BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57870.1
Length=2946
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495887 jgi|Araly1|495887|fgenesh2_kg.8__1703__AT5G57870.1 4625 0.0
> Ahg495887 jgi|Araly1|495887|fgenesh2_kg.8__1703__AT5G57870.1
Length=2916
Score = 4625 bits (2504), Expect = 0.0
Identities = 2808/2947 (95%), Gaps = 52/2947 (2%)
Strand=Plus/Plus
Query 7 ACCCTAATAAAGAGAAGGGATTGTGtctccttctcgacttcttcttcttcttctcatttc 66
|||||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 1 ACCCTAATAAAGAGAAGGGATTGTGTCTCCTTCTCGACTTCTTCTTCTTCCT-TC--TTC 57
Query 67 tcaatctcaacttttctcttctcttctcttcttcGCTAACGGCAGgagagagagagaCCC 126
||||||||||| | | ||||| | || |||| || |||||||||||||||
Sbjct 58 TCAATCTCAAC---T-T-TTCTC-T-TC-TCTT--CT--------GAGAGAGAGAGACCC 99
Query 127 AGAAATCCGATCCCTCCTCTCCTTGGATTATCGGAGTCAGCGATTCATCGTCGCTGATAA 186
|| || |||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 100 AGGAAGCCGATCCCTCCTCTCCTTCGATTATCGGATTCAGCGATTCATCGTCGCTGATAA 159
Query 187 AGCTTCTA-C---CT-TT--CTCT--TCGATTTTTGTTGTGAGATTCGATTCGATCTTAA 237
|||||||| | || || |||| |||||||||||||||||||||||||||||| | |
Sbjct 160 AGCTTCTACCTTTCTCTTCCCTCTCGTCGATTTTTGTTGTGAGATTCGATTCGATC-T-A 217
Query 238 GGCGGATTAGATCGAGGTATGCAGCAAGGCGATCAAACGGTTCTGAGCTTGAGACCTGGT 297
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 218 GGCGGATTAGATCGAGGTATGCAGCAAGGCGATCAAACGGTGCTGAGCTTGAGACCTGGT 277
Query 298 GGCGGTCGAGGAAACAGACTATTTGGttcctcttcttcttcttcgtctctctcttttggc 357
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 278 GGCGGTCGAGGAAACAGACTTTTTGGTTCCTCTTCTTCTTCTTCGTCTCTCTCTTTTGGC 337
Query 358 tctctttcatcttcggatctacctctccttcgtcctcATGGTGGTGCTCCTGCTTCCTCT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 TCTCTTTCATCTTCGGATCTACCTCTCCTTCGTCCTCATGGTGGTGCTCCTGCTTCCTCT 397
Query 418 TTTCCCTTCAAGGGTGGAGACTCGAGGTTCGATGGCCGTGAACGTGTGAAGTACACCCGT 477
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 398 TTTCCCTTCAAGGGTGGAGACTCGAGGTTTGATGGCCGTGAACGTGTGAAGTACACCCGT 457
Query 478 GAGCAGCTCCTGGAGCTTAAAGAGACCACTCAACTCTCTGATGAAATTCTGAGAGTCCAA 537
|||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 458 GAGCAGCTTCTGGAACTTAAAGAGATCACTCAACTCTCTGATGAAATTCTGAGAGTCCAA 517
Query 538 CGGGAAACTGCAGCTGAACTGTTTGGTGAGGAAGGGACTTGGGCACGTGGAGAAAGTGTC 597
|||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 518 CGGGAAACTGCAACAGAACTGTTTGGTGAGGAAGGGACTTGGGCACGTGGGGAAAGTGTC 577
Query 598 GTAAGCAATTTGGTTCCCGTTCAATCCGCAAGTCGCTTCTCTGAGCCAGACTCTCGTGAT 657
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 578 GTAAGCAATTTGGTTCCGGTTCAATCCGCAAGTCGCTTCTCTGAGCCAGACTCTCGCGAT 637
Query 658 TGGCGTAGCCGTTCTACTCAACCTCCACCCTCTGGGGAGGAAAGGTCGTGGGATAATCTT 717
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 638 TGGCGTAGCCGTTCTACTCAACCTCCACCTTCTGGAGAGGAAAGGTCGTGGGATAATCTC 697
Query 718 CGTGAAGCTAAAGATTCCAGGTATGTTGAAGCAAGTCAATATAATCGTCAAGACCAACCT 777
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 698 CGTGAAGCTAGAGATTCCAGGTATGTTGAAGCAAGCCAATATAATCGTCAAGACCAACCT 757
Query 778 AATTCCCAGTTTTCAAGGGCAAACATATCATCCAACCAAGGGGGTGGACCAGCTCCTGTC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 AATTCCCAGTTTTCAAGGGCAAACATATCATCCAACCAAGGGGGTGGACCAGCTCCTGTC 817
Query 838 CTCGTCAAAGCCGAAGTTCCTTGGTCAGCTAGAAGAGGAAACCTTTCTGAAAATGATCGT 897
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 818 CTCGTCAAAGCCGAAGTGCCTTGGTCAGCTAGAAGAGGAAACCTTTCTGAAAATGATCGA 877
Query 898 GTTCTGAAGACTGTGAAAGGGATACTGAACAAGCTAACCCCTGAAAAGTATGACCTTCTC 957
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 GTTCTGAAGACTGTGAAAGGGATACTGAACAAGCTAACCCCTGAAAAGTATGACCTTCTT 937
Query 958 AAGGGCCAACTTATTGAATCTGGCATCACATCTGCTGATATCCTGAAGGGTGTGATTACC 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 AAGGGCCAACTTATTGAATCTGGCATCACATCTGCTGATATCCTGAAGGGTGTGATTACC 997
Query 1018 CTTATTTTTGACAAAGCTGTCCTTGAGCCGACCTTTTGCCCTATGTATGCAAAATTGTGC 1077
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 998 CTTATTTTTGACAAAGCTGTCCTTGAGCCGACCTTTTGCCCTATGTACGCAAAATTGTGC 1057
Query 1078 TCTGATATCAACGACCAGCTGCCCACCTTCCCACCTGCAGAGCCTGGGGATAAGGAGATT 1137
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 TCTGATATCAACAACAAGCTGCCCACCTTCCCACCTGCAGAGCCTGGGGATAAGGAGATT 1117
Query 1138 ACATTTAAGAGGGTTCTACTGAATATCTGTCAAGAGGCATTTGAGGGCGCTTCTCAGTTG 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1118 ACATTTAAGAGGGTTCTACTGAATATCTGTCAAGAGGCATTTGAGGGCGCTTCCCAGTTG 1177
Query 1198 AGGGAGGAGCTTAGACAGATGAGTGCTCCAGATCAGGAGGCTGAGCGGAATGACAAAGAA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 AGGGAGGAGCTTAGACAGATGAGTGCTCCAGATCAGGAGGCTGAGCGGAATGACAAAGAA 1237
Query 1258 AAATTGTTGAAGCTCAAGACTCTAGGAAATATTCGTTTGATTGGTGAGCTTTTGAAGCAG 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1238 AAATTGTTGAAGCTCAAGACTCTAGGAAATATTCGTTTGATTGGTGAGCTTTTAAAGCAG 1297
Query 1318 AAGATGGTCCCAGAAAAGATTGTTCATCACATTGTTCAGGAGCTTCTGGGGGCCGATGAG 1377
|||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1298 AAGATGGTTCCAGAAAAGATTGTTCATCACATTGTAAAGGAGCTTCTTGGGGCCGATGAG 1357
Query 1378 AAAGTTTGTCCAGCCGAGGAAAATGTCGAAGCTATTTGTCATTTCTTCAAAACTATTGGC 1437
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1358 AAAGTTTGTCCAGCAGAGGAAAATGTCGAAGCTATTTGTCATTTCTTCAAAACAATTGGC 1417
Query 1438 AAACAACTTGACGGAAACGTGAAGTCAAAACGGATTAATGATGTATATTTCAAACGCCTA 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 AAACAACTTGACGGAAACGTGAAGTCAAAACGGATTAATGATGTATATTTCAAACGCCTA 1477
Query 1498 CAGGCTCTGTCAAAGAATCCTCAGTTGGAACTGCGTCTGAGATTCATGGTTCAGAATATC 1557
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 CAGGATCTGTCAAAGAATCCTCAGTTGGAACTGCGTCTGAGATTCATGGTTCAGAATATC 1537
Query 1558 ATCGACATGCGCTCCAATGGCTGGGTTCCAAGGCGGGAAGAGATGAAAGCAAGAACTATA 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1538 ATCGACATGCGCTCCAATGGCTGGGTTCCAAGGCGGGAAGAGATGAAAGCAAGAACTATA 1597
Query 1618 ACCGAAATACATACTGAGGCAGAGAAGAATCTTGGTCTCCGACCAGGTGCCACTGCAAAT 1677
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1598 ACCGAAATCCATACTGAGGCAGAGAAGAATCTTGGTCTCCGACCAGGTGCCACTGCAAAT 1657
Query 1678 ATGAGAAGGGGTATGGTTTCTAGTGGTGGGCCTGTGAGCCCTGGCCCTGTCTACCCTGGT 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1658 ATGAGAAGGGGTATGGTTTCTAGTGGTGGGCCTGTGAGCCCTGGCCCTGTCTACCCTGGT 1717
Query 1738 GGGCGACCTGGTGCGGGTGGCTTGATGCCTGGTATGCCTGGGACGCGAAGGATGCCTGGG 1797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1718 GGGCGACCTGGTGCGGGTGGCTTGATGCCTGGTATGCCTGGGACGCGAAGGATGCCTGGG 1777
Query 1798 ATGCCCGGAGTGGACAATGATAACTGGGAGGTACCCCGGACAAGATCAATGTCTAGACGC 1857
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1778 ATGCCCGGGGTTGACAATGATAACTGGGAGGTACCCCGGACAAGATCAATGTCTAGACGT 1837
Query 1858 GATGGGCCAGGACCTCTACATTCTCCAGCAGTGAGCAAGTCGGCCTCAATGAACACGAGG 1917
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1838 GATGGGCCAGGACCTCTGCATTCTCCAGCAGTGAGCAAGTCGGCCTCAATGAACACGAGG 1897
Query 1918 CTCTTACCTCAAGGCAGCAGTGGCATTATGAGTGGCAAGACAAGCGCACTGTTGCAGGGA 1977
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1898 CTCTTACCTCAAGGCAGCAGCGGCATTATGAGTGGCAAGACAAGCGCACTGTTGCAGGGA 1957
Query 1978 AGTGGTTCAGTGTCGCGTCCAGTTACCGTGTCAGCAGAACGGCCAGCACAGTCAGTTGCA 2037
|| ||||||||||| || ||||||||||||||||||| || |||||||||||||| ||||
Sbjct 1958 AGCGGTTCAGTGTCCCGCCCAGTTACCGTGTCAGCAGTACCGCCAGCACAGTCAGCTGCA 2017
Query 2038 CCTCTGACCGTACCAGTTCCGGTGGAGAAACCACAGCCTAGTGGTCCCAAGTTGAGCGAA 2097
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2018 CCTCTGACCGTACCAGTACCGGTGGAGAAACCACAGCCTAGTGCTCCCAAGTTGAGCGAA 2077
Query 2098 GAAGTGCTCCAAAGAAAAACAAAGTCGCTTCTCGAGGAATATTTCAATGTCCGACTACTT 2157
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 2078 GAAGTGCTCCAAAGAAAAACAAAGTCACTTCTCGAGGAATATTTCAATGTCCGACTTCGT 2137
Query 2158 GGTGAAGCTCTGCAGTGTGTAGAGGAGCTTGGTT-TGCCGTCATATCACCCAGAGTTTGT 2216
| |||||||||||||||||||||||||||||| | | || |||||||| |||||||||||
Sbjct 2138 GATGAAGCTCTGCAGTGTGTAGAGGAGCTTGGGTCT-CCTTCATATCATCCAGAGTTTGT 2196
Query 2217 GAAGGAAGCAATATCCCTGTCTCTTGAGAAAAGCCCGCCTGTCGTTGAGCCAATTGCT-A 2275
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
Sbjct 2197 GAAGGAAGCAATATCCCTGTCCCTTGAGAAAAGCCCGCCTGTCGTCGAGCCAATTGCTGA 2256
Query 2276 CACTCTTGGAGTATTTGTTATCAAAGAAGGTAGTCGCACCCAAGGATCTTGAAACTGGGT 2335
|||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||
Sbjct 2257 T-CTCTTGGAGTATTTGTTATCAAAGAAGGTACTCACACCCAAGGATCTTGAAACCGGGT 2315
Query 2336 TCTTGCTCTACGGTGCTATGTTGGACGACATTGGAATTGATCTTCCTAAGGCACCAAACA 2395
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2316 TCTTGCTCTATGGTGCTATGCTGGACGACATTGGAATTGATCTTCCTAAGGCACCAAACA 2375
Query 2396 ATTTTGGTGAGATTGTGGGAAAGCTGATTCTGGCTGGTGGTGTGGATTTCAAATTGGTTA 2455
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2376 ACTTTGGTGAGATTGTGGGAAAGCTGATTCTGGCTGGTGGTGTGGATTTCAAGTTGGTTA 2435
Query 2456 GAGAAATTATAGGGAAGATGGAAGACGATAGGTTCCAGAAGATGGTGGTCGATGCAGCTG 2515
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2436 GAGAAATTATAGGGAAGATGGAAGACGATAGGTTCCAGAAGATGGTGGCCAATGCAGCTC 2495
Query 2516 TACGCATTGTGGAGTCAAGCGAGCAGGGGAAGTCCTTGTTGGCCTCACAGGCTGCAGACA 2575
||||||| |||||||| || ||||||||||||||| |||||||||||||||| ||||||
Sbjct 2496 TACGCATCGTGGAGTCGAGTGAGCAGGGGAAGTCCCTGTTGGCCTCACAGGCAGCAGACG 2555
Query 2576 TAGAGGCTTGTCGGAATCTGTAAAAGGAATCATTACTTGACGATTTTGCTCTCTCTGGGT 2635
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 2556 TAGAGGCTTGTCGGAATCTGTAAAAGGAATCATTGCTTTACGATTTTGCTCTCTCTGGGT 2615
Query 2636 CTTATGCTTGTGCGATGAATGTTGTGTTGTAAGCTTGAAGGAGGAGGAGAAAAGGATTCT 2695
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2616 CTTATGCTTGTGCGATGAATGTTGTGTTGTAAGCTTGAAGGAGGAGGAGAAGAGGATTCT 2675
Query 2696 CAGAACTCAAAAATAGTTTTGCTCTTCGTTGAAGCTTTTTCTTATGACATTATTCTCACC 2755
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2676 CAGAACTCAAAAATAGTTTTGCTCTTCTTTGAAGCTTTTG-TTATGACATTATTCTCACC 2734
Query 2756 ACTCTTCTTTGTGGGCATGAGTCCATGTCcttttttgtattcttctgtgacttgtctttt 2815
|||||| |||||||| ||| |||| |||||||||||||||||||||| ||||| ||||||
Sbjct 2735 ACTCTTGTTTGTGGGGATGTGTCCTTGTCCTTTTTTGTATTCTTCTGAGACTTCTCTTTT 2794
Query 2816 -t-tt-----gacctttgcatttttgttttACGGTCTCAGTTATTATATTCAGTTGATTG 2868
| || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2795 CTATTTTTTTGACCTTTGCATTTTTGTTTTACGGTCTCAGTTATT-----CAGTTGATTG 2849
Query 2869 TTGTTGAGACTT-GAGACCCCTATAAACT-GGTCGGTTCAGATAA-TTACATTGGAAATG 2925
|||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 2850 TTGTTGAGACTTTGAGACCCCTATAAACTTGGTCGGTTCAGATAAATTACATTGGAAATG 2909
Query 2926 TTTGATC 2932
|||||||
Sbjct 2910 TTTGATC 2916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111223515400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5