BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56840.1
Length=988
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950353 jgi|Araly1|950353|scaffold_802240.1 1184 0.0
> Ahg950353 jgi|Araly1|950353|scaffold_802240.1
Length=747
Score = 1184 bits (641), Expect = 0.0
Identities = 713/747 (95%), Gaps = 7/747 (1%)
Strand=Plus/Plus
Query 77 tctctttctcatTCATTGCAATGGGCAGAAGATGCTCACACTGTGGAAACGTAGGACATA 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTTTCTCATTCATTGCAATGGGCAGAAGATGCTCACACTGTGGAAACGTAGGACATA 60
Query 137 ACTCAAGAACATGTTCTTCTTACCAAACAAGAGTAGTTAGGCTCTTTGGTGTTCATCTAG 196
||||||||||||||||||||||||||||| ||||| |||| ||||| |||||||||||||
Sbjct 61 ACTCAAGAACATGTTCTTCTTACCAAACAGGAGTAATTAGACTCTTCGGTGTTCATCTAG 120
Query 197 ACACCACAAGCTCTTCTCCGCCGCCTCCTCCTCCTCCCTCGATTTTGGCCGCTGCAATAA 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACACCACAAGCTCTTCTCCGCCGCCTCCTCCTCCTCCCTCGATTTTGGCCGCTGCAATAA 180
Query 257 AGAAAAGTTTCAGCATGGATTGCTTGCCGGCATGTTCCTCCTCTTCCTCTTCCTTT-GCT 315
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 181 AGAAAAGCTTCAGCATGGATTGCTTGCCGGCATGTTCCTCCTCTTCCTCTTC-TTTCGCC 239
Query 316 GGTTATCTCTCCGATGGTCTCGCCCATAAAACACCTGACCGCAAAAAAGGGGTTCCATGG 375
|||||||||||||||||||||||||| ||| |||| || || ||||||||||||||||||
Sbjct 240 GGTTATCTCTCCGATGGTCTCGCCCACAAAGCACCCGATCGTAAAAAAGGGGTTCCATGG 299
Query 376 ACGGCGGAAGAGCACCGGACGTTTCTAATTGGATTAGAAAAGCTTGGAAAAGGAGATTGG 435
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 300 ACGGAGGAAGAGCACCGGACGTTTCTAATTGGATTAGAGAAGCTTGGAAAAGGAGATTGG 359
Query 436 AGAGGAATCTCTAGAAACTTCGTCGTCACAAAATCCCCGACACAAGTGGCAAGTCATGCT 495
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGAGGAATCTCTAGAAACTACGTCGTCACAAAATCCCCGACACAAGTGGCAAGTCATGCT 419
Query 496 CAAAAATACTTTCTCCGGCAAACTACCACTCTCCATCACAAGAGACGCCGCACCAGCCTC 555
||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 420 CAAAAGTACTTTCTCCGGCAAACCACCACTCGCCATCACAAGAGACGCCGCACCAGCCTC 479
Query 556 TTTGATATGGTTTCGGCCGGCAATGTTGAAGAAAATAGTACTACTAAGAGGATATGTAAT 615
||||||||||||||||||||||||||||||||||||||||| | |||||| || ||||||
Sbjct 480 TTTGATATGGTTTCGGCCGGCAATGTTGAAGAAAATAGTACAATTAAGAGTATGTGTAAT 539
Query 616 GATCATATTGGGTCGAGCTCAAAGGTTGTTTGGAAACAAGGATTACTCAATCCTCGTCTT 675
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 GATCATATTGGGTCGACCTCAAAGGTTGTTTGGAAACAAGGATTACTTAATCCTCGTCTA 599
Query 676 GGATATCCAGATCCGAAAGT-ATCAGTATCCGGCTCGGGTAACTCCGGTGG---ACTCGA 731
|||||||||||||||||||| | |||||||||| || |||||||||||||| ||||||
Sbjct 600 GGATATCCAGATCCGAAAGTGA-CAGTATCCGGGTCCGGTAACTCCGGTGGCGGACTCGA 658
Query 732 TCTTGAGCTGAAGCTTGCGTCCATTCAATCTCCTGAATCGAATATTAGACCTATTAGCGT 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCTTGAGCTGAAGCTTGCGTCCATTCAATCTCCTGAATCGAATATTAGACCTATTAGCGT 718
Query 792 TACGTGAATCTATATAACACGTTATGA 818
||||||||| |||||||||||||||||
Sbjct 719 TACGTGAATATATATAACACGTTATGA 745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36712369071
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5