BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G57180.2 Length=1919 Score E Sequences producing significant alignments: (Bits) Value Ahg495815 jgi|Araly1|495815|fgenesh2_kg.8__1631__AT5G57180.2 1903 0.0 > Ahg495815 jgi|Araly1|495815|fgenesh2_kg.8__1631__AT5G57180.2 Length=1805 Score = 1903 bits (1030), Expect = 0.0 Identities = 1391/1552 (90%), Gaps = 77/1552 (5%) Strand=Plus/Plus Query 374 aaaTGTCGGCGTGTTTAAGCAGCGGAGGAGGAGGAGCAGCAGCATATAGTTTCGAGTTAG 433 |||||||||| ||| ||||||| || |||||||||||||||||||||||||||||||||| Sbjct 305 AAATGTCGGCTTGTATAAGCAGTGGCGGAGGAGGAGCAGCAGCATATAGTTTCGAGTTAG 364 Query 434 AAAAAGTGAAATCACCACCA-CCATCATCCTCAACAACAACAACAAGAGCTACTTCACCA 492 |||||||||||||||||||| | | | || ||||||||||||||||||||||||||||| Sbjct 365 AAAAAGTGAAATCACCACCATCAAGC-TCAACAACAACAACAACAAGAGCTACTTCACCA 423 Query 493 TCATCAACAATCTCCGAATCATCAAATTCACCACTCGCAATCTCAACGAGAAAGCCAAGA 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 424 TCATCAACAATCTCCGAATCATCAAATTCACCACTCGCAATCTCAACGAGAAAGCCAAGA 483 Query 553 ACACAACGCAAAAGACCAAACCAGACTTACAACGAAGCAGCTACTCTTCTCTCTACTGCT 612 || ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 484 ACTCAACGCAAAAGACCAAACCAGACTTACTACGAAGCAGCTACTCTTCTCTCAACTGCT 543 Query 613 TATCCCAACATCTTCTCCTCAAACTTGTCCTCTAAGCAAAAAACTCACTCTTCATCAAAC 672 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 544 TATCCAAACATCTTCTCCTCAAACTTGTCCTCTAAGCAAAAAACTCACTCTTC--C-AAT 600 Query 673 TCTCACTTCTACGGGCCATTGCTTAGTGACAACGACGACGCTTCTGATTTGCTTCTTCCT 732 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 601 TCTCACTTCTACGGGCCATTGCTTAGTGACAACGATGACGCTTCTGATTTGCTTCTTCCT 660 Query 733 TATGAATCAATCGAAGAACCTGATTTTCTGTTTCATCCAACGATTCAAACGAAAACAGAG 792 ||||||||||||||||| ||||||||||||||||| || || |||||| | ||| Sbjct 661 TATGAATCAATCGAAGAGCCTGATTTTCTGTTTCA-CC--CG------ACGAAATCGGAG 711 Query 793 TTTTTCTCAGACCAGAAGGAAGTTAACTCCGGTGGAGATTGCTACGGTGGTGAAATCGAA 852 |||||||| || || ||||||||||| |||||||||| | ||||||||||||| |||| Sbjct 712 TTTTTCTCCGAGCACAAGGAAGTTAATTCCGGTGGAG---GTTACGGTGGTGAAACCGAA 768 Query 853 AAGTTTGATTTCTCCGACGAATTCGATGCTGAATCGATTCTCGATGAGGATATTGAAGAA 912 ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 769 AAGTTTGATTTTTCCGACGAATTCGATGCTGAATCGATTCTTGATGAGGAGATTGAAGAA 828 Query 913 GGAATCGATAGTATAATGGGGACTGTGGTGGAATCGAATTCAAATTCGGGGATTTATGAA 972 || |||||||||||||||||||||||||| ||||||||||| |||| | |||| | Sbjct 829 GGTATCGATAGTATAATGGGGACTGTGGTCGAATCGAATTCGAATT--TGAATTTGGGGG 886 Query 973 TCTAGGGTTCCGGGAATGATCAATCGCGGTGGAAGAAGTTCTTCTAATCGGATTGGTAAA 1032 | || | || || | | || | || ||| || ||||| ||||||||| Sbjct 887 TTTATGAATCTAGG---G-T---TC-C---GG--GAA-----TC-AATCGAATTGGTAAA 927 Query 1033 CTAGAACAGATGATGATGATCAATTCATGGAATCGAAGCTCTAACGGATTCAATTTCCCG 1092 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 928 TTAGAACAGATGATGATGATCAATTCATGGAATCGAAGCTCTAATGGATTCAATTTTCCG 987 Query 1093 TTAGGGCTTGGATTACGAAGTGCTCTCAGAGAAAACGACGACACAAAATTGTGGAAG-AT 1151 ||||| ||||||||| |||| ||||||||||| ||||| ||| |||| |||||| || || Sbjct 988 TTAGGTCTTGGATTAAGAAGCGCTCTCAGAGAGAACGATGACCCAAACTTGTGG-AGAAT 1046 Query 1152 TCATACCGTTGATTTCGAACAGATCTCGCCGCGAATTCAAACTGTCAAAACCGAAACTGC 1211 ||| |||||||||||||||||||||||||||||||||| ||| |||| || ||||| || Sbjct 1047 TCAAACCGTTGATTTCGAACAGATCTCGCCGCGAATTCCAACCGTCACGACGGAAACCGC 1106 Query 1212 AATCTCCACCGTTGATGAGGAGAAATCCGACGGTAAGAAGGTGGTAATCTCTGGagagaa 1271 |||||||||||| || ||||| |||||||||||||| || ||||||||| |||||||| Sbjct 1107 AATCTCCACCGTCGACGAGGAAAAATCCGACGGTAA-AA--AGGTAATCTCCGGAGAGAA 1163 Query 1272 gagtaataagaagaagaagaagaagaaAATGACGGTGACGACG--A-C---ATTGATTAC 1325 ||||||||||||||||||||||||||||||||||| | || || | | ||||| ||| Sbjct 1164 GAGTAATAAGAAGAAGAAGAAGAAGAAAATGACGGCGGCGGCGACACCATTATTGACTAC 1223 Query 1326 GGAATCGAAAAGCTTGGAAGATACGGAGGAGA-CGAGTTTGAAGAGAACAGGTCCGTTGT 1384 |||||||||||||| ||||||||||||||| | ||||| ||||||||||||||| |||| Sbjct 1224 GGAATCGAAAAGCTCGGAAGATACGGAGGA-ATCGAGTCCGAAGAGAACAGGTCCATTGT 1282 Query 1385 TGAAGCTTGATTACGACGGCGTTTTGGAAGCTTGGTCTGATAAAACGTCGCCGTTTCCCG 1444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1283 TGAAGCTTGATTACGACGGCGTTTTGGAAGCTTGGTCTGATAAAACGTCGCCGTTTCCTG 1342 Query 1445 ACGAGATTCAGGGATCGGAAG---CT-G--TCGATGTCAATGCTAGATTAGCTCAGATTG 1498 | || |||| ||||||||||| || | |||||||||||||||||||||||||||||| Sbjct 1343 ATGACATTCTGGGATCGGAAGCTACTGGTATCGATGTCAATGCTAGATTAGCTCAGATTG 1402 Query 1499 ATTTGTTCGGAGACAGTGGAATGCGAGAAGCAAGTGTTTTGAGGTACAAAGAGAAACGTC 1558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1403 ATTTGTTCGGAGACAGTGGAATGCGAGAAGCAAGTGTTTTGAGGTACAAAGAGAAACGTC 1462 Query 1559 GAACTCGTCTTTTTTCGAAGAAAATTCGATACCAAGTTCGCAAACTCAATGCTGATCAAC 1618 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1463 GAACTCGTCTTTTTTCGAAGAAAATTCGATACCAAGTTCGCAAACTCAATGCTGATCAAC 1522 Query 1619 GTCCTCGAATGAAGGGACGATTCGTGAGAAGGCCCAATGAGAGCACTCCAAGTGGACAAA 1678 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 1523 GTCCTCGAATGAAGGGACGATTCGTGAGAAGACCCAATGAGAGTACTCCAAGTGGACAAA 1582 Query 1679 GATAACAAGGATAAAAGAGCCTAGATTTATCTTATCtttttttttttatcttttgtttat 1738 ||||||||||||||||||||||||||||||||| |||||| ||||| || |||||||||| Sbjct 1583 GATAACAAGGATAAAAGAGCCTAGATTTATCTTTTCTTTTCTTTTT-ATGTTTTGTTTAT 1641 Query 1739 tcc-ttgttttatttttgtttctaaaattttggcaccctcctttttt-gtttcttttaag 1796 ||| || ||||||||| |||||||||||||||||||| ||||||||| ||||||| ||| Sbjct 1642 TCCCTT-TTTTATTTT-GTTTCTAAAATTTTGGCACC-TCCTTTTTTTGTTTCTT--AAG 1696 Query 1797 ttatggtccctt---t---tg--gtttataattt-agattttttGATGAGGGGGAGATTT 1847 |||||||||||| | | ||||||||||| ||||||||| ||||||| |||||| Sbjct 1697 TTATGGTCCCTTGACTCCCTTTCGTTTATAATTTTAGATTTTTT-ATGAGGG--AGATTT 1753 Query 1848 GATTGAGAAAGTGAGGGATCAAAACTAATAAAAGTTTTTGTTATTAATAGAA 1899 |||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 1754 GATTGAGAAAATGAGGGATCAAAACAAATAAAAGTTTTTGTTATTAATAGAA 1805 Score = 350 bits (189), Expect = 3e-95 Identities = 268/302 (89%), Gaps = 21/302 (7%) Strand=Plus/Plus Query 1 TCACAAACCAATTAGCTTCTTTCTGTAA-AACCTCACTCGTTGGCCAATTCTTTTGGTTT 59 ||||||||||||| |||||| ||||||| ||| ||||| |||||||||||||||||| || Sbjct 1 TCACAAACCAATTGGCTTCTCTCTGTAAGAACTTCACTTGTTGGCCAATTCTTTTGG-TT 59 Query 60 TCATACACATAAATCTCAGATTCCAAATGGGTTTTCTTAGCTCTTTCTTTCAAATGATGA 119 ||||| ||| ||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 60 TCATAAACAAAAATCTCAGATTCCAAATGGGTTTTCTTAGCTCTTTCTTTC-AA--ATG- 115 Query 120 ACATTTGTTAGCAGAATCTTCCTCTTTCCCTAAAGTTTTGATC-tttttttCCCCCTTCA 178 | | ||| |||||||||||||||||||||||| | ||||||| | |||||| Sbjct 116 --A-----T----GAA-CTTCCTCTTTCCCTAAAGTTTTGACCTTTTTTTTTCTCCTTCA 163 Query 179 ATTTTGTATTTTCTCACCAAATaaaaaaaGGTTTCTTCAGTGGGTTTTAAGGGTTTATTA 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 164 ATTTTGTATTTTCTCACCAAATAAAAAAAGGTTTCTTCAGTGGGTTTTAAGGGTTTATTA 223 Query 239 TTATCTTAAAATTAAACACAATTCTTTAATCAAAAGGCAAA-AATCTTAATTTCATCACT 297 |||||||||||| ||||||||||| |||| ||||||| ||| ||||| |||||||||||| Sbjct 224 TTATCTTAAAATCAAACACAATTCCTTAACCAAAAGG-AAACAATCTCAATTTCATCACT 282 Query 298 CT 299 || Sbjct 283 CT 284 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72104833785 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5