BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57270.1
Length=1907
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495825 jgi|Araly1|495825|fgenesh2_kg.8__1641__AT5G57270.1 2538 0.0
Ahg492232 jgi|Araly1|492232|fgenesh2_kg.7__1665__AT4G25870.1 887 0.0
> Ahg495825 jgi|Araly1|495825|fgenesh2_kg.8__1641__AT5G57270.1
Length=1781
Score = 2538 bits (1374), Expect = 0.0
Identities = 1659/1790 (93%), Gaps = 46/1790 (3%)
Strand=Plus/Plus
Query 37 TCGATTTCTTTATTTCTAAGCAAAGAGAGAGAAAACAAATCGAGGATCTGAATCGTCAAA 96
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCGATTTCTTTATTTCTAAGCAAAGAGAGAGAAAACAAATCGAGGATCTGAATCGTCAAA 60
Query 97 CACTTTACTTTGTTTTGTATGTTCTTCATT-ACAACACATTAATATACTTATTCCAAAAG 155
|| ||| |||||||||||||||||| | |||||||||||||| ||||| ||||||
Sbjct 61 AAC--TAC----TTTTGTATGTTCTTCATTGA-AACACATTAATATAATTATTGCAAAAG 113
Query 156 -C---AAACAAAATCCAACACTGTCTCGTTATCTTTCTCTTCACTCTTTGATATAAAGAA 211
| ||| |||||| ||||| |||| ||||||||||||| |||||||||| |||||||
Sbjct 114 CCAAAAAAAAAAATCTAACAC--TCTCATTATCTTTCTCTTGACTCTTTGATGTAAAGAA 171
Query 212 G--GATCATCAAAGCTTTCA-TTTTGAGATCTGGGC-TCAGACAAAGATTCttttttttt 267
| ||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||
Sbjct 172 GAAGATCATCAAAGCTTTCATTTTTGAGATCTGGGCTTCAGACAAAGATTC---TTTTTT 228
Query 268 tATTCTCTCCCCAGCTCCAAATTCTCA-GTGAAGC-ATAATTGCTCTCGTACGTGGGGGT 325
| ||||||||||||||||||||||||| || || | |||| |||||||||||| ||||
Sbjct 229 T-TTCTCTCCCCAGCTCCAAATTCTCAGGT-AA-CTGTAATAACTCTCGTACGTGCGGGT 285
Query 326 TTTGCTCAATGTAAAGAAGTTAAAGATTCAAAC-ttttttttCACAATGGGAGAGAATCT 384
||||||||||||||||||||||||||||||| | |||| | | || | |||| ||
Sbjct 286 TTTGCTCAATGTAAAGAAGTTAAAGATTCAACCATTTTATGGGAGAA--ACACAGAACCT 343
Query 385 GCATTTGTCTCCACGACACCGATCTTCTCTAAAGAAGCCATTGTTGATTGTTTTGTTAGT 444
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 GCATTTGTCTCCGCGACACCGATCTTCTCTAAAGAAGCCATTGTTGATTGTTTTGTTAGT 403
Query 445 CTGTATCACAAGTGTGCTTTTGGTGATCACTTACATGTATCCACAACACAACAACAGTAA 504
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 404 CTGTATCACAAGTGTGCTTTTGGTGATCACTTACATGTATCCACAGCACAATG---GTAA 460
Query 505 GAGCTCTGCTTGTGCGGGTTTGTCTAGTAGAGGCTGTCAAGCTGCGCTCTCTGGATGGCT 564
|||||||| ||||||||||||||||||||||||||| |||| ||||| || ||||||||
Sbjct 461 CAGCTCTGCGTGTGCGGGTTTGTCTAGTAGAGGCTGTGAAGCGGCGCTTTCGGGATGGCT 520
Query 565 TCCTGTTCATGTCAGGAAATTCACTGATGAAGAAGTAGCAGCTCGAGTTGTGATCAAAGA 624
|||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 521 TCCTGTTCATGTGAGGAAATTTACGGATGAAGAAGTAGCAGCTCGAGTTGTGATCAAAGA 580
Query 625 TATACTGAGACTACCTCCTGCTCTAACCGCTAAATCGAAAATCGCTTTTATGTTTTTGAC 684
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 581 TATTCTGAGACTACCTCCTGCTCTAACCGCTAAATCGAAAATCGCTTTTATGTTCTTGAC 640
Query 685 TCCTGGTACTTTGCCATTTGAGAAGCTTTGGGATAAGTTTTTCCAGGGTCAAGAAGGAAG 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 TCCTGGTACTTTGCCATTTGAGAAGCTTTGGGATAAGTTTTTCCAGGGTCAAGAAGGAAG 700
Query 745 ATTCTCTATTTACATCCACCCTTCCAGGTTACGACCAGTTCACATTAGCCGTCACTTTTC 804
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 701 ATTCTCTATTTACATCCACCCATCAAGGTTACGACCAGTTCACATTAGCCGTCACTTTTC 760
Query 805 AGACCGTGAAATTCATAGTGATCATGTCACTTGGGGAAGGATTTCTATGGTTGATGCTGA 864
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 761 AGACCGTGAGATTCACAGCGATCATGTCACTTGGGGAAGGATTTCTATGGTTGATGCCGA 820
Query 865 GAGACGGCTTCTAGCAAATGCTCTTGAAGATCCTGATAACCAGCACTTTGTTCTTCTTTC 924
|| ||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 821 GAAACGGCTTCTAGCAAACGCTCTTGAAGATCCTGACAACCAACACTTTGTTCTTCTTTC 880
Query 925 AGAAAGTTGTATACCGTTGCATACATTTGACTACACCTATCGATATTTGATGCACGCAAA 984
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 881 AGAAAGTTGTATACCGTTGCATACATTTGACTATACCTATCGATATTTGATGCACGCAAA 940
Query 985 TGTCAGCTTCATTGATAGTTTTGAGGATCTTGGTCCTCATGGGACTGGCAGACACATGGA 1044
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 941 TGTCAGCTTCATTGATAGTTTTGAGGATCTTGGTCCTCACGGGACTGGCAGACACATGGA 1000
Query 1045 TCACATGTTACCTGAGATCCCAAGGCAAGATTTCAGAAAGGGTGCACAGTGGTTCACAAT 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 TCACATGTTACCTGAGATCCCAAGGCAAGATTTCAGAAAGGGTGCACAGTGGTTCACAAT 1060
Query 1105 GAAGCGTCAACACGCTGTAATAGTGATGGCTGATGGTCTCTACTACTCGAAATTCCGGGA 1164
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 GAAGCGTCAGCACGCTGTAATAGTGATGGCTGATGGTCTCTACTACTCGAAATTCCGGGA 1120
Query 1165 GTATTGCAGACCTGGAGTAGAAGCAAACAAGAACTGCATCGCGGATGAACATTACCTGCC 1224
|||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1121 GTATTGCAGACCCGGGGTAGAAGCAAACAAGAACTGCATCGCAGATGAACATTACCTGCC 1180
Query 1225 AACATTCTTTCATATGCTTGATCCTGGAGGAATCTCGAACTGGTCAGTCACATATGTTGA 1284
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 AACATTCTTCCATATGCTTGATCCTGGAGGAATCTCGAACTGGTCAGTCACATATGTTGA 1240
Query 1285 TTGGTCTGAGCGTAGATGGCATCCAAAGACATATAGAGCACGCGATGTCTCACTCAAGCT 1344
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1241 TTGGTCTGAGCGTAGATGGCATCCAAAGACATACAGAGCACGCGATGTCTCACTCAAGCT 1300
Query 1345 CTTGAAAAATATCACGTCTGACGACATGAGTGTACATGTAACAAGCGTTGGCAAGCGCGG 1404
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1301 CTTGAAAAATATCACGTCCGATGACATGAGTGTACATGTAACAAGCGTTGGCAAGCGCGG 1360
Query 1405 AGAAGAGCTGCGTTGGCCTTGTACATGGAAGGGAATTAGACGACCATGTTATCTATTTGC 1464
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1361 AGAAGAGCTGCATTGGCCTTGTACATGGAAGGGAATTAGACGTCCATGTTATCTATTCGC 1420
Query 1465 AAGGAAGCTTCACTCAGATGCTCTTTACAAACTGGTCAGACTCTTTCCAAATTACACAAG 1524
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1421 AAGGAAGTTTCACTCAGATGCTCTTTACAAACTGGTCAGACTCTTTCCAAACTACACGAG 1480
Query 1525 CACAGTGGTCTAAGCCAGAGACAAATTCTTGAAACTAAACCATACGATTCTTGAAACCGG 1584
| ||||||||| ||||||| ||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1481 CTCAGTGGTCTGAGCCAGAAACAAATTCTTGAAACCAAACCATACAATTCTTGAAACCGG 1540
Query 1585 AACTAAACACTTCCAGATATGC-CGAGATTGGATCGCA-ATTTACTGTAAATTTTTGCTT 1642
||| ||||||||||| |||| | ||||||||||||||| ||| ||||||||||| |||||
Sbjct 1541 AACAAAACACTTCCACATAT-CTCGAGATTGGATCGCAGATT-ACTGTAAATTTCTGCTT 1598
Query 1643 TCTCTTGCTGAGATTTAGTGTCTCTTTA------CATGGTACTCTACTTTTATTAAGGTT 1696
|||||||||| | ||||||| ||||||| |||| |||||| ||||||||||||||
Sbjct 1599 TCTCTTGCTGGGGTTTAGTG-CTCTTTAATGGGACATGTTACTCTGCTTTTATTAAGGTT 1657
Query 1697 TAGTATAAGAAGAAAGTTAGAAGCAGAAATTTTTTGGTC-AAGGAGAGATTTGGTTATCG 1755
||||||||||| ||| ||||||||||| ||||| | || |||||||| ||||||| | |
Sbjct 1658 TAGTATAAGAACAAAATTAGAAGCAGAGGTTTTT-G-TCTAAGGAGAGTTTTGGTTTTTG 1715
Query 1756 TGATTTTAGCCATTGTTCGGTTAGTGTTAAGCGGTATATGTTGTTGTAAA 1805
||||||||||||||||| |||||||||||| |||| ||||||||||||||
Sbjct 1716 TGATTTTAGCCATTGTTTGGTTAGTGTTAACCGGTGTATGTTGTTGTAAA 1765
> Ahg492232 jgi|Araly1|492232|fgenesh2_kg.7__1665__AT4G25870.1
Length=1492
Score = 887 bits (480), Expect = 0.0
Identities = 885/1072 (83%), Gaps = 61/1072 (6%)
Strand=Plus/Plus
Query 533 AGAGGCTGTC-AAGCTGCGCTCTCTGGA-TGGCTTCCTGTTCATGTCAGGAAATTCACTG 590
|||||||| | | | ||| |||||| | ||||| |||||||||||||||||||||||||
Sbjct 353 AGAGGCTG-CGAGGATGCTCTCTCT-AAGTGGCTACCTGTTCATGTCAGGAAATTCACTG 410
Query 591 ATGAAGAAG-TAGCAGCTCGAGTTGTGATCAAAGATATACTGAG-ACTACCT-CCTGCTC 647
||| || || |||||||||||| ||| || ||| ||||| || || ||| ||| ||
Sbjct 411 ATG-AGGAGATAGCAGCTCGAGCAGTGGCCAGAGACATACTAAGAAC-GCCTCCCT--TC 466
Query 648 -TAACCGCTAAA-TCGAAAATCGCTTT-TATGTTTTTGACTCCTGGTACTTTGCCATTTG 704
|||||| ||| || ||||||||||| | |||| ||||||||||||||||||||||| |
Sbjct 467 ATAACCG-AAAACTCCAAAATCGCTTTCT-TGTTCTTGACTCCTGGTACTTTGCCATTCG 524
Query 705 AGAAGCTTTGGGAT-AAGTTTTTCCAGGGTCAAGAA-GGAAGATTCTCTATTTACATCCA 762
||||||| |||||| || |||||| ||||||| ||| ||||| ||||| ||||| |||||
Sbjct 525 AGAAGCTATGGGATGAA-TTTTTCAAGGGTCATGAAGGGAAG-TTCTCGATTTATATCCA 582
Query 763 CCCTTC-CAGGTTACGACCAGTTCACATTAGCCGTCACTTTTCAGACCGTGAAATTCATA 821
||| || ||| ||||||||||||||| |||||||||||||| || ||||| || || |
Sbjct 583 CCCGTCAAAGG-AACGACCAGTTCACATCAGCCGTCACTTTTCTGATCGTGAGATCCACA 641
Query 822 GTGATCATGTCACTTGGGGAAGGATTTCTATGGTTGATGCTGAGA-GACGGCTT-CTAGC 879
||||| | |||||||||||||||||||||||||||||||| |||| | ||| || || |
Sbjct 642 GTGATGAGGTCACTTGGGGAAGGATTTCTATGGTTGATGCCGAGAAG-CGG-TTACTGGT 699
Query 880 AAATGCTCTTGAAGATCCTGATAACCAGCACTTTGTTCTTCTTTCAGAAAGTTGTATACC 939
| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||
Sbjct 700 TAGCGCTCTTGAAGATCCTGACAACCAACACTTTGTTCTTCTTTCAGAGAGTTGTATTCC 759
Query 940 GTTGCATACATTTGACTACACCTATCGATATTTGATGCACGCAAATGTCAGCTTCATTGA 999
|||||||| ||||||||||| ||| |||||||| || || | | ||| |||||||||||
Sbjct 760 ATTGCATACTTTTGACTACACTTATAGATATTTGCTGTACTCCAGTGTTAGCTTCATTGA 819
Query 1000 TAGTTTTG-AGGATCTTGGTCCTCATGGGACTGGCAGACACATGGATCACATGTTACCTG 1058
||||||| || ||| |||||| |||||||| || ||||| ||||| |||||| |||| |
Sbjct 820 GAGTTTTGTAG-ATCCTGGTCCACATGGGACCGGTAGACATATGGAACACATGCTACCAG 878
Query 1059 AGATC-CCAAGGCAAGATTTCAGAAAGGGTGCACAGTGGTTCACAATGAAGCGTCAACAC 1117
| ||| ||| || ||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 879 AAATCGCCAGGG-AAGATTTTAGAAAGGGTGCTCAGTGGTTCACAATGAAGCGACAACAC 937
Query 1118 GCTG-TAATAGTGATGGCTGATGGTCTCTACTACTCGAAATTCCGGGAGTATTGCAGACC 1176
|| | | ||||||||||| |||||||| |||||||| |||||||| |||||||| ||||
Sbjct 938 GC-GATTATAGTGATGGCCGATGGTCTTTACTACTCAAAATTCCGCGAGTATTGTGGACC 996
Query 1177 TGGAGTAGAAGCAAACAAGAACTGCATCGCGGATGAACATTACCTGCCAACATTCTTTCA 1236
|||| |||| || ||||||||||||| | |||||||||||| |||||||||| |||||
Sbjct 997 TGGAATAGAGGCCGACAAGAACTGCATTTCTGATGAACATTACTTGCCAACATT-TTTCA 1055
Query 1237 -TATGCTTGATCC--TGGAGGAATCTCGAACTGGTCAGTCACATATGTTGATTGGTCTGA 1293
|||| ||||||| ||| ||| |||| ||||||||||| || |||||||||||||||||
Sbjct 1056 ATATGATTGATCCCATGG-GGA-TCTCAAACTGGTCAGTGACGTATGTTGATTGGTCTGA 1113
Query 1294 GCGTAGATGGCATCCAAAGACATATAGAGCAC--GCGATGTCTCACTCA-AGCTCTTGAA 1350
|| || ||||||||||||||||| ||| | | ||| | ||||| | || || ||||
Sbjct 1114 ACGAAGGTGGCATCCAAAGACATACGGAGGAAATGAGAT-T-TCACT-AGAGTTCATGAA 1170
Query 1351 AAATATCACGTCTGACGACATGAGTGTACATGTAACAAGCGTTGGCAAGCGCGGAGAAGA 1410
|||| ||||||| || |||||||||||||| || || || || ||||||| ||||| ||
Sbjct 1171 AAATGTCACGTCCGAGGACATGAGTGTACACGTCACCAGTGTGGGCAAGCATGGAGATGA 1230
Query 1411 GCTGCGTTGGCCTTGTACATGGAA-GGGAATTAGACGACCATGTTATCTATTTGCAAGGA 1469
||||| |||||||||||||||||| |||| ||| ||| || ||||||||||||||||| |
Sbjct 1231 GCTGCATTGGCCTTGTACATGGAACGGGA-TTACACGGCCTTGTTATCTATTTGCAAGAA 1289
Query 1470 AGCTTC-ACTCA-GATGCTCTTTACAAACTGGTCAGAC-TCTTTCCAAATTACACAAGCA 1526
|| ||| | || ||| |||| ||| | |||||| || |||| ||||| ||||||||||
Sbjct 1290 AG-TTCCA-TCCTGATACTCTCGACACATTGGTCA-ACCTCTTCCCAAACTACACAAGCA 1346
Query 1527 CAG-TGGTCTAAGCCAGAGACAAATTCTTGAAACTAAACCATACGATTCTTG 1577
||| || ||| || |||| | |||||||| | |||| | || |||||||
Sbjct 1347 CAGCTG-TCTGAG--AGAGG-A--TTCTTGAACCAAAAC-ACAC-ATTCTTG 1390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71647750845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5