BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G56860.1 Length=1678 Score E Sequences producing significant alignments: (Bits) Value Ahg495776 jgi|Araly1|495776|fgenesh2_kg.8__1592__AT5G56860.1 2327 0.0 > Ahg495776 jgi|Araly1|495776|fgenesh2_kg.8__1592__AT5G56860.1 Length=1536 Score = 2327 bits (1260), Expect = 0.0 Identities = 1457/1549 (94%), Gaps = 25/1549 (2%) Strand=Plus/Plus Query 1 AAAAAGGATCAAACATAGTATAGCTTGGActctttttgccgtctatgatctctctcaatc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAAAAGGATCAAACATAGTATAGCTTGGACTCTTTTTGCCGTCTATGATCTCTCTCAATC 60 Query 61 tctcatcttagctttctttctctctctctttgtgtcttcatttgtttatctcatcaATGG 120 ||||||||||||| || | | |||||| |||||||||||||| |||||||||||||||| Sbjct 61 TCTCATCTTAGCTATC--T-T-TCTCTCGTTGTGTCTTCATTTCTTTATCTCATCAATGG 116 Query 121 ATTCAAATTTTCATTACTCGATAGATCTTAACGAAGATCAAAACCATCACGAACAACCCT 180 |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 117 ATTCGAATTTTCATTACTCTATAGATCTTAACGAAGATCAAAACCATCACGAACAGCCCT 176 Query 181 TTTTCTATCCTCTTGGATCCTCTTCCTCGCTtcatcatcatcatcatcatcatcatcatc 240 |||||||||||||||||||||| | ||| || || | || ||||||||||||||||| Sbjct 177 TTTTCTATCCTCTTGGATCCTC-T--TCG--TC-TC-T--TCTTCATCATCATCATCATC 227 Query 241 aAGTCCCTTCTAATTCTTCATCTTCTTCTTCGTCCATTTCATCGCTCTCCTCTTACCTCC 300 |||||||||||||||||||||||||||||||||||||||| || || ||||||||||||| Sbjct 228 AAGTCCCTTCTAATTCTTCATCTTCTTCTTCGTCCATTTCGTCTCTTTCCTCTTACCTCC 287 Query 301 CTTTCTTGATCAACTCTCAAGAAGATCAACATGTTGCCTACAACAACACTTATCACGCTG 360 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 288 CTTTCTTGATCAACTCTCAAGAAGATCAACATGTTGCCTACAACAATACTTATCATGCTG 347 Query 361 ATCATCTCCATCTTTCTCAACCCCTCAAGGCCAAGATGTTTGTGGCTAAC-GGTGGATCA 419 ||||||||||||||||||||||||||||||| ||||||||| ||||| || ||||||||| Sbjct 348 ATCATCTCCATCTTTCTCAACCCCTCAAGGCTAAGATGTTTCTGGCT-ACTGGTGGATCA 406 Query 420 TCAGCATGCGATCACATGGTGCCAAAGAAGGAGACAAGACTGAAACTAACGATAAGGAAA 479 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 407 TCATCATGCGATCACATGGTGCCAAAGAAGGAGACAAGACTGAAACTAACGATAAGGAAA 466 Query 480 AAAGATCACGAAGACCAACCCCATCCTCTTCATCAAAACCCGACAAAACCCGATTCAGAC 539 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 467 AAAGATCACGAAGACCAAACCCATCCTCTTCATCAAAACCCGACAAAACCCGATTCAGAC 526 Query 540 TCCGACAAGTGGTTGATGTCCCCAAAGATGCGGTTGATCAAGAAAACAATCACCAACAAT 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 527 TCCGACAAGTGGTTGATGTCCCCAAAGATGCGGTTGATCAAGAAAACAATCACCAACAAT 586 Query 600 AAACAGCTCATTGATCAGACTAATAATAATAATCATAAAGAAAGTGATCACTACCCTTTG 659 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 587 AAACAGCTCATTGATCAGAGTAATAATAATAATCATAAAGAAAGTGATCACTACCCTTTG 646 Query 660 AATCATAAGACTAATTTCGACGAGGATCACCATGAAGATCTTAATTTCAAGAACGTCTTG 719 ||||||||||||||||| ||||| |||||| |||||||||| ||||||||||| |||||| Sbjct 647 AATCATAAGACTAATTTTGACGAAGATCACGATGAAGATCTCAATTTCAAGAAAGTCTTG 706 Query 720 ACCAGGAAGACCACGGCCGCGACCACCGAGAATCGCTACAATACAATCAACGAGAACGGT 779 ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 707 ACCAGGACGACCACGGCCGCGACCACCGAAAATCGCTACAATACAATCAACGAGAATGGT 766 Query 780 TATAGTAATAACAATGGCGTGATTAGGGTTTGTTCGGATTGTAACACCACCAAGACTCCT 839 ||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 767 TATGGTAATAACAATGGCGTGATTAGGGTTTGCTCGGATTGCAACACCACCAAGACTCCT 826 Query 840 CTTTGGCGAAGTGGACCTCGAGGTCCCAAGTCTCTTTGTAACGCATGTGGTATACGGCAA 899 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 827 CTTTGGCGAAGTGGACCTCGAGGTCCCAAGTCTCTTTGTAACGCATGTGGCATAAGGCAA 886 Query 900 AGAAAGGCAAGGCGAGCCGCTATGGCCGCGGCCGCTGCAGCCGGCGACCAAGAGGTGGCG 959 |||||||| |||||||||||||||||||||||||| || ||||||||||||||||||| | Sbjct 887 AGAAAGGCGAGGCGAGCCGCTATGGCCGCGGCCGCAGCTGCCGGCGACCAAGAGGTGGTG 946 Query 960 GTAGCGCCCCGAGT-GCAACAATTACCGCTGAAAAAGAAGTTGCAAAATaaaaaaaaGAG 1018 |||||| ||||| | || |||||||| ||||||||||||||||||||| || |||||||| Sbjct 947 GTAGCGTCCCGA-TCGCCACAATTACTGCTGAAAAAGAAGTTGCAAAACAAGAAAAAGAG 1005 Query 1019 ATCAAACGGAGGGGAAAAATACAATCACTCTCCTCCAATGGTGGCCAAGGCCAAAAAGTG 1078 |||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| Sbjct 1006 ATCAAACGGAGGGGAAAAATACAATCTCTCTCCTCCGGTGGTGGCCAAGGCGAAAAAGTG 1065 Query 1079 CAAGATCAAAGAGGAAGAGGAGAAGGAAATGGAAGCGGAAACG--G-TTGCCGGAGATTC 1135 |||||||||||||||||| ||| ||| ||||| ||||||||| | || || | |||| Sbjct 1066 CAAGATCAAAGAGGAAGATGAGGTGGACATGGAGGCGGAAACGACGATTTCCAAAAATTC 1125 Query 1136 AGAGATCAGCAAATCTACAACTTCTTCTAATTCTTCGATTTCGTCAAACAAATTTTGCTT 1195 ||||||||||||||| ||||| |||||||||||||| |||||||| |||||| ||||||| Sbjct 1126 AGAGATCAGCAAATCAACAACCTCTTCTAATTCTTCAATTTCGTCGAACAAACTTTGCTT 1185 Query 1196 CGATGATTTGACAATAATGTTGAGCAAAAGCTCAGCTTATCAACAAGTGTTCCCACAAGA 1255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1186 CGATGATTTGACAATAATGTTGAGCAAAAGCTCAGCTTATCAACAAGTGTTCCCACAAGA 1245 Query 1256 TGAGAAGGAGGCTGCTGTTTTGCTCATGGCTCTGTCGTATGGAATGGTTCACGGTTGATC 1315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1246 TGAGAAGGAGGCTGCTGTTTTGCTCATGGCTCTGTCGTATGGAATGGTTCACGGTTGATC 1305 Query 1316 AGATCATCACAATATCCTCATTACAA-AAAGGTTTATTTTAATAGTAATATATAGATTAT 1374 |||| |||||| |||||| ||||||| ||||||||||||| ||||| ||||||||| ||| Sbjct 1306 AGATAATCACATTATCCTGATTACAAGAAAGGTTTATTTTTATAGTTATATATAGACTAT 1365 Query 1375 AGTAATCATAATAATGATTGATTGTTAAATCTTGGAGTGATTAGTTTAGTTTTTGCAGTT 1434 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1366 AGTAATCATAATAATGATTGATTGTTAAATCTTGGAGTGATTAATTTAGTTTTTGCAGTT 1425 Query 1435 GGTCTAATATCAGGAGTCA-AAA--CATTTT-ATAATAAGAGTGTGTGAGAGTTTAATAT 1490 ||||||||||||||||||| ||| |||||| ||||||||| |||||||||||||||||| Sbjct 1426 GGTCTAATATCAGGAGTCAGAAAAACATTTTTATAATAAGATTGTGTGAGAGTTTAATAT 1485 Query 1491 GATAATTAATAGCTCTATATATGTTTATGGAGAttttggttttgagttt 1539 |||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1486 GATAATTAATAGTTCTATATATGTTTATGGAGATTTTGGTTTAGAGTTT 1534 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62925084740 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5