BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G57220.1 Length=1723 Score E Sequences producing significant alignments: (Bits) Value Ahg332020 jgi|Araly1|332020|fgenesh1_pm.C_scaffold_8001363 2261 0.0 > Ahg332020 jgi|Araly1|332020|fgenesh1_pm.C_scaffold_8001363 Length=1494 Score = 2261 bits (1224), Expect = 0.0 Identities = 1407/1494 (94%), Gaps = 18/1494 (1%) Strand=Plus/Plus Query 72 ATGGATTACGTTTTGATTGTTTTGCCACTTGCATTGTTTCTCATAG----------C--- 118 |||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 ATGGATTACGTTTTGATTGTTTTGCCACTTGCATTGTTTCTCATAGCATACAAATTCTTA 60 Query 119 T--TACAAATTCTTATTCTCATCCAAAACGCAGGGCTTCAATCTCCCACCAGGACCAACT 176 | ||||||||||||| |||||||||||||||| | |||||||||||||| ||||||||| Sbjct 61 TACTACAAATTCTTATACTCATCCAAAACGCAGCGTTTCAATCTCCCACCTGGACCAACT 120 Query 177 CCGTTTCCTATCGTCGGCCATCTCCACCTAGTGAAACCACCGGTCCACCGTCTCTTCCGC 236 |||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||| Sbjct 121 CCGTTTCCTATCGTCGGCAACCTCCACCTCGTGAAACCACCGGTCCACCGTCTCTTCCGC 180 Query 237 CGCTTCGCTGAAAAATACGGCGACATCTTCTCCCTCCGTTACGGCTCTCGCCAAGTCGTA 296 |||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||| Sbjct 181 CGCTTCGCAGAAAAATATGGCGACATCTTCTCCCTTCGTTACGGCTCACGCCAAGTCGTC 240 Query 297 GTGATCTCTTCATTGCCTCTCGTAAGAGAATCCTTCACCGGTCAAAACGACGTCATTTTA 356 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 241 GTGATCTCTTCATTGCCTCTTGTAAGAGAATCCTTCACCGGTCAAAACGACGTCATCTTA 300 Query 357 ACAAACAGACCGCATTTTCTGACCGCGAAATACGTCGCTTACGATTACACCACTATAGGA 416 ||||||||||| |||||||||||||| |||||||||||||||||||||||||| || ||| Sbjct 301 ACAAACAGACCACATTTTCTGACCGCTAAATACGTCGCTTACGATTACACCACGATCGGA 360 Query 417 ACCGCCGCTTACGGTGACCATTGGCGTAATCTCCGCCGTATTTGCTCTCTAGAAATCCTC 476 ||||| ||||||||||||||||||||||||||||| |||||||||||||| || |||||| Sbjct 361 ACCGCAGCTTACGGTGACCATTGGCGTAATCTCCGACGTATTTGCTCTCTTGAGATCCTC 420 Query 477 TCCTCTAACCGTCTCACCGGATTCCTCTCCGTACGTAAAGACGAGATTCGTCGGCTGCTC 536 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 421 TCCTCTAACCGTCTCACCGGATTCCTCTCCGTACGTAAAGACGAGATTCGACGGTTGCTC 480 Query 537 ACAAAACTCTCACGTGAATATG---ACGGCCGTGTTGTCGAGCTTGAACCTCTTCTTGCA 593 || ||||||||||||||||||| |||||||||| || ||||||||||||||||||||| Sbjct 481 ACGAAACTCTCACGTGAATATGATCACGGCCGTGTCGTTGAGCTTGAACCTCTTCTTGCA 540 Query 594 GATTTGACGTTCAATAATATTGTCCGCATGGTCACAGGGAGACGCTACTACGGAGACCAG 653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GATTTGACGTTCAATAATATTGTCCGCATGGTCACAGGGAGACGCTACTACGGAGACCAG 600 Query 654 GTTCATAACAAGGAAGAAGCGAATCTATTCAAGAAACTAGTGACGGACATCAATGACAAC 713 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 601 GTTCATAACAAGGAAGAAGCGAATCTATTCAAGAAACTAGTGACGGAGATCAACGACAAC 660 Query 714 AGTGGTGCGAGCCATCCAGGAGATTATCTACCGATTCTTAAAGTGTTCGGACACGGCTAC 773 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 661 AGTGGTGCGAGCCATCCAGGAGATTATCTACCGATTCTTAAAGTGTTCGGACACAGCTAC 720 Query 774 GAGAAAAAAGTGAAAGCACTAGGCGAAGCCATGGACGCTTTCTTACAACGACTGCTCGAT 833 ||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||||| Sbjct 721 GAGAAGAAAGTGAAAGCACTCGGTGAAGCCATGGACGCTTTCTTACAGCGACTGCTCGAT 780 Query 834 GAATGTCGAATAAATGGAGAGAGCAACACAATGGTTAGTCACTTGTTGTCTTTACAACTA 893 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 GAATGTCGAAGAAATGGAGAGAGCAACACAATGGTTAGTCACTTGTTGTCTTTACAACTA 840 Query 894 GACCAACCCAAGTATTACAGTGACGTCATCATCAAAGGGCTCATGCTCAGTATGATGCTA 953 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 841 GACCAACCCAAGTATTACAGCGACGTCATCATCAAAGGCCTCATGCTCAGTATGATGCTA 900 Query 954 GCTGGAACGGATACTGCGGCCGTAACATTGGAATGGGCGATGGCAAATTTATTaaaaaaa 1013 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 GCGGGAACGGATACTGCGGCCGTAACATTGGAATGGGCGATGGCAAATTTATTAAAAAAC 960 Query 1014 CCTGAAGTGTTGAAAAAGGCAAAAGCTGAGATAGACGAGAAGATTGGAGAAGAGAGATTG 1073 |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 961 CCTGAAGTGTTGAAAAAGGCGAAAGCTGAGATAGACGAGAAGATTGGAGAAGAGCGATTG 1020 Query 1074 GTCGATGAACCTGACATTGCGAATCTACCTTATCTCCAAAACATAGTTTCCGAGACTTTT 1133 ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1021 GTCGATGAACCAGACATTGCGAATCTTCCTTATCTCCAAAACATTGTTTCCGAGACTTTT 1080 Query 1134 CGGTTGTGTCCAGCTGCACCACTTCTTGTTCCACGTTCTCCATCTGAAGATCTCAAGATT 1193 |||||||||||||| |||||||| ||||||||||||||||| ||||||||| |||||||| Sbjct 1081 CGGTTGTGTCCAGCCGCACCACTCCTTGTTCCACGTTCTCCTTCTGAAGATATCAAGATT 1140 Query 1194 GGTGGATACGACATACCACGTGGCACTATCGTGCTAGTGAACGCTTGGGCCATCCATAGA 1253 || ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 1141 GGCGGATACGACATACCACGTGGCACGATCGTGCTAGTGAACGCTTGGGGCATCCATAGA 1200 Query 1254 GACCCAAGACTTTGGGATGAGCCCGAGAAGTTTATGCCTGAGCGGTTCGAAGACCAAGAA 1313 ||||||| ||| |||||||||||||||| ||||||||| |||||||||||| || ||||| Sbjct 1201 GACCCAAAACTCTGGGATGAGCCCGAGAGGTTTATGCCAGAGCGGTTCGAAAACGAAGAA 1260 Query 1314 GCTTCAAAGAAACTAATGGTGTTTGGTAACGGACGAAGAACGTGTCCTGGTGCGACTTTA 1373 ||| ||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1261 GCTGCAAAGAAGTTGATGGTGTTTGGTAACGGACGAAGGACGTGTCCTGGTGCGACTTTA 1320 Query 1374 GGCCAGAGGATGGTATTGTTGGCTTTAGGTTCGTTGATTCAATGCTTTGACTGGGAAAAA 1433 || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1321 GGACAGAGGATGGTGTTGTTGGCTTTAGGTTCGTTGATTCAATGTTTTGACTGGGAAAAA 1380 Query 1434 GTCAACGGTGAAGATGTTGACATGACAGAGAATCCTGGAATGGCTATGCGTAAACTCGTG 1493 ||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1381 GTCAACGGTGAAGATATTGACATGACCGAGAATCCTGGAATGGCTATGCGTAAGCTCGTC 1440 Query 1494 CAATTACGAGCCGTTTGCCATAAACGTCCCATTATGACTAATCTCTTGGCTTAA 1547 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1441 CAATTACGAGCCGTTTGCCATAAACGTCCCATTATGACTAATCTCTTGGCTTAA 1494 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64639145765 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5