BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56850.1
Length=1795
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917379 jgi|Araly1|917379|Al_scaffold_0008_2130 2302 0.0
> Ahg917379 jgi|Araly1|917379|Al_scaffold_0008_2130
Length=1659
Score = 2302 bits (1246), Expect = 0.0
Identities = 1542/1680 (92%), Gaps = 39/1680 (2%)
Strand=Plus/Plus
Query 37 ATGCCAGGAACAATACAAGTTTCAGTTCTTGGTCTTATCGATGTTCAGACATCTTCTCCA 96
||||||||||| ||||||||||||||||| |||||||| ||||||| ||| ||
Sbjct 1 ATGCCAGGAACTATACAAGTTTCAGTTCTGGGTCTTATTGATGTTC--ACA-------CA 51
Query 97 GGTTCTTCAAACACTTCCATTAAAGTTGCTATGGGAAAGCTAGAGTATCAAACTTCAGAT 156
| ||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||| ||
Sbjct 52 GCTTCTTCAAACACTTCCATTAAAGTTTCTATGGGGAAGCTAGAGTATCGAACTTCAAAT 111
Query 157 TCAGGAGACTACATTTTTCCAGTTACGAGGCTCCGAGAGAATTTGATTGTTACTCTGTTA 216
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 112 TCAGGAGACTACATTTTTCCAGTTACGAGGCTCCGAGAAAATTTGATTGTTACTCTGTTA 171
Query 217 GATGTTAATGGAAACCAAATATTACAGAAAGAGATAGAGACAAGAATGATAATAGAGAGT 276
||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 172 GATGTCAATGGAAACCAGATATTACACAAAGAGATAGAGACAAGAATGATAATAGAGAGT 231
Query 277 GGTTTCTTGGAAGAGAAACTTTCATTCAATGGCTATGGAAATGTTCAATTGAAAATGCAG 336
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 232 GGTTTCTTGGAAGAGAAACTTTCATTCAGTGGCTATGGAAATGTACAATTGAAAATGCAG 291
Query 337 TTTGTTCTCAGTGAGGAAGATCGAAATCGCATACGTTTCTTGAGACAATCTGCATTGCGA 396
||||||||||| || |||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 292 TTTGTTCTCAGCGAAGAAGATCGAAATCGCATACGTTTCCTGAGACAATCGGCATTGCGA 351
Query 397 AAGAAGCATGAGGAGCTTGTCAATGGCAGTTCTTTTACCAAATCTAAAAGCATTGCTTCA 456
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 352 AAGAAGCACGAGGAGCTTGTTAATGGCAGTTCTTTTACCAAATCTAAAAGCATTGCTTCA 411
Query 457 GATTTGTCATCTTTAAGTTCAATGCAATCTCGAGACATCGTGGCTGTTGCTAGT--T-CA 513
|||||||| |||||||||||||||||| | ||||| |||||||||||||||| | | ||
Sbjct 412 GATTTGTCTTCTTTAAGTTCAATGCAAACCCGAGAAATCGTGGCTGTTGCTACTAATCCA 471
Query 514 AAGACAAATCTTGGTCTGTCTCAAGAAACAAAGCTG-AAAACTAATGCAGATAGAGATCC 572
||||||||||||||||||||||||||||| ||| | |||| |||||||||||||||| |
Sbjct 472 AAGACAAATCTTGGTCTGTCTCAAGAAACCGAGC-GTAAAAATAATGCAGATAGAGATAC 530
Query 573 GGTTTCGTCAAATCTTATAATGTGGAAGCCTGAAGTAAAAGATTCAGTCGAGAAGACGAA 632
||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 531 GGTTTCGTCGAATCTTATAATGTGGAAGCCTGAAGTAAAAGATACAGTTGAGAAGACGAA 590
Query 633 TATTCAACTATCTTCTTCAGATGTTTCTTCAAGCAAGAAGGTTCCCGAGGTT-AAAAAAC 691
|||||||||||||| |||||||||||||||||||||||| |||| |||||| |||||||
Sbjct 591 AATTCAACTATCTTCATCAGATGTTTCTTCAAGCAAGAAGCTTCCGGAGGTTAAAAAAAC 650
Query 692 TCGAAAGTGTATCGTTAGTGAAGCAAGAAGATAAGGGTTTGAACAAACCAAGCAAGAAGC 751
| | |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 651 T-GCAAGTGTATTGTTAGTGAAGCAAGAAGATAAGGGTTTGAGCAAACCAAGCAAGAAGC 709
Query 752 TT-ATAGAGG--------CC-GAGAGTGTATTGTTAGTGAAGCAGGAAGATAAGGGATTG 801
|| || |||| || ||||| ||||||||||||||||| ||||||||||| |||
Sbjct 710 TTCAT-GAGGTTAAAACCCCGGAGAGAGTATTGTTAGTGAAGCAAGAAGATAAGGGTTTG 768
Query 802 AGCAAACCGAGAAAGAAGTTTACAGAGGCTAAAACCCCCGAGAGTGTATCGTTAGTGAAG 861
|||||||| | |||||| |||| |||||||||| | ||||| |||||||||||||||||
Sbjct 769 AGCAAACCAATCAAGAAGCTTACGGAGGCTAAAAACACCGAGTGTGTATCGTTAGTGAAG 828
Query 862 CAAGAAGAGACGGGTTTGAGCAAACCGGAAAGAAAGCCTAAACGGAAGTCAATGAGGCGG 921
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 829 CAAGAAGATACGGGTTTGAGCAAACCGGAAAGAAATCCTAAACGGAAGTCAATGAGGCGG 888
Query 922 AGTATGTCAGATTCAAATTTGAACAATGTGCGGAAAATGATTAGCAACTTTGAGGTCAAA 981
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 889 AGTATGTCAGACTCAAATTTGAACAATGTGCGGAAAATGATAAGCAACTTTGAGGTCAAA 948
Query 982 GTTACTCAGGATACAAAAATTAGGACAGCGAAGATTCAAACTGATTCTTGTAAAGATGCG 1041
|||||||||||||| |||||| ||||||||||||||||||||| ||||| ||||||||||
Sbjct 949 GTTACTCAGGATACCAAAATTCGGACAGCGAAGATTCAAACTGGTTCTTATAAAGATGCG 1008
Query 1042 GAGGAGAAAACTAAGGCGCAACCACCAGCGGAAAGCACTGTGAATCTAGAGAAATC-GGA 1100
||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||
Sbjct 1009 GAGGAGAAAACTAAGGCGCAACCACAAGCGGAAAGCACTGTGAATCTAGAGAAA-CTGGA 1067
Query 1101 AGAAAGGAAGATAATAAGCTTTAATAATATGGAGAAGTCAGTGTGTAGTGATAACACAGA 1160
|||||| ||||| ||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 1068 AGAAAGTAAGATCATAAGCTTTGAGAATATGGAGAAGTCAGTGTGTAGAGATAACACAGA 1127
Query 1161 TAGATGTGATGATTTAGTAATAGTTTCAAGAGATGAAAGGACAATGGATATAGAGGACAA 1220
|||||||||||||||||||||| ||||| ||||||||||| |||| | ||||||||| ||
Sbjct 1128 TAGATGTGATGATTTAGTAATATTTTCAGGAGATGAAAGGTCAATAGTTATAGAGGAGAA 1187
Query 1221 GAGTCTTGAGCATAGCACTAGAAGAAGTGACTTGTTAAGTACGCAAAGACGAAGTTTGGT 1280
||| ||||| |||| |||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1188 GAGACTTGAACATAACACTAGAAGAAGTGACTTTTTAAGTACGCAAAGACGAAGTTCGGT 1247
Query 1281 GGTAG-AAGTAAGGGATGATGAGAAGAAA-CAGAACAAATCTGTGTGGTTGAAAGATTCT 1338
||| | ||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 1248 GGT-GAAAGTAAGGGATGATGAGAAGAAACCA-AACAAATCTGTGTGTTTGAAAGATTCT 1305
Query 1339 CAACTTGAGAATGCACGAGGATCTCGTCTCTGGATATTTCCAGATGAGGCAAAAGATTTG 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 CAACTTGAGAATGCACGAGGATCTCGTCTCTGGATATTTCCAGATGAGGCAAAAGATTTG 1365
Query 1399 TGTTGCGAAACAGATTTAGGAACAAGACATTTGGATTTGGATTTAGCAGAAGCAAATTTG 1458
| |||||||||||||||||||||||||| | ||||||||||||||||||| || ||
Sbjct 1366 TCTTGCGAAACAGATTTAGGAACAAGAC----G--TTTGGATTTAGCAGAAGCATATATG 1419
Query 1459 TTACAAAAAAGGATAGACGAGTCTACTAGGGAAAACATCGGTGAGAGGGGAAGCCGTTGC 1518
||||| || |||||||| ||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1420 TTACAGAAGAGGATAGAAGAGTCTACTAGGGAAAACATCGGTGAGAGGGGATTCCGCTGC 1479
Query 1519 ATAAACATCGCGAAAATAAATAGCAACAACAAGTGGACGAACATTGAGCGATCAAAGAAA 1578
|||| |||||| |||||| |||| ||||||||||||| |||||| |||||||| ||||||
Sbjct 1480 ATAAGCATCGCAAAAATAGATAGTAACAACAAGTGGAAGAACATAGAGCGATCGAAGAAA 1539
Query 1579 CAAAAGTCTGAGAACTCTGCAGAGTCAGAAAGTTCAGGACGACCTGTTGGGCAAGTGATG 1638
|||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1540 CAAAAGTCGGAGAATTCTGCAGAGTCAGAAAGTTCAGGACGACCTGTTGGACAAGTGATG 1599
Query 1639 CGTGCGTTGATCGTGGTGGGTTTTGCAGGATTGGTGTTTTTGACACGACAATGAACTTAA 1698
|||||||||||||||| |||||||||||| || |||||||||||||||||| ||||||||
Sbjct 1600 CGTGCGTTGATCGTGGCGGGTTTTGCAGGGTTAGTGTTTTTGACACGACAAAGAACTTAA 1659
Score = 137 bits (74), Expect = 2e-31
Identities = 138/167 (83%), Gaps = 12/167 (7%)
Strand=Plus/Plus
Query 662 CAAGCAAGAAGGTTCCCGAGGTTAAAAAACTC-GAAAGTGTATCGTTAGTGAAGCAAGAA 720
||||||||||| ||| |||||| |||| | | || || |||| ||||||||||||||||
Sbjct 698 CAAGCAAGAAGCTTCATGAGGTT-AAAACCCCGGAGAGAGTATTGTTAGTGAAGCAAGAA 756
Query 721 GATAAGGGTTTGAACAAACCAAGCAAGAAGCTTATAGAGGC------C---GAGAGTGTA 771
||||||||||||| |||||||| ||||||||||| ||||| | ||| |||||
Sbjct 757 GATAAGGGTTTGAGCAAACCAATCAAGAAGCTTACGGAGGCTAAAAACACCGAGTGTGTA 816
Query 772 TTGTTAGTGAAGCAGGAAGATAAGGGATTGAGCAAACCGAGAAAGAA 818
| |||||||||||| ||||||| ||| |||||||||||| |||||||
Sbjct 817 TCGTTAGTGAAGCAAGAAGATACGGGTTTGAGCAAACCG-GAAAGAA 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67381643405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5