BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57340.2
Length=1602
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950420 jgi|Araly1|950420|scaffold_802307.1 1186 0.0
> Ahg950420 jgi|Araly1|950420|scaffold_802307.1
Length=772
Score = 1186 bits (642), Expect = 0.0
Identities = 731/771 (95%), Gaps = 17/771 (2%)
Strand=Plus/Plus
Query 757 TATATGA--CTACGTTTCAGGCATGGGAACAAAGATCGTTGAGCGAATTACTACAAACCA 814
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 5 TATATGACTCTACGTTTCAGGCATGGGAACAAAGATCGTTGAGCGAATTACGACAAACCC 64
Query 815 AAGTGGCTTAAAGAGTGTTGATCATAGTGGGTTCATCAGATTTGTTGTTAATGGTCGACA 874
| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 65 ACGTGGATTAAAGAGTGTTGATCATAGTGGATTCATCAGATTTGTTGTTAATGGTCGACA 124
Query 875 AGAATCGTCAAAGGAGACGTTGACAGACGAG---GA--A-GAAGAAG--G-A---GTTTT 922
||||||||||| |||||||||||||||||| || | ||||||| | | |||||
Sbjct 125 GGAATCGTCAAAAGAGACGTTGACAGACGAGAAAGAGGAGGAAGAAGAAGAAGGGGTTTT 184
Query 923 TATTTTAAGGTCAATGGATAGGTTTCTTGAAAAGCAAAATGCTGAATCCATCAGACATAC 982
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 185 TATTTTAAGATCAATGGATAGGTTTCTTGAAAAACAAAATGCTGAATCCATCAGAAATAC 244
Query 983 AATGCAAGCCCAAGAAGATATTTTTAAGCAACAGGTACGAGAGCTACATAGAGTATATAA 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 AATGCAAGCCCAAGAAGATATTTTTAAGCAACAGGTACGAGAGCTACATAGAGTATATAA 304
Query 1043 TACACAGAAAATGATGATGACTCAACTCAAACATAGAAGCCAATATTGGACTGTTAACAA 1102
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 305 TACACAGAAAATGATGATGAATCAACTCAAACATAGAAGACAATATTGGACTGTTAACAA 364
Query 1103 CAAAGACCAACCCGGTTCAAGAGAGAGAACCGGAAGTTGTTCAGGCATAGACCTCGAAAA 1162
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 365 CAAAGACCAAACCGGTTCACGAGAGAGAACCGGAAGTTGTTCAGGCATAGACCTCGAAAA 424
Query 1163 TGTGGTTAGAGCAACACAAACGACGACGGATCATATCGAAGAGAGCGAACTCGAATTGAC 1222
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 425 TGTGGTTAGAGCAACACAAACGACGACGGATCATATTGAAGAGAGCGAACTCGAATTGAC 484
Query 1223 ATTGAGCATTGGATTGTCTTCTTCATCTACTACTATGACCACGACAACGAACAAGGACAT 1282
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 485 ACTGAGCATTGGATTGTCTTCTTCATCTACTACTATGACCACGACGACGAACAAGGACAT 544
Query 1283 GGACTACTCGTCAACAACGTCAATGAGATCATCATCGGataattgtaataatcagagcaa 1342
|||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 545 GGACTATTCATCAACAACGTCGATGAGATCATCATCGGATAATTGTAATAATCAGAGCAA 604
Query 1343 taataatctatataataacagcaataataaCCAAGAAAGTAGCGGACCAAACACGCCTAT 1402
|||||| || | |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 605 TAATAA--TA-ACAATAACAGTAATAATAACCAAGAAAGTAGCGGACCAAACACCCCTAT 661
Query 1403 GAGCAGCTCAAGTACGACGTCGTTGGATCGAGAGAAGAAGAGACCTCATTGGCTCTTTCA 1462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 GAGCAGCTCAAGTACGACGTCGTTGGATCGAGAGAAGAAGAGACCTCATTGGCTCTTTCA 721
Query 1463 AGGACTTAGTATTAACCGAACCtcttcttgatttttgttaattcactgact 1513
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 AGGACTTAGTATTAACCGAACCTCTTCTTGATTTTTGTTAATTCACTGACT 772
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60030226120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5