||||| ||||||| | ||||| ||||| || ||||||||||||||
Sbjct 946 ACGCAGCACATGTGGAAGCGGAGAGTATA-GAGAACGGTATTGGCGTTGTCAAGCTTATG 1004
Query 1179 GGTCGTTACAGCGGGTACATAGCGATGTATGCTACAT-TAGCCAGCAGAGATGTTGACTG 1237
|| || |||||||| | |||||||||||| || || | |||| ||||||||||| |||||
Sbjct 1005 GGCCGCTACAGCGGTTTCATAGCGATGTACGCGAC-TCTAGCAAGCAGAGATGTGGACTG 1063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78313543720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5