BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57440.1
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495843 jgi|Araly1|495843|fgenesh2_kg.8__1659__AT5G57440.1 1764 0.0
> Ahg495843 jgi|Araly1|495843|fgenesh2_kg.8__1659__AT5G57440.1
Length=1087
Score = 1764 bits (955), Expect = 0.0
Identities = 1050/1095 (96%), Gaps = 10/1095 (1%)
Strand=Plus/Plus
Query 18 ATCGAATCAACAATGTCGAATCCTGCAGCCGTCACCGCCGGCAGAGGATCAATCACTCAC 77
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 ATCGAATCAATAATGTCGAATCCTGCAGCCGT---CGCCGGCAGAGGATCAATCACTCAC 57
Query 78 GTCATATTCGACATGGACGGTCTTCTTCTCGATACTGAGAAGTTTTACACTGAGGTCCAA 137
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 58 GTCATATTCGACATGGACGGTCTTCTTCTCGACACTGAGAAGTTTTACACTGAGGTCCAA 117
Query 138 GAGATTATACTTGCTAGGTTCAATAAAAAGTTTGATTGGTCTCTCAAGGCTAAAATGATG 197
||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 118 GAGATTATACTTGCTAGATTCAATAAAAAATTTGATTGGTCTCTTAAGGCTAAAATGATG 177
Query 198 GGTAGAAAAGCAATAGAAGCTGCCAGGATCTTTGTTGAAGAAAGCGGGATTAGCGACTCT 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GGTAGAAAAGCAATAGAAGCTGCCAGGATCTTTGTTGAAGAAAGCGGGATTAGCGACTCT 237
Query 258 CTTTCAGCTGAGGACTTTCTTGTCGAGAGAGAGTCAATGTTGCAAGACCTTTTCCCTACT 317
||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 238 CTTTCCGCTGAGGACTTCCTTGTCGAGAGGGAGTCAATGTTGCAAGACCTTTTCCCTACT 297
Query 318 AGTGAGCTCATGCCAGGGGCTAGTAGACTCATTAAGCATCTCCATGT-AAAGAATATTCC 376
||||||||||||||||||||||| ||||||| |||||||||||| | ||||||||||||
Sbjct 298 AGTGAGCTCATGCCAGGGGCTAGCCGACTCATCAAGCATCTCCAT-TCAAAGAATATTCC 356
Query 377 AATATGTATTGCTACCGGTACTCACACACGGCATTATGATCTGAAAACCCAAAGACACAG 436
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 357 AATATGTATTGCTACCGGTACTCACACACGACATTATGATCTAAAAACCCAAAGACACAG 416
Query 437 AGAGCTTTTCTCATTGATGCATCACGTAGTTCGTGGTGATGATCCAGAGGTGAAGCAAGG 496
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 417 AGAGCTTTTCTCATTGATGCATCACATAGTTCGCGGTGATGATCCAGAGGTGAAGCAAGG 476
Query 497 AAAGCCTGCTCCTGACGGGTTTCTCGCTGCTGCTAGGAGATTTAAGGACGGTCCTGTGGA 556
||||||||| || ||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 477 AAAGCCTGCCCCAGACGGGTTTCTCGCTGCAGCTAGGAGATTTAAGGTCGGTCCTGTGGA 536
Query 557 TTCACAAAAGGTTCTGGTGTTTGAAGATGCTCCATCTGGAGTTCTTGCTGCTAAAAACGC 616
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 537 TTCACAAAAGGTTCTGGTGTTCGAAGATGCTCCATCTGGAGTTCTTGCTGCTAAAAACGC 596
Query 617 CGGAATGAACGTGGTTATGGTACCGGATCCTAGACTAGATATCTCTCACCAAGATGTTGC 676
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 597 CGGAATGAACGTGGTGATGGTACCGGATCCTAGACTAGATATCTCTTACCAAGATGTTGC 656
Query 677 AGATCAAATCATAACCTCTCTAGTCGATTTTAAACCGGAAGAGTGGGGCTTGCCTCCATT 736
|||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||
Sbjct 657 AGATCAAATCATAACCTCTCTACTCGATTTTAAACCGGAGGAGTGGGGTTTGCCTCCATT 716
Query 737 CGAAGATTCGAACTAAACGATACAAACGTCTTCAAGGTAATGATAAAAACTCAAATCATG 796
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 717 CGAAGATTCAAACTAAACGATACAAGCGTCTTCAAGGTAATGATAAAAACTCAAATCATG 776
Query 797 AAGCTTATTCTTTGTCTTG-TTATATTGTTTTGGCATGTACATGACAAAGGCCATGAGGC 855
|||||||||||||||||| |||||| ||||||||||||||||||||| |||||||| ||
Sbjct 777 AAGCTTATTCTTTGTCTTTATTATATCGTTTTGGCATGTACATGACAA-GGCCATGATGC 835
Query 856 TTTATGTCGTCAAGGGTTCTATGATTTTCTGGCTATTGAAGACATAAAAAGAAACTAAGT 915
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 836 ATTATGTCGTCAAGGGTTCTATGATTTTCTGGCTATTGAAGATATAAAAATAAACTAAGT 895
Query 916 GGTGACATGACGAGAGACCAAACaaaaaaaTTTGCCTCAACGTTTAAACAAATTATTTTT 975
||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||
Sbjct 896 GGTGACATGACGAGAGACCAAACAAAAAA-TT-GCCTCAACGTTTAAACAAATTTTTTTT 953
Query 976 GTACAACTACTCTTACCCACAAGTTTCAACATTGGCTTATCTTATTTTGTTCTTGTCGGT 1035
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GTACAACTACTCTTACCCACAAGTTTCAACATTGGCTTATCTTATTTTGTTCTTGTCGGG 1013
Query 1036 ATAGCTGAATTGATTCCTTCTTTATGGTTTGGAATCTCTCTTCTTTACGCATCACTAACA 1095
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 ATAGCTGAATTGATTCCT-CTTTATGGTTTGGAATCTCTCTTCTTTACGCATCACTAACA 1072
Query 1096 TGTGTTGTTACTGCA 1110
|||||||||||||||
Sbjct 1073 TGTGTTGTTACTGCA 1087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42621421206
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5