BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G56900.2 Length=2119 Score E Sequences producing significant alignments: (Bits) Value Ahg495780 jgi|Araly1|495780|fgenesh2_kg.8__1596__AT5G56900.2 3114 0.0 > Ahg495780 jgi|Araly1|495780|fgenesh2_kg.8__1596__AT5G56900.2 Length=2113 Score = 3114 bits (1686), Expect = 0.0 Identities = 2009/2152 (93%), Gaps = 73/2152 (3%) Strand=Plus/Plus Query 1 ATGGCGCCCAGAATTTTACTCTGTGGAGATCCTCTTGGACGTCTCAATCAGCTCTTCAAG 60 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGCCCAGAATTTTGCTCTGCGGAGATCCTCTTGGACGTCTCAATCAGCTCTTCAAG 60 Query 61 CGTGTCCAATCGGTTAGCAAATCTGCTGGTCCCTTTGATGCTCTGATTTGCGTCGGACAG 120 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 61 CGTGTCCAATCGGTTAGCAAATCTGCTGGTCCATTTGATGCTCTGATTTGCGTCGGCCAG 120 Query 121 TTTTTTCCCGATTCTCCAGAAATTCTAGATGAGTTTTTGGATTACGTCGAAGGTCGAGCT 180 ||||||||||||||||| ||| | ||||| |||||| |||||||||| ||||||||| || Sbjct 121 TTTTTTCCCGATTCTCCGGAACTCCTAGACGAGTTTCTGGATTACGTTGAAGGTCGAACT 180 Query 181 CAAGTTCCGATTCCTACTTACTTCACCGGAGACTATGGTGTCGTCGCACCCAAAATCTTA 240 ||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||| || Sbjct 181 CAAGTTCCGATTCCTACTTACTTCACCGGCGACTATGGCGTCGTTGCCCCCAAAATCCTA 240 Query 241 TCGACGACTTCGAAGAAAGCTGAGAATCAAGGGTTTAAGATGGATGGACTCGAAGTTTGC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCGACGACTTCGAAGAAAGCTGAGAATCAAGGGTTTAAGATGGATGGACTCGAAGTTTGC 300 Query 301 CACAATTTGTTTTGGTTAAGAGGAAGTGGGAAGTTCAGTCTCCATGGTTTGTCTGTTGCT 360 ||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||| Sbjct 301 CACAATTTGTTTTGGTTAAGAGGAAGTGGGAAGTTCACTCTTCAAGGTTTGTCTGTTGCT 360 Query 361 TACTTATCTGGTAGACAATCATCTGAGAGTCAATTTGGGAAATATAGTCAAGATGATGTT 420 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 361 TACTTATCTGGTAGACAATCATCTGATAGTCAATTTGGGAAATATAGTCAAGATGATGTT 420 Query 421 GATGCTCTTCGTGCACTTGCTGAGGAACCTGGAGGAGTTGATTTG---------T-T-C- 468 |||||||||||||||||||||||||||||||||| ||||||||| | | | Sbjct 421 GATGCTCTTCGTGCACTTGCTGAGGAACCTGGAGTTGTTGATTTGTTCTTAACATATCCT 480 Query 469 -------T-TA-ACTAATGAATGGCCTGCGGGAGTCACAAACAGAGCTGCGGTTTCTGAT 519 | || ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 481 TTTTTTTTGTATACTAATGAATGGCCTGCGGGAGTTACAAACAGAGCTGCGGTTTCTGAT 540 Query 520 ATTCCTGTTGGAATTTCTGATTCCTCTTGTAGTGATTCCACTGTTTCTGAGTTGGTAATG 579 |||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 541 ATTCCTGTAGGAGTTTCTGATTCCTCTTGTAGTGATTCCACTGTTTCTGAATTGGTAATG 600 Query 580 GAAGTTAAACCTCGCTATCACATTGCAGGTTCTATGGGGGTATTTTATGCCCGTGAACCT 639 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GAAGTTAAACCTCGCTATCACATTGCAGGTTCTATGGGGGTATTTTATGCCCGTGAACCT 660 Query 640 TACCTCAACGCTGAATCTACTCATGTAACTCGCTTTATTGGTCTTGCTCAAGTTGGAAAT 699 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 TACCTCAACGTTGAATCTACTCATGTAACTCGCTTTATTGGTCTTGCTCAAGTTGGAAAT 720 Query 700 AAAAACAAACAGAAATTTCTTCATGCGCTTTCTCCTACACCAACATCTACCATGTCACCA 759 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 AAAAACAAACAGAAATTTCTTCATGCGCTTTCTCCTACACCAACATCTACCATGTCACCA 780 Query 760 GCAGAGCTTAGTGCAAAGCCTCCAAAAACTACGCTATGGCCTTATAATTTACAAGATG-G 818 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | Sbjct 781 GCAGAGCTTAGTGCAAAGCCTCCAAAAACTACACTATGGCCTTATAATTTACAAGA-GAG 839 Query 819 AGCTGCTGAATCGAAGAAGAGGCCAAACGATAGTGACTCTGATTCACAGTATTGGAGGTA 878 ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 840 TGCTGCTGAATCGAAGAAGAGGCCAAACGACAGTGAATCTGATTCACAGTATTGGAGGTA 899 Query 879 TGATGTCCCAAAGCGGCAAAAGAGTGGATCTCAAGGGGAAAAGCTCTGTTTCAAATTTGT 938 ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 900 TGATGTCTCAAAGCGGCAAAAGAATGGATCTCAAGGGGAAAAGCTCTGTTTCAAATTTGT 959 Query 939 CTGCTCAGGTTCCTGTCCTCGTGGTGAAGATTGCCATTTCCAACACAACGCTGAAGCAAG 998 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 960 CTGCTCAGGTTCCTGTCCTCGGGGTGAAGATTGCCATTTCCAACACAACGCTGAAGCAAG 1019 Query 999 AGAACAGTGTCGTAGAGGTGTTTGTCTTGATCTTATCATCAAAGGTAAGTGTGAAAAAGG 1058 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 AGAACAGTGTCGTAGAGGTGTTTGTCTTGATCTTATCATCAAAGGTAAGTGTGAAAAAGG 1079 Query 1059 CCCAGAGTGCAGCTACAAGCATGAGTTTCAAGATGAAAGTAGCATACAAAGGAAGCCCAG 1118 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1080 CCCAGAGTGCAGCTACAAGCATGAGTTTCAAGATGAAAGTAGCATACAAAGAAAGCCCAG 1139 Query 1119 ATCTGAGAATGCTAACAGGTCAAAAGAATGCTGGTTTTGTCTATCAAGCCCGAGTGTGGA 1178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 ATCTGAGAATGCTAACAGGTCAAAAGAATGCTGGTTTTGTCTATCAAGCCCGAGTGTGGA 1199 Query 1179 GTCACATTTAATCGTCAGTGTAGGGGAAAGTTTTTATTGTGCTCTACCCAAAGGTTCGCT 1238 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 1200 GTCACATTTAATCGTCAGTGTAGGGGAAAGTTTCTATTGTGCTCTACCCAAAGGTTCACT 1259 Query 1239 AGTCGAAGATCACATATTGATAATCCCAATCGAACATTTGCCCAATACTCTGGTTTTATC 1298 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1260 AGTCGAAGACCACATATTGATAATCCCAATCGAACATTTGCCCAATACTCTGGTTTTATC 1319 Query 1299 CCCTGAGGTTGAATCAGAGCTCAGTAGATACCAAAATGGTCTGAGAAATTGTTATAAGAG 1358 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1320 CCCTGAGGTTGAATCAGAGCTCAGTAGATACCAAAATGGTCTGAGAAATTGTTATAACAG 1379 Query 1359 CCAAGGAAATGATGCAGTTTTCTTTGAATTGGTCTCTAAACGTGTTTCTCATGCTAACCT 1418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1380 CCAAGGAAATGATGCAGTTTTCTTTGAATTGGTCTCTAAACGTGTTTCTCATGCTAACCT 1439 Query 1419 CCAAGTTGTTCCTGTTCCATCATCCAGAGCTCGTCTTCTTCCTAATATCTTTAGTCTGGC 1478 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1440 CCAAGTTGTTCCGGTTCCATCATCCAGAGCTCGTCTTCTTCCTAATATCTTTAGTCTGGC 1499 Query 1479 GGCTGAAAAACTGGGCTTTAAGCTTGTGACTAAAAAGTTTAATGATAGTACTGATGGCAG 1538 |||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||| Sbjct 1500 GGCTGAAAAACTGGGCTTTAAGCTTGTGACGAAAAAGTTTAGTGATAGTTCTGATGGCAG 1559 Query 1539 AAAATATCTGCAGAAGGAATATAATGCGGCATTGGGTCTCTTCTATGTGGAACTTCCTGA 1598 ||| ||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||| Sbjct 1560 AAAGTATCTGCAGAAGGAATACAATGCAGCTTTGGGGCTCTTCTATGTGGAACTTCCTGA 1619 Query 1599 TGGAACTGTGCTATCACACACCTTGGAAGAAAACGAAGTATTCCCTGCGCAGTTTGGACG 1658 |||||| ||| |||| |||||| ||||||| ||||||||||||||||| || |||||||| Sbjct 1620 TGGAACGGTGTTATCTCACACCCTGGAAGAGAACGAAGTATTCCCTGCACAATTTGGACG 1679 Query 1659 GGAGGTTCTAGCAGGGTTGCTAAAGATCCCAGATAGGGCCGATTGGAGAAACTGTAAAAT 1718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1680 GGAGGTTCTAGCAGGGTTGCTAAAGATCCCAGATAGGGCCGATTGGAGAAACTGTAAAAT 1739 Query 1719 TAGCCAAGAAGAGGAGGCAAAGCTGGCTGAAGATTTCAAGAAACAATTTCAAGAATTTGA 1778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1740 TAGCCAAGAAGAGGAGGCAAAGCTGGCTGAAGATTTCAAGAAACAATTTCAAGAATTTGA 1799 Query 1779 CCCTTGCCAATAACCTTACTGAACAAAAGATACGATTAGATGCTATCTTGTGGGCATCAA 1838 |||||||||||||||||||||||||||||||||||| | || |||||||||||| ||||| Sbjct 1800 CCCTTGCCAATAACCTTACTGAACAAAAGATACGATCATATACTATCTTGTGGGTATCAA 1859 Query 1839 TCAT--GCTAAACTCAGTCTCCAGTGCACTCAGGT---------CAGAAGCTGAATCATG 1887 |||| |||||||||||| |||||| ||||||||| | |||||||||||||| Sbjct 1860 TCATATGCTAAACTCAGTGTCCAGTACACTCAGGTATTGTGTTTCTGAAGCTGAATCATG 1919 Query 1888 CGA-AGCATCGTCGTTTAGAAATAGGTTTGTCAACAGTGTTCTTTGTTTGGTCAGTTAAA 1946 ||| | ||||||| |||||||||||||| || || || |||||||| Sbjct 1920 CGACA-CATCGTCCTTTAGAAATAGGTT---CA----TG------GT-----CAGTTAAA 1960 Query 1947 AGCTAACAGTCTTCCATCAGTTTCCTTACTATTTTACTGGTTAGTTGTTACCTATCTTGT 2006 |||||||||||||||||| ||| |||||||||||| | | | | || | Sbjct 1961 AGCTAACAGTCTTCCATCTGTTACCTTACTATTTT--T------------C-T-T-TT-T 2002 Query 2007 TCTTCTATTAAACAttttttttGATATATTATTGTTTGTTGAGATGTAAGAGAGTGATCA 2066 |||||| |||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 2003 -CTTCTAGTAAACACTTGCTTTGATATATTATTGTTTGTTGAGATGTAAGAGAGTGATCA 2061 Query 2067 TCACAGAAACACACAACAGTCATGGTAGAATTTGCTTCACCTGTTTTCACCT 2118 ||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2062 TCACAGAAACACAAAACAGTCATGGTAGAATTTGCTTCACCTGTTTTCACCT 2113 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79722882785 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5