BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57840.1
Length=1544
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950480 jgi|Araly1|950480|scaffold_802367.1 2006 0.0
> Ahg950480 jgi|Araly1|950480|scaffold_802367.1
Length=1372
Score = 2006 bits (1086), Expect = 0.0
Identities = 1280/1374 (93%), Gaps = 12/1374 (1%)
Strand=Plus/Plus
Query 53 TTTAGTGATCGTGGA-TCAAATGAAGATTCGGGTGAAGCAAGCTACGATCGTGAAGCCAG 111
||||||||| || || |||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 2 TTTAGTGATTGT-GAGTCAAATGAAGATTCAGGTGAAACAAGCTACGATCGTGAAGCCAG 60
Query 112 CTGAAGAAACACCCACACACAATCTATGGCTTTCCAATTTAGACTTGATTCAAGTGAGAC 171
|||| |||||||| |||||||||||||||||||| ||||||||| |||| |||||||||
Sbjct 61 CTGAGGAAACACCTACACACAATCTATGGCTTTCTAATTTAGACCTGATACAAGTGAGAT 120
Query 172 TTCACATGGGCACTCTCTACTTCTACAAACCTTGTTCCTCCTCCGATCGTCCCAACACTC 231
|||||||||| || ||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 121 TTCACATGGGGACACTCTATTTCTACAACCCTTGTTCCTCCTCCGATCGTCCAAACACTC 180
Query 232 AATCCCTCATCGAAGCTCTGAGCAAGGTTCTTGTCTTCTTTTATCCTGCCGCTGGGAGAC 291
|||| || ||||| ||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 181 AATCTCTTATCGATGCTCTGAGCAAGGTTCTTGTCCTCTTCTATCCTGCCGCTGGGAGAC 240
Query 292 TCC-AAAAGAATACGAATGGGAGGTTAGAGGTTCAATGTAATGGAGAAGGAGTTTTGTTT 350
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCAAAAAG-ATACGAATGGGAGGTTAGAGGTTCAATGTAATGGAGAAGGAGTTTTGTTT 299
Query 351 GTAGAGGCTGAAAGTGATTCTACTGTTCAAGACATTGGCTTACTCACTCAAAGTTTGGAT 410
||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 300 GTAGAGGCTGAGACTGATTCTACTGTACAAGACATTGGCTTACTCACTCAAAGTTTGGAT 359
Query 411 CTTTCTCAACTTGTACCTACCGTTGACTATGCAGGAGATATCTCCTCCTATCCTCTTCTT 470
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 360 CTTTCTCAACTTGTACCTACCGTTGACTACGCGGGAGATATCTCCTCCTATCCTCTTCTT 419
Query 471 CTCTTTCAGGTTACTTATTTCAAATGTGGAACGATCTGTGTTGGAAGTTCAATACACCAT 530
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 420 CTCTTTCAGGTTACATATTTCAAATGTGGAACGACCTGTGTTGGAAGTTCAATACACCAT 479
Query 531 ACATTCGGAGAAGCTACTTCTCTTGGGTATATCATGGAAGCATGGTCTCTAACTGCTAGG 590
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 480 ACATTCGGAGAAGCTACTTCTCTTGGGTATATCATGGAAGCATGGTCTCAAACTGCTAAG 539
Query 591 GGACTTTTAGTTAAGCTAACACCGTTCTTAGACCGCACTGTTCTTCATGCACGTAACCCT 650
|||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 540 GGACTTCCAGTTAAGCTAACACCGTTCTTAGACCGCACTGTTCTTCGTGCACGGAACCCT 599
Query 651 CCCT-CCTCTGTTTTTCCGCACACTGAGTACCAATCACCCCCATTTCACAATCATCCGAT 709
|||| || |||||||||| ||| ||||||||||| ||||||| |||||||| | ||||||
Sbjct 600 CCCTTCC-CTGTTTTTCCTCACGCTGAGTACCAACCACCCCCCTTTCACAACCCTCCGAT 658
Query 710 GAAATCCCTGGCTTACAGATCAAATCCGGAATCTGATTCTGCTATTGCCACTCTCAAGCT 769
|||||| ||||||||||||||||||| |||||||||||||| ||||||| |||||||||
Sbjct 659 TAAATCCGTGGCTTACAGATCAAATCCAGAATCTGATTCTGCGATTGCCAGTCTCAAGCT 718
Query 770 CACACGTCTCCAACTGAAAGCTCTTAAAGCTAGGGCAGAGATTGCTGATAGTAAGTTCAG 829
||||||||||||||||||||||||| || | |||||||||||||||||||||||||||
Sbjct 719 TTCACGTCTCCAACTGAAAGCTCTTAAGGCAAAGGCAGAGATTGCTGATAGTAAGTTCAG 778
Query 830 TACATATGAAGTTCTGGTGGCGCATACCTGGCGTTGTGCTT-CTTTTGCAAATGAAGACT 888
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
Sbjct 779 TACATATGAAGTTCTGGTGGCGCATACCTGGCGTTGTGCTTGCTTT-GCAAATGAAGATT 837
Query 889 TAAGTGAAGAACATTCGACGAGGTTGCATATAATAATTGATGGGAGGCCGAGACTACAAC 948
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 838 TAAGTGAAGAACACTCGACGAGGTTGCATATAATAATTGATGGGAGGCCAAGACTACAAC 897
Query 949 CAAAGCTTCCGCAAGGATACATTGGGAACACTCTCTTTCACGCTCGACCGGTATCACCGT 1008
| |||||||| ||||||||||||||||||||||||||||||||||| || ||||| | ||
Sbjct 898 CGAAGCTTCCACAAGGATACATTGGGAACACTCTCTTTCACGCTCGGCCTGTATCTCAGT 957
Query 1009 TGGGTGCTTTCCACAGAGAGAGTTTCAGTGAAACAGTGGAGAGAGTTCATAGAGAAATAA 1068
|||||| ||| || |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 958 TGGGTGATTTTCATAGAGAGAGTTTCAGTGAAACAGTGGAGAGAGTTCATGGCGAAATAA 1017
Query 1069 GGAAAATGGACAACGAGTACTTGAGATCAGCGATTGACTACTTGGAGAGACATCCTGATC 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GGAAAATGGACAACGAGTACTTGAGATCAGCGATTGACTACTTGGAGAGACATCCTGATC 1077
Query 1129 TCGACCAATTAGTTCCTGGTGAAGGTAATACAATCTTCAGCTGCGCAGCAAACTTCTGCA 1188
|||| || ||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1078 TCGATCAGTTAGTTCCTGGTGAAGGTAATCCGATCTTCAGCTGCGCAGCAAACTTCTGCA 1137
Query 1189 TCGTCAGTCTAATCAAA-CAGACCGCGTACGAAATGGATTTCGGATGGGGAAAAGCTTAC 1247
||||| |||||| |||| |||||||| ||||||||||||||||||||||||| ||||| |
Sbjct 1138 TCGTCGGTCTAA-CAAAACAGACCGCTTACGAAATGGATTTCGGATGGGGAAGAGCTTTC 1196
Query 1248 TACAAGAGAGCTTCACATTTAAATGAAGGGAAGGGATTTGTAACTGGGAACCCAGACGAA 1307
|||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1197 TACAAGAGAGCTTCACATGTAAATGAAGGGAAGGGATATGTAACTGGGAGCCCAGACGAA 1256
Query 1308 GAAGGGAGCATGATGCTAACCATGTGCTTGAAGAAGACTCAGCTTAGTAAGTTTCGAAAG 1367
| ||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| |||
Sbjct 1257 GTAGGGAGCTTGATGCTAACCATGTGCCTGAAGAAGACTCAGCTTGGTAAGTTTCGGAAG 1316
Query 1368 CTATTTTATGAGTTTCTCAATGTCTCCGCACTGTGAGA--CAATCAGAAGCCTT 1419
|| |||||||||||||||||||| |||||| ||||||| |||||| |||||||
Sbjct 1317 CTGTTTTATGAGTTTCTCAATGTGTCCGCATTGTGAGAGACAATCACAAGCCTT 1370
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57820991910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5