BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57380.1
Length=2221
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495838 jgi|Araly1|495838|fgenesh2_kg.8__1654__AT5G57380.1 3182 0.0
> Ahg495838 jgi|Araly1|495838|fgenesh2_kg.8__1654__AT5G57380.1
Length=2196
Score = 3182 bits (1723), Expect = 0.0
Identities = 2065/2226 (93%), Gaps = 39/2226 (2%)
Strand=Plus/Plus
Query 4 TCAGAGCAGAAGTTTCATCCATCAGAGGGTTTCCTCCTTAGAAACATCTAGAAAAAACAA 63
|||||||||||||||||||| | |||||||||||| ||||||||||||||| |||| ||
Sbjct 2 TCAGAGCAGAAGTTTCATCCCTTAGAGGGTTTCCT-CTTAGAAACATCTAG--AAAA-AA 57
Query 64 AAGgagagagagagagagaAGAACCATCCATCACAGAAACATCTTTTCCTTTTTCACTAA 123
|| | | || ||||||||||||||| | || |||||||||||||||||| | || ||
Sbjct 58 AA--A-A-AG-GAGAGAGAAGAACCA--C--CAGAGAAACATCTTTTCCTTTGT-AC-AA 106
Query 124 A-TCCCCATAAAAGATCTCTAAAATAAACCTAG-Ca-aaa-aaaaaaatcaagagaaaaa 179
| ||||||| ||||||||||||| ||||||||| | ||| ||||||||| |||| ||||
Sbjct 107 ATTCCCCATTAAAGATCTCTAAACTAAACCTAGAAAGAAAGAAAAAAATC-AGAG-AAAA 164
Query 180 aaacgaagaacacgaagaacgacaaacaaaaaaaaaaTGCAAGCTGCTTCGCTCTCAAAG 239
||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 165 AAACGAAGAACACGAAGAACG--------AAAAAAAATGCAAGCTGCTTCGCTCTCAAAG 216
Query 240 ATCTGGCGTTTCGATGGTAATGTGGGTCCAGAGAACATGGATTCTTCTTCGTTTGAAGAT 299
| ||||||||| ||||| |||||||||||||||||||||||||||||| | ||| |||||
Sbjct 217 ACCTGGCGTTTTGATGGAAATGTGGGTCCAGAGAACATGGATTCTTCTCCATTTCAAGAT 276
Query 300 AATGAATGCATTGAGACTTGTAAACCAAACGTTTTGAATGTAAGTGAAAGGAGAGAATTG 359
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 277 AATGAATGCATTGAGACTTGTAAACCAAACGATTTGAATGTAAGTGAAAGGAGAGAATTG 336
Query 360 ATCCACGCATTGTCTAACCAGCCTGAAGAAGCTTCGGAGCTTTTGAATTCATGGAGCAGA 419
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 337 ATCCACGCATTGTCTACCCAGCCACAAGAAGCTTCGGAGCTTTTGAATTCATGGAGCAGA 396
Query 420 AATGAGATCATGAAGATCATATGTGCTGAGATGGGTAAAGAAAGGAAGTACACTGGTCTT 479
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 397 AATGAGATCATGAAGATCATATGTGCTGAGATGGGTAAAGAGAGGAAGTACACTGGTCTG 456
Query 480 AACAAACCAAAGCTCATAGAGAATCTTCTGAATCTTGTGTCTCGTCCTCTTGGAGAGACC 539
||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 457 AACAAACCAAAACTCATTGAGAATCTACTCAATCTTGTGTCTCGTCCTCTTGGAGAGACT 516
Query 540 TCTTGTTCTGACCGTAGAAACTCGAGGAAGAAGGAGAAGAAGATGATCGGTTACATCATT 599
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 517 TCTTATTCTGACCGTAGAAACTCGAGGAAGAAGCAGAAGAAGATGATCGGTTACATCATT 576
Query 600 TGCTGTGAGAATTTAGCTTGTAGAGCTGCGCTTGGATGCGATGATACGTTTTGCAGAAGG 659
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 577 TGCTGTGAGAATTTAGCTTGTAGAGCTGCGCTTGGAAGCGATGATACTTTTTGCAGAAGG 636
Query 660 TGTTCTTGCTGCATCTGTCAAAAGTTTGATGATAATAAGGATCCTAGTTTATGGCTTACT 719
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 637 TGTTCTTGCTGCATTTGTCAAAAGTTTGATGATAATAAGGATCCGAGTTTATGGCTTACT 696
Query 720 TGTGATGCTTGTGGATCGTCTTGTCATTTGGAATGTGGTTTGAAGCAAGATAGGTATGGG 779
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 TGTGAGGCTTGTGGATCGTCTTGTCATTTGGAATGTGGTTTGAAGCAAGATAGGTATGGG 756
Query 780 ATTGGGAGTGATGATCTTGATGGTAGGTTTTATTGCGCGTATTGCGGTAAAGATAATGAC 839
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 757 ATTGGGAGTGATGATCTTGATGGTAGGTTTTATTGCGCATATTGCGGCAAAGATAATGAC 816
Query 840 TTGCTCGGATGCTGGAGAAAACAAGTGAAGGTGGCGAAAGAGACGCGGCGTGTGGATGTA 899
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 TTGCTCGGATGCTGGAGGAAACAAGTGAAGGTGGCGAAAGAGACGCGGCGTGTGGATGTA 876
Query 900 CTTTGTTATCGTCTTTCTTTAGGACAGAAGCTGTTGAGAGGTACCACGAAGTATCGGAAT 959
|||||||| ||||||||||||||||| ||||||||||||||||| | | |||||||||||
Sbjct 877 CTTTGTTACCGTCTTTCTTTAGGACAAAAGCTGTTGAGAGGTACAAGGCAGTATCGGAAT 936
Query 960 CTGTTGGAACTTATGGATGAGGCGGTGAAGAAGCTCGAAGGTGATGTGGGTCCGTTGTCG 1019
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 CTGTTGGAACTCATGGATGAGGCGGTGAAGAAGCTCGAAGGTGATGTGGGTCCGTTGTCG 996
Query 1020 GGTTGGGCCATGAAGATGGCTCGAGGCATCGTCAATAGACTTTCTTCGGG-TGTGCATGT 1078
|| ||||| ||||||||||||||||| |||||||| |||||||| ||||| | || ||
Sbjct 997 GGGTGGGCAATGAAGATGGCTCGAGGTATCGTCAAAAGACTTTCGTCGGGATCA-CAAGT 1055
Query 1079 CCAGAAGCTGTGTTCTCAGGCAATGGAAGCTCTGGACAAAGTGGTCTCACCATCAGAATC 1138
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1056 CCAGAAGCTGTGTTCTCAGGCAATGGAAGCTCTGGACAAAGTGGTCTCACCATCGGAATC 1115
Query 1139 TGTTTCAGGACAAGGTGACAAGATGACCGTGAGAGTAGAAGAGATTCAAGCAAGATCAGT 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 TGTTTCAGGACAAGGTGACAAGATGACCGTGAGAGTAGAAGAGATTCAAGCAAGATCAGT 1175
Query 1199 CACTGTGAGAGTAGACTCCGAGGAGCCGTCTTCTTCTACACAAAACAAGATCACAGGTTT 1258
|||||||||| |||| ||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1176 CACTGTGAGATTAGAGTCCGAGGAGCCATCTTCTTCTACACAAAACCAGATCACAGGTTT 1235
Query 1259 CAGGTTGTTTTGTCGAAAGTCGAAGGACGAAGAATGCTCGTCTCAGGGGAATTGTGTTGT 1318
||||||||||||||| ||||||||||||||||| ||||||||| ||| ||| |||||||
Sbjct 1236 CAGGTTGTTTTGTCGGAAGTCGAAGGACGAAGAGTGCTCGTCTGAGGTGAACTGTGTTGC 1295
Query 1319 TTATCTACCTGAGACGACGTCTGCCATCCAAGGACTTGAACCCGACACCGAGTTCTGTCT 1378
||||||||||| || | |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1296 GTATCTACCTGAAACAAGGTCTACCATCCAAGGACTTGAACCCGACACCGAGTTCTGTCT 1355
Query 1379 CAGAGTGGTTTCCTTTAACGAGGAAGGTGACTTAGATGAGTCTGAGCTTCGGTTCACAAC 1438
|||||| || ||||||||| |||||||||||||||||||||| ||||||| |||| ||||
Sbjct 1356 CAGAGTCGTGTCCTTTAACAAGGAAGGTGACTTAGATGAGTCCGAGCTTCAGTTCTCAAC 1415
Query 1439 GTTGAAGGATGATGGAGATGAAGCTGGGGACCAGCAAAGCCCTTTGACAAACTCAAGCAG 1498
||||| || || |||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1416 ATTGAAAGACAATATAGATGAAGCTCGGGACCGGCAAAGCCCTTTGACAAACTCAAGCAG 1475
Query 1499 TGGTCTTTGTAGTAATCCATCTTTAC-CAGAAGATGAATCTAATAATGTCAATAAAAGCT 1557
|||||||||||||||||||||||| | | ||||||||||||||||||||| |||| ||||
Sbjct 1476 TGGTCTTTGTAGTAATCCATCTTTGCAC-GAAGATGAATCTAATAATGTCCATAAGAGCT 1534
Query 1558 GCAGCAAAGGAAATGGTGACAAGGACAACACTGAACACTGTAGTGCAGGAGAAGTAGAAT 1617
||||| ||| ||| ||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1535 GCAGCGAAGAAAACGGTGACAAGGACAACACCGAACACTGTAATGCAGGAGAAGTAGAAT 1594
Query 1618 CTGAGCTTGAAGAAGAGAGGCTTGTAAAGAGGAAAGCAAACAAGATAGATGGAAGAGACT 1677
| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1595 CCGAGCTTGAAGAGGAGAGGCTTGTAAAGAGGAAAGCTAACAAGATAGATGGAAGAGACT 1654
Query 1678 TGCTTGTAACACCCTGCAAGAGAGATATTTATAAAGGAAAGCAAGGAGGGAATAAAAGAT 1737
||||||||||||||||||| |||||||||| ||| || ||||||||||||||||||||||
Sbjct 1655 TGCTTGTAACACCCTGCAAAAGAGATATTTCTAAGGGGAAGCAAGGAGGGAATAAAAGAT 1714
Query 1738 TCAAATCAAGAACAGTATCCTTGAACGAGAAACCTGAGATCAATAATGCCGCAAATGGAG 1797
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1715 TCAAATCAAGAACAATATCGGTGAACGAGAAACCTGAGATCAATAATGCCGCAAATGGGG 1774
Query 1798 TAGGAGATAAAGACTTGGGTCATATTGTTAAGACGATTAGATGTTTAGAGGAAGAAGGAC 1857
|||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||
Sbjct 1775 TAGGAGATAAAGACTTGGGTCAAATTGTGAAGACGATTAGATGTTTAGAGCAAGAAGGAC 1834
Query 1858 ATATAGACAAGAGTTTTAGGGAAAGGTTCTTGACATGGTATAGCTTAAGAGCTACTCACC 1917
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1835 ATATAGACAGGAGTTTTAGGGAAAGGTTCTTGACATGGTATAGCTTAAGAGCTACTCACC 1894
Query 1918 GAGAAGTAAGAGTTGTGAAGATCTTTGTTGAGACGTTTATGGAGGATCTGTCTTCTTTGG 1977
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1895 GAGAAGTTAGAGTTGTGAAGATCTTTGTTGAGACCTTTATGGAGGATCTGTCTTCTTTGG 1954
Query 1978 GACAACAGCTTGTGGATACATTCTCAGAAAGTATACTGAGTAAGAGATCATCGACAAATG 2037
|| |||||||||||||||||||||||||| | ||| |||| || |||||||| |||| ||
Sbjct 1955 GAGAACAGCTTGTGGATACATTCTCAGAATGCATAGTGAGCAAAAGATCATCAACAAGTG 2014
Query 2038 GTGTAGTACCTGCTGGGATCTGCCTCAAGCTTTGGCATTAAAAGCTTTTGAAATCGGTCT 2097
| || ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2015 GCGTTGTACCTGCTGGAATCTGCCTCAAGCTTTGGCATTAAA-GCTTTTGAAATCGGTCT 2073
Query 2098 ATTTATTAACTCGCTTGATATTGTAAACCATAACGATAATTTTGGAA-TGAAATTATGTA 2156
||||||||||| ||||||||| || |||||||||||| ||||| || ||||||||||||
Sbjct 2074 ATTTATTAACTTTCTTGATATTCTACACCATAACGATA-TTTTG-AAGTGAAATTATGTA 2131
Query 2157 AGTACGCATTTCCAATTTCTTTCTGATG-CTTAGTGAAAAACTCAAAAATGAATAAGCCT 2215
||||| |||||||||||||||||||||| || |||||||| |||||||||||||| || |
Sbjct 2132 AGTACACATTTCCAATTTCTTTCTGATGTCT-AGTGAAAACCTCAAAAATGAATAGGCAT 2190
Query 2216 GATTTC 2221
||||||
Sbjct 2191 GATTTC 2196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83608087775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5