BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57660.1
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495863 jgi|Araly1|495863|fgenesh2_kg.8__1679__AT5G57660.1 948 0.0
> Ahg495863 jgi|Araly1|495863|fgenesh2_kg.8__1679__AT5G57660.1
Length=1374
Score = 948 bits (513), Expect = 0.0
Identities = 741/840 (88%), Gaps = 59/840 (7%)
Strand=Plus/Plus
Query 618 GTTCTTCTGACTTTATGTTTTCTGATTTCGATCGGCTTATTGATTTCGAGTTTCCGAATT 677
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 554 GTTCTTCTGAGTTTATGTTTTCTGATTTCGATCGTCTTATTGATTTCGAGTTTCCGAATT 613
Query 678 CGTTCAATCAT-CAT--CAAAACAACGCCGGAGGAGATAGTCTTGTTCCGGTTCAGACGA 734
||||||||||| | | || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 614 CGTTCAATCATCCGTCGCATAACAACGCCGGTGGAGATAGTCTTGTTCCGGTTCAGACGA 673
Query 735 AAACAGAGCCTCTCCCGTTAACTAACAATGATCATTGCTTCGATATTGATTTCTGCAGAT 794
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 674 AAACAGAGCCTCTTCCGTTAACTAACAATGATCATTGCTTCGATATAGATTTCTGCAGAT 733
Query 795 CAAAGCTCTCTGCTTTCACTTACCCTTCTCAATCAGTCAGCCACAGTGTTTCGACTTCTT 854
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 734 CAAAGCTCTCTGCTTTCACTTACCCTTCTCAATCAGTTAGCCACAGTGTTTCGACTTCGT 793
Query 855 CTATTGAATACGGTGTAGTTCCTGACGGAAACAC--A-AA--------C---AA-CTC-- 897
|||||||||||||||| ||||||||||||||||| | || | || |||
Sbjct 794 CTATTGAATACGGTGTTGTTCCTGACGGAAACACAAACAACTCTGTTTCTGAAATCTCAG 853
Query 898 -T--G-TTAACCGGAGCACGATCACTAGCTCGACGAC--TG-G---TGGTGATCATCAAG 947
| | ||||||||||||||||||||| ||||||| | | | |||||||||||||
Sbjct 854 TTCCGTTTAACCGGAGCACGATCACTACCTCGACGGCGGCGAGTACTGGTGATCATCAAA 913
Query 948 CGAGCTCTATGGATAGAGAAGCTAGGGTTTTGAGGTACAGAGAGAAGAGAAAGAACAGGA 1007
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 CGAGCTCCATGGATAGAGAAGCTAGGGTTTTGAGGTACAGAGAGAAGAGAAAGAACAGGA 973
Query 1008 AATTTGAGAAGACGATTCGTTACGCTTCGAGGAAAGCTTATGCAGAGTCACGGCCAAGGA 1067
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 974 AATTTGAGAAGACGATTCGTTATGCTTCGAGGAAAGCTTATGCAGAGTCACGGCCAAGGA 1033
Query 1068 TCAAAGGCCGGTTTGCGAAAAGAACAGAGACAGAAAACGACGACATTTTCCTTAGTCATG 1127
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1034 TCAAAGGCCGGTTTGCGAAAAGAACAGAGACAGAAAACGACGACGTTTTCCTTAGTCATG 1093
Query 1128 TTTATGCTTCAGCAGCACACGCACAGTACGGTGTCGTACCAACGTTCTGA-TTCGAATCT 1186
||||||||||||| || | |||||||||||||||||||||||||||||| |||||||||
Sbjct 1094 TTTATGCTTCAGCCGC-C--GCACAGTACGGTGTCGTACCAACGTTCTGAATTCGAATCT 1150
Query 1187 ACGGTGGATAAACAATCAACCTGAAGACTTCATATCTTCCACCGTTGATTTACAGTCGGT 1246
|||||||||||| ||||||| |||||||||| ||||| |||||| ||||||| || |||
Sbjct 1151 ACGGTGGATAAAGAATCAACTTGAAGACTTCCCATCTTTCACCGTCGATTTACCGTGGGT 1210
Query 1247 GTATAATAAGTATAGTGAGTCTTACCGTAGACAAACATCTTATCCTCTTTACCGTTTTAA 1306
|||||||||||||||||||||||||| ||||||||||| | | | | ||| ||| |
Sbjct 1211 GTATAATAAGTATAGTGAGTCTTACCCTAGACAAACAT-T-A-C-T-TTT----TTT-AC 1260
Query 1307 TTACtttttttttAC-GCG-CTCTCACTGCCACTGTAACTCtttttttttttCTT-C-CT 1362
|| | | | || || || | | || ||||||| |||||||||||||| | ||
Sbjct 1261 G--CTCTCTCTC-ACTGCCACTATAAAGGC---TGTAACTTTTTTTTTTTTTCTTTCTCT 1314
Query 1363 ---ATA--TATGTATGCTTATTTTTATTTAGAAAATGTTATGAAATCATATAATTTGGTA 1417
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1315 TCTATAAATATGTATGCTTATTTTTATTTAGAAAATGTTATAAAATCATATAATTTGGTA 1374
Score = 826 bits (447), Expect = 0.0
Identities = 528/566 (93%), Gaps = 9/566 (2%)
Strand=Plus/Plus
Query 1 CATCCAAGCAAATCAAATACCCAACTCTCACACGTTCTCAAACAAAAACTTCAAagagag 60
|||| |||||||||||||||||||||||||||||||||||||| |||||||| | | ||
Sbjct 1 CATCGAAGCAAATCAAATACCCAACTCTCACACGTTCTCAAACCAAAACTTC--A-A-AG 56
Query 61 agagagagagagTTTTGTGAACTCAAG-AA-AATaaaaaaaGTTA-TAGTTAATGGGATT 117
|||||||| |||| |||||||||| || || ||||||| | ||||||||||||||
Sbjct 57 AGAGAGAGTTTTTTTTCTGAACTCAAGAAAGAAAAAAAAAAAAGAGTAGTTAATGGGATT 116
Query 118 CGGCTTAGAGAGTATCAAATCAATCTCCGGCGGATGGGGCGCGGCGGCGCGTTCCTGTGA 177
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 117 CGGCTTAGAGAGTATCAAATCAATCTCCGGCGGGTGGGGCGCGGCGGCGCGTTCCTGTGA 176
Query 178 CGCTTGTAAATCAGTTACCGCCGCCGTGTTCTGTCGAGTTGACTCAGCTTTCTTATGCAT 237
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 177 CGCTTGTAAATCAGTAACCGCCGCCGTGTTCTGTCGACTTGACTCAGCTTTCTTATGCAT 236
Query 238 AGCATGTGACACAAGAATCCATTCCTTCACTCGCCACGAGCGCGTGTGGGTTTGTGAAGT 297
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 ATCATGTGACACAAGAATCCATTCCTTCACTCGCCACGAGCGCGTGTGGGTTTGTGAAGT 296
Query 298 TTGTGAACAAGCTCCCGCCGCCGTCACTTGCAAAGCCGACGCCGCCGCTCTTTGCGTCAG 357
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTGCGAACAAGCTCCCGCCGCCGTCACTTGCAAAGCCGACGCCGCCGCTCTTTGCGTCAC 356
Query 358 TTGTGATGCCGATATTCACTCTGCTAATCCTCTCGCTAGCCGTCACGAACGTGTCCCCGT 417
||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 357 TTGTGATTCCGATATTCACTCAGCTAATCCACTCGCTAGCCGTCACGAACGTGTCCCCGT 416
Query 418 CGAAACTTTCTTCGACTCAGCCGAAACCGCCGTCGCCAAAATCTCAGCTTCTTCGACTTT 477
|| |||||||||||||||| ||||||||||||||||||||||| ||||||||| |||
Sbjct 417 AGAGTCTTTCTTCGACTCAGCTGAAACCGCCGTCGCCAAAATCTCTCCTTCTTCGAGTTT 476
Query 478 TGGTATCCTTGGCTCATCCACCACCGTTGATTTAACCGCTGTTCCGGTTATGGCTGATGA 537
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 477 TGGTATCCTTGGCTCATCCACCACCGTGGATTTAACCGCTGTTCCGGTTATGGGTGATGA 536
Query 538 TCTCGGTTTATGTCCGTGGTTACTTC 563
|||||||||||||||||| || ||||
Sbjct 537 TCTCGGTTTATGTCCGTG-TT-CTTC 560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53745335695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5