BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57560.1
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950444 jgi|Araly1|950444|scaffold_802331.1 1437 0.0
Ahg343582 jgi|Araly1|343582|fgenesh1_pg.C_scaffold_3003345 200 2e-50
> Ahg950444 jgi|Araly1|950444|scaffold_802331.1
Length=890
Score = 1437 bits (778), Expect = 0.0
Identities = 855/891 (96%), Gaps = 10/891 (1%)
Strand=Plus/Plus
Query 34 ACAATCTCTAGAAAATGGCGATCACTTACTTGCTTCCTCTGTTTCTTTCTCTTATCATCA 93
|||||||||| |||||| | ||||||||||| ||||||||||||||||||| ||||||
Sbjct 8 ACAATCTCTAAAAAATGTCAATCACTTACTTACTTCCTCTGTTTCTTTCTC---TCATCA 64
Query 94 CCTCCTCTGTTTCAGCTAATTTCCAAAGAGACGTTGAGATCACTTGGGGTGATGGTCGTG 153
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 TCTCCTCTGTTTCAGCTAATTTCCAAAGAGACGTTGAGATCACTTGGGGTGATGGTCGTG 124
Query 154 GACAGATCAAGAACAATGGAGAGCTTCTCACTTTATCTCTAGATAAATCCTCTGGTTCTG 213
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 125 GACAGATCAAGAACAATGGAGAGCTTCTTACTTTATCTCTAGATAAATCCTCTGGTTCTG 184
Query 214 GATTCCAATCCAAAAACGAGTACTTGTTTGGTAAAGTCTCCATGCAAATGAAGCTTGTCC 273
||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||
Sbjct 185 GATTCCAATCCAAAAACGAATACTTGTTCGGTAAAATCTCCATGCAAATGAAGCTTGTCC 244
Query 274 CTGGAAACTCCGCAGGAACAGTCACAACACTTTACTTGAAATCACCTGGAACAACATGGG 333
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 245 CTGGAAACTCCGCAGGAACCGTCACAACACTCTACTTGAAATCACCTGGAACAACATGGG 304
Query 334 ACGAGATAGATTTCGAGTTTTTAGGG-AATTCAAGTGGAGAACCTTACACACTTCACACA 392
|||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||
Sbjct 305 ACGAGATAGATTTCGAGTTTTT-GGGTAATTCAAGTGGAGATCCTTACACACTTCACACA 363
Query 393 AATGTCTACACACAAGGCAAAGGAGACAAAGAACAACAATTCAAACTCTGGTTTGATCCA 452
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 AATGTCTACACGCAAGGCAAAGGAGACAAAGAACAACAATTCAAACTCTGGTTTGATCCA 423
Query 453 ACAGCTAATTTCCACACTTACACTATTCTCTGGAACCCACAAAGAATCATTTTCACCGTC 512
|||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 424 ACAGCTGATTTCCACACTTACACCATTCTCTGGAACCCACAAAGAATCATCTTCACCGTC 483
Query 513 GATGGAACTCCGATCAGAGAATTCAAGAACATGGAGTCTCTAGGCACTCTGTTTCCCAAG 572
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 GATGGAACTCCAATTAGAGAATTCAAGAACATGGAGTCTCTAGGCACTCTGTTTCCCAAG 543
Query 573 AACAAACCAATGAGAATGTACTCGAGTCTTTGGAACGCTGATGATTGGGCAACGAGAGGT 632
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 544 AACAAACCAATGAGGATGTACTCTAGTCTTTGGAACGCTGATGATTGGGCAACGAGAGGT 603
Query 633 GGTTTGGTCAAAACCGATTGGTCTAAAGCTCCTTTCACTGCTTCTTACCGTGGCTTTCAA 692
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 604 GGTTTGGTCAAAACCGATTGGTCTAAAGCTCCTTTCACTGCTTCCTACCGTGGCTTTAAA 663
Query 693 CAAGAAGCTTGTGTTTGGTCAAACGGCAAGTCTTCTTGTCCTAATGCCTCGAAACAGGGG 752
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 664 CAAGAAGCTTGTGTTTGGTCAAACGGCAAGTCTTCTTGTCCTAATGCCTCCAAACAGGGG 723
Query 753 ACTACTACTGGCTCGTGGTTGTCACAAGAGCTTGACTCAACAGCTCAACAAAGGATGAGA 812
|| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 724 AC--C-ACTGGCTCGTGGTTGTCACAAGAGCTTGACTCAACGGCTCAACAAAGGATGAGA 780
Query 813 TGGGTGCAGAGGAACTACATGATCTATAATTATTGTACGGATGCGAAGAGGTTCCCTCAA 872
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 781 TGGGTGCAGAGGAACTACATGATCTATAATTATTGTACGGATGCAAAGAGGTTCCCTCAA 840
Query 873 GGTCTTCCTAAAGAGTGCTTAGCTGCATAGAGAGAGTAAAGAGTTGAGAGA 923
|||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 841 GGTCTTCCTAAAGAGTGCTTAGCTGCATAGAGAG--TAAAGCGTTGAGAGA 889
> Ahg343582 jgi|Araly1|343582|fgenesh1_pg.C_scaffold_3003345
Length=915
Score = 200 bits (108), Expect = 2e-50
Identities = 390/523 (75%), Gaps = 32/523 (6%)
Strand=Plus/Plus
Query 122 AGACGTTGAGATCACTTGGGGTGATGGTCGTGGACAGATCAAGAACAATGGAGA-GCTTC 180
|||| |||| || || |||||||||||| | ||| | || || |||||| | ||||
Sbjct 90 AGACATTGACATAACCTGGGGTGATGGTAGAGGAAATATTTTGAGCAATGG-TACTCTTC 148
Query 181 TCACT-TTATCTCTAGATAAATCCTCTGGTTCTGGATTCCAATCCAAAAACGAGTACTTG 239
| | | | | ||| ||| |||| || || || || || ||||| ||| |||||| |||
Sbjct 149 TAAATCTCGT-TCTTGATCAATCTTCGGGATCAGGGTTTCAATCGAAAGCCGAGTATTTG 207
Query 240 TTTGGTAAAGTCTCCATGCAAATGAAGCTTGTCCCTGGAAACTCCGCAGGAACAGTCACA 299
| || ||| || ||||| || || |||||||| ||||| || || || || || ||
Sbjct 208 TACGGAAAATTCGATATGCAGATCAAACTTGTCCCGGGAAATTCAGCCGGGACCGTGACC 267
Query 300 ACACTT-TACTTGAAATCACCTGGAACAACATGGGACGAGATAGATTTCGAGTTTTTAGG 358
|| ||| || ||||| || | ||| |||||||||||||||||||||||||||||| ||
Sbjct 268 AC-CTTCTATTTGAAGTCTCAAGGATTAACATGGGACGAGATAGATTTCGAGTTTTT-GG 325
Query 359 G-AAT-TCAAGTGGAGAACCTTACACACTTCACACAAATGTCTACACACAAGGCAAAGGA 416
| ||| | | ||||||| ||||||| ||||||| ||||| ||||| |||||||||||
Sbjct 326 GTAATGTTA-GTGGAGATCCTTACATTGTTCACACTAATGTTTACACTCAAGGCAAAGGT 384
Query 417 GACAAAGAACAACAATTCAAACTCTGGTTTGATCCAACAGCTAATTTCCACA-CTTACAC 475
|| | ||| ||||||||| | || ||||| |||||||||||| | ||||||| || || |
Sbjct 385 GATAGAGAGCAACAATTCTACCTTTGGTTCGATCCAACAGCTGAGTTCCACAACT-ACTC 443
Query 476 TATTCTCTGGAACCC-A--CAAAGAATCATTTTCACCGTCGATGG-AACTCCGATCAGAG 531
||||| ||||| || | || | | | || | | | ||||| || || || ||||
Sbjct 444 CATTCTATGGAATCCGAGTCACATAGTG-TTCT-ATATT-GATGGGAAG-CCAATTAGAG 499
Query 532 AATTCAAGAACATGGA-GTC-TCTAGGCACTCTG--TT-TCCCAAGAACAAACCAATGAG 586
|||||||||| |||| | | | | || | || || ||| || ||| |||| |||||
Sbjct 500 AATTCAAGAATTTGGAAG-CAT-TGGG---TGTGGCTTATCCAAAAAACCAACCCATGAG 554
Query 587 AATGTACTCG-AGTCTTTGGAACGCTGATGATTGGGCAACGAG 628
|||||| | | ||||| |||||||| || |||||||| |||||
Sbjct 555 AATGTA-TGGTAGTCTATGGAACGCAGACGATTGGGCCACGAG 596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39762202431
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5