BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56650.1
Length=1607
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495757 jgi|Araly1|495757|fgenesh2_kg.8__1573__AT5G56650.1 2019 0.0
Ahg477533 jgi|Araly1|477533|fgenesh2_kg.3__234__AT3G02875.1 99.0 1e-19
> Ahg495757 jgi|Araly1|495757|fgenesh2_kg.8__1573__AT5G56650.1
Length=1509
Score = 2019 bits (1093), Expect = 0.0
Identities = 1397/1537 (91%), Gaps = 48/1537 (3%)
Strand=Plus/Plus
Query 1 ATGGCTCTAAACAACTTTTTGACTTTCCAACTACTCCTTCTTCTACTTCGTGTTTCATCG 60
|||||||||| ||||||||| |||||||||||||| | |||||||||||||||||||||
Sbjct 1 ATGGCTCTAAGCAACTTTTTAACTTTCCAACTACT-C--CTTCTACTTCGTGTTTCATCG 57
Query 61 GAATCTCCATGGATCGTCGCCGGAGATGTGTCTCGAATCCCGATCAATTTCCTCGAAT-T 119
|||||| |||||| ||||||| |||||||||| ||||| || || |||| |||| |
Sbjct 58 GAATCTTCATGGA---TCGCCGGCGATGTGTCTCAAATCCAGAAGAACCTCCTTGAATCT 114
Query 120 AGCAAAGAGCCCGGAGGTTTTCGATTCAATGGTGAGAATCAGAAGGAAAATCCACGAGAA 179
|| ||||| || || || ||||||| ||||||||||||||||||||||||||||||||
Sbjct 115 -GCGAAGAGTCCAGATGTCTTCGATTGGATGGTGAGAATCAGAAGGAAAATCCACGAGAA 173
Query 180 TCCTGAGCTGGGATACGAGGAATTCGAAACTAGTAAGTTCATTAGGTCGGAGCTTGACCT 239
||||||||| || ||||| |||||||| || || ||| ||||||||||||||||||||||
Sbjct 174 TCCTGAGCTTGGTTACGAAGAATTCGAGACCAGCAAGCTCATTAGGTCGGAGCTTGACCT 233
Query 240 TATCGGAGTTAAGTATAGGTTTCCGGTAGCTATCACCGGTATTATCGGATATATCGGTAC 299
| ||||| | |||||||||| ||| |||||||||||||||||||||||||||||||| ||
Sbjct 234 TCTCGGAATCAAGTATAGGTATCCAGTAGCTATCACCGGTATTATCGGATATATCGGCAC 293
Query 300 CGGAGAACCACCATTCGTCGCTCTAAGAGCAGATATGGATGCTTTGCCTATTCAGGAAGC 359
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 294 CGGAGAACCACCATTCGTCGCCCTGAGAGCTGATATGGATGCTTTGCCTATTCAGGAAGC 353
Query 360 TGTTGAGTGGGAGCACAAGAGCAAAAAT-CCTGGAAAAATGCATGCTTGTGGACATGATG 418
|||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct 354 TGTTGAGTGGGAGCACAAGAGC-AAAATCCCTGGTAAAATGCATGCTTGTGGACATGATG 412
Query 419 GTCATGTTGCTATGCTTCTTGGTGCTGCTAAGATACTTCAACAACATCGCCAAC-ATTTG 477
|||||||||||||||||||||||||||| |||||||||||| | ||||||| || |||||
Sbjct 413 GTCATGTTGCTATGCTTCTTGGTGCTGCAAAGATACTTCAAGAGCATCGCC-ACGATTTG 471
Query 478 CAGGGAACTGTGGTGCTTATCTTTCAGCCAGCTGAGGAAGGTTTGAGTGGAGCAAAGATG 537
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 472 CAGGGAACTGTGGTGCTTATCTTTCAGCCAGCTGAGGAAGGTTTGAGCGGAGCAAAGATG 531
Query 538 ATGAGAGAAGAAGGAGCGTTGAAGAACGTTGAAGCTATTTTTGGTATACATCTTTCCCCC 597
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 532 ATGAGAGAAGAAGGAGCTTTGAAGAACGTTGAAGCTATTTTTGGGATACATCTTTCCCCC 591
Query 598 CGGACTCCCTTTGGGAAAGCTGCTTCACTTGCAGGTTCATTTATGGCTGGAGCTGGAGCT 657
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
Sbjct 592 CGGACTCCCTTTGGGAAAGCCGCTTCACGTGCAGGTTCATTTATGGCTGGAGCTGGAG-T 650
Query 658 -TTCGAGGCTGTAATCACTGGGAAAGGAGGTCATGCTGCCATCCCTCAGCATACAATAGA 716
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 CTTCGAGGCTGTAATCACTGGGAAAGGAGGTCATGCTGCCATCCCTCAGCATACAATAGA 710
Query 717 TCCTGTTGTTGCAGCTTCAAGCATTGTCCTCAGTCTTCAAC-ACTTGGTTTCACGTGAAA 775
|||||||||||||||||||||||| ||| |||||||||||| || |||||||||||||||
Sbjct 711 TCCTGTTGTTGCAGCTTCAAGCATCGTCATCAGTCTTCAACAAC-TGGTTTCACGTGAAA 769
Query 776 CTGACCCTTCGGATTCAAAGGTGGTCACAGTTACTAAGGTTAATGGAGGCAACGCGTTCA 835
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 770 CTGACCCTTTGGATTCAAAGGTGGTCACAGTTTCTAAGGTTAATGGAGGCAACGCGTTCA 829
Query 836 ATGTCATCCCTGATTCAATCACCATAGGAGGAACTCTTCGAGCCTTTACCGGGTTTACTC 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 ATGTCATCCCTGATTCAATCACCATAGGAGGAACTCTTCGAGCCTTTACCGGGTTTACTC 889
Query 896 AGCTTCAGGAGAGAATCAAAGAGATTATTACAAAGCAAGCAGCCGTTCACCGATGCAATG 955
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 890 AGCTTCAGCAGAGAATCAAAGAGATTATTACCAAGCAAGCAGCCGTTCACCGATGCAACG 949
Query 956 CGTCCGTGAATCTAGCACCCAATGGTA-ACCAACCGATGCCACCAACTGTGAACAACATG 1014
|||||||||||||| ||||||| |||| | |||||||||||||||| ||||||||||||
Sbjct 950 CGTCCGTGAATCTAACACCCAAGGGTAGAG-AACCGATGCCACCAACAGTGAACAACATG 1008
Query 1015 GACTTATACAAGAAATTCAAGAAGGTGGTTAGGGATTTGTTGGGTCAAGAAGCTTTTGTG 1074
||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1009 GACTTGTACAAGCAATTCAAGAAGGTGGTTAGAGATTTGTTGGGTCAAGAAGCTTTTGTG 1068
Query 1075 GAAGCAGTGCCTGAAATGGGATCCGAGGACTTCTCATACTTTGCAGAAACAATCCCGGGC 1134
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 GAAGCAGCGCCTGAAATGGGATCCGAGGACTTCTCATACTTTGCAGAAACAATCCCGGGC 1128
Query 1135 CATTTCTCCCT-CTTGGGAATGCAAGATGAGACCCAAGG-TTATGCGTCGTCTCATTCAC 1192
||||||||||| || ||||||||||||||||||| || | |||||| |||||||||||||
Sbjct 1129 CATTTCTCCCTGCT-GGGAATGCAAGATGAGACC-AACGCTTATGCATCGTCTCATTCAC 1186
Query 1193 CACACTATAGAATCAACGAGGATGTTCTTCCTTACGGAGCTGCTATCCATGCAACGATGG 1252
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1187 CACTCTATAGAATCAACGAGGATGTGCTTCCTTACGGAGCTGCTATCCATGCAACGATGG 1246
Query 1253 CAGTACAGTACCTCAAAGATAAGGCTTCTAAAGGTTCTGTCTCAGGCTTTCATGACGAAC 1312
||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||
Sbjct 1247 CAGTACAGTACCTCAAAGAGAAAGCTTCTAAAGGTTCTGTCTCAGGCTCTCATGACGAAC 1306
Query 1313 TCTAATCCCTGTCAACCTTGGT---A--CAGTTTCCTCATCGGTCATTGGTTCGAATTCA 1367
| ||| || ||||||||||||| | ||| |||||||||||| |||| ||||||||||
Sbjct 1307 TATAAACCTTGTCAACCTTGGTTTTAGACAGGTTCCTCATCGGTTATTGATTCGAATTCA 1366
Query 1368 GAAGTACCAAATTTACACTCCATTGT-TGATA-GA-ATTCCATTTAAATGATGAAAAGCC 1424
||||||| || || ||||||||| | | ||| | || | | ||| || ||
Sbjct 1367 GAAGTACGAAGTTAACACTCCATAGAATAATATGTTAT-CG-TACAAA--ATCCCAA--- 1419
Query 1425 TTAATTCG-T-AGAA-C-AATTTCAATTGGGAAATTCTCAACTTTTATGATATGTTTGTG 1480
|||| | | | | || | |||||||||||| |||||| |||| ||||||||| |||||||
Sbjct 1420 TTAAAT-GATGAAAATCCAATTTCAATTGGCAAATTCACAACATTTATGATACGTTTGTG 1478
Query 1481 TAACTGTAACATACTGGCATAATCTTAGAACATGAAT 1517
|||| || | ||||| |||||||||||||||||
Sbjct 1479 TAACA-TA---T--TGGCAGAATCTTAGAACATGAAT 1509
> Ahg477533 jgi|Araly1|477533|fgenesh2_kg.3__234__AT3G02875.1
Length=1425
Score = 99.0 bits (53), Expect = 1e-19
Identities = 68/75 (91%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 390 TGGAAAAATGCATGCTTGTGGACATGATGGTCATGTTGCTATGCTTCTTGGTGCTGCTAA 449
|||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 410 TGGAAAGATGCATGCTTGTGGTCATGATACTCATGTTGCTATGCTTCTTGGTGCTGCTAA 469
Query 450 GATACTTCAACAACA 464
| | |||||| ||||
Sbjct 470 GCTTCTTCAA-AACA 483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60220677345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5