BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57887.1
Length=529
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495889 jgi|Araly1|495889|fgenesh2_kg.8__1705__AT5G57887.1 706 0.0
Ahg950486 jgi|Araly1|950486|scaffold_802373.1 265 3e-70
> Ahg495889 jgi|Araly1|495889|fgenesh2_kg.8__1705__AT5G57887.1
Length=509
Score = 706 bits (382), Expect = 0.0
Identities = 474/516 (92%), Gaps = 16/516 (3%)
Strand=Plus/Plus
Query 1 ACCAAATTGTTATTAAATATGTCCTG-CAGAAATAATATCTTCTTCAACTACTCTCACGT 59
||||||||||||||||||| |||| | |||||||||||||||||||||||| |||||||
Sbjct 1 ACCAAATTGTTATTAAATAAGTCC-GACAGAAATAATATCTTCTTCAACTA--CTCACGT 57
Query 60 CTTCTTTTATAAAAGCAAGCCATAGGACGAAAACCTTATCTTA---T--AGCAAAGATGC 114
||||||||||||||||||||| |||||| |||||||||||||| | |||| ||||||
Sbjct 58 CTTCTTTTATAAAAGCAAGCCGTAGGACTAAAACCTTATCTTATCTTAGAGCAGAGATGC 117
Query 115 GTGACATCAAAGGCTTACTCATCCTATCGATCATCTTACTCCTGGTCTTGTCTCAGTCCC 174
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 118 GTGACATCAAAGGCTTACTCATCCTATCGATCATCTTACTCCTGGTCTTTTCTCAGTGCC 177
Query 175 TTCTTTTGTGTTCAGGTCATGTCGATCACGAAGCTGGTGTGACAAGGAAGCTTGGAGTCT 234
|||||||||| |||||||||| |||| |||||||||||| ||||||||||||||||||||
Sbjct 178 TTCTTTTGTGCTCAGGTCATGGCGATGACGAAGCTGGTGCGACAAGGAAGCTTGGAGTCT 237
Query 235 TCATAAGGAGAAGGGCAAGAAGATTCAGAGGACATCGCCCCACATCTGCTTCCATTACAC 294
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 238 TCATAAGGAGAAGGGCAAGAAGATCCAGAGGACATCGCCCCACATCTGCTTCCACAACAC 297
Query 295 TTTTGTCAGGCTCCTTCCATATGACTGCTTGCCTTGCCACCTCTAGTTCTTGCAGTTCTC 354
|||||||||||| ||| ||||||||||||||||||||||||||| ||| ||| |||||
Sbjct 298 TTTTGTCAGGCTTCTTTCATATGACTGCTTGCCTTGCCACCTCT--TTCCTGCT-TTCTC 354
Query 355 TTCTTTTCTAGGTTCCATCTACTATCAAAAGTAGTTTT-CTTTTTCTACTCTCCTTACAA 413
||||| |||||||| |||||||| |||||||| ||||| |||||| |||| |||||||||
Sbjct 355 TTCTTATCTAGGTTTCATCTACTGTCAAAAGTGGTTTTTCTTTTTTTACTTTCCTTACAA 414
Query 414 G-AATTG-TGTAGTACATAGTAACACGTCTTTGTAATGCGTTTATGTAAGTTGAGTTCTA 471
| ||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 415 GTAAT-GATGTAGTACATAGTAACACTTCTTTGTAATGCGTTTATGTAAGTTGAGTTCTA 473
Query 472 CATAAGCATGTATTTGTACAAATTTAATGCTTGAAA 507
||||||||| ||| ||||||||||||||||||||||
Sbjct 474 CATAAGCATTTATGTGTACAAATTTAATGCTTGAAA 509
> Ahg950486 jgi|Araly1|950486|scaffold_802373.1
Length=295
Score = 265 bits (143), Expect = 3e-70
Identities = 255/305 (84%), Gaps = 24/305 (8%)
Strand=Plus/Plus
Query 93 CCTTATCTT-ATAGCAAAGATGCGTGACATCAAAGGCTTACTCATCCTATCGATCATCTT 151
||||||||| | |||| ||||| ||||||||||| |||| ||||||||||| ||| ||||
Sbjct 4 CCTTATCTTAAGAGCAGAGATGGGTGACATCAAACGCTTCCTCATCCTATCAATCCTCTT 63
Query 152 ACTCCTGGTCTTGTCTCAGTCCCTTCTTTTGTGTTCAGGTCAT-GTCGATCACGAAGCTG 210
||||||| ||||||||||||| ||||||||||||||||||| | | |||| | |||||||
Sbjct 64 ACTCCTGTTCTTGTCTCAGTCTCTTCTTTTGTGTTCAGGTC-TAGGCGATGATGAAGCTG 122
Query 211 GTGTGACAAGGAAGCTTGGAGTC-TTCATAAGGAGAAGG-GCAAGAAGATTCAG-AGGAC 267
||||||||||||||||||||| | ||||||| | |||| |||||| | | | ||| |
Sbjct 123 GTGTGACAAGGAAGCTTGGAG-CATTCATAAAAA-AAGGCGCAAGAT-A--CGGGAGG-C 176
Query 268 ATCGC-CC-C-ACATCTGCTTC--CATTACACTTTTGTCAGGCTCCTTCCATATGACTGC 322
|| | || | ||||||| ||| || |||||||||||||||||||||||||||| | |
Sbjct 177 GTCCCACCACCACATCTGATTCTGCA--ACACTTTTGTCAGGCTCCTTCCATATGATTAC 234
Query 323 TTGCCTTGCCACCTCTAGTTC-TTGCAGTTCTCTTCTTTTCTAGGTTCCATCTACTATCA 381
|||||||||||||||| ||| || | |||||| |||||||||||| | |||||| |||
Sbjct 235 TTGCCTTGCCACCTCT--TTCCTT-CT-TTCTCTCCTTTTCTAGGTTTCTTCTACTGTCA 290
Query 382 AAAGT 386
|||||
Sbjct 291 AAAGT 295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19268572445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5