BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57930.2
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917507 jgi|Araly1|917507|Al_scaffold_0008_2258 2008 0.0
> Ahg917507 jgi|Araly1|917507|Al_scaffold_0008_2258
Length=1305
Score = 2008 bits (1087), Expect = 0.0
Identities = 1256/1333 (94%), Gaps = 29/1333 (2%)
Strand=Plus/Plus
Query 87 ATGTCGATAACGTACTCCGCTATTTCCTCTAGTACAGTTTCTGGGTTTTCACCAAAAAGT 146
||||||||||| |||||||||||||||||| ||||| | ||||||| ||||||
Sbjct 1 ATGTCGATAACTTACTCCGCTATTTCCTCTGGTACA--------G-TTTCACCTAAAAGT 51
Query 147 GTACCTTTTGCTATTCATAGCGTAACCAGGAGGCAATTTCTTAATCCCAACACGTTTTAT 206
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
Sbjct 52 GTACCTTTTGCTATTCGTAGCGTAACCAGGAGGCAATTTCTTAATCCCAACCCGTTTTCT 111
Query 207 AGATTTGGGTTCTCTCCTTCTCTTCAGGGAAGTAGCATTGAGTTTAGCCTTCAGTTGAAT 266
||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 112 AGATTCGGGTTCTCTCCTTCTCTTCAGGGAAGTAGCATTGAGTTTAG-----AGTTG--- 163
Query 267 TCAAGAGTTGTGCTTAGTAAAGAGCGTCGATCTCTGCCATTAGTTGTGAGAAATGATCGT 326
| || |||||||||||||||||||||| ||||| |||||||||| |||||||
Sbjct 164 T---GA-------TTAGTAAAGAGCGTCGATCTCTTCCATTGGTTGTGAGAAGTGATCGT 213
Query 327 CCTCAGAATGAAGACTTACCTAAGCAGTACACAAGGCGAGAGAAGAAACCTTTCCCAGTC 386
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 214 CCTCAGAATGAAGACTTACCTAAGCAGTACACAAGGCGAGAGAAGAAACCTTTTCCGGTG 273
Query 387 CCTATTGTGGACCTGAGACGAGCTGCGAGGGAGAGAGTCAAGAACAACAAAGACAAACCT 446
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 CCAATTGTGGACCTGAGACGAGCTGCGAGGGAGAGAGTCAAGAACAACAAAGACAAACCT 333
Query 447 AAGAGACCTCTACCTCCGCCTAAAAATGGTATGGTTGTGAAGAGCCTTGTGCCTCTTGCT 506
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 AAGAGGCCTCTACCTCCGCCTAAAAATGGTATGGTTGTGAAGAGCCTTGTGCCTCTTGCT 393
Query 507 TATAAAGTATACAATGCAAGAATCAGATTGATCAACAATCTCCACCGGCTTATGAAAGTT 566
|||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 394 TATAAAGTGTACAATGCAAGAATCAGATTGATCAACAATCTCCACCGCCTCATGAAAGTT 453
Query 567 GTTCGTGTTAATGCTTGTGGGTGGTGCAATGAGATTCATGTTGGACCTTATGGGCATCCA 626
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 454 GTTCGTGTTAATGCTTGTGGGTGGTGCAATGAGATTCATGTTGGACCTTACGGGCATCCA 513
Query 627 TTTAAGTCGTGTAAAGGTCCCAATACTTCCCAAAGGAAAGGTCTTCATGAATGGACTAAC 686
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 514 TTTAAGTCGTGTAAAGGTCCCAATGCTTCCCAAAGGAAAGGTCTTCATGAATGGACAAAC 573
Query 687 TCGGTTATTGAGGACGTTATTGTTCCTCTTGAAGCCTATCACCTTTTTGACCGCCTTGGC 746
|| ||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||
Sbjct 574 TCAGTTATTGAGGACGTTATTGTTCCTCTTGAAGCCTATCACCTCTATGACCGTCTTGGC 633
Query 747 AAGCGTATCCGTCATGATGAAAGATTCTCGATTCCCCGAGTTCCTGCTGTAGTTGAGCTC 806
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 634 AAGCGTATCCGTCACGATGAGAGATTCTCGATTCCACGAGTTCCTGCTGTAGTTGAGCTC 693
Query 807 TGCATTCAGGGCGGCGTTGAAATACCC-GAATTTCCAGCAAAAAGGAGAAGAAAACCGAT 865
||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| ||
Sbjct 694 TGCATTCAGGGCGGCGTTGAAAT-CCCTGAATTTCCAACAAAAAGGAGAAGAAAACCAAT 752
Query 866 TATCCGCATTGGCAAAAGCGAGTTTGTTGATGCAGATGAAACTGAATTGCCTGATCCAGA 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 TATCCGCATTGGCAAAAGCGAGTTTGTTGATGCAGATGAAACTGAATTGCCTGATCCAGA 812
Query 926 GCCTCAGCCTCCTCCAGTGCCATTGTTAACTGAGTTACCTGTCTCAGAGATCACTCCCCC 985
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 813 GCCTCAGCCTCCTCCAGTGCCATTGTTAACTGAGTTACCTGTCTCTGAGATCACTCCTCC 872
Query 986 ATCTAGCGAAGAAGAAACAGTCTCCTTAGCCGAAGAAACATTACAGGCCTGGGAAGAAAT 1045
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 873 ATCTAGCGAAGAAGAAACGGTCTCCCTAGCCGAAGAAACATTACAGGCCTGGGAAGAAAT 932
Query 1046 GAGAGCAGGAGCCAAAAAGCTGATGAGGATGTACAGGGTTAGGGTCTGTGGGTACTGTCC 1105
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 933 GAGAGCAGGAGCCAAAAAGCTGATGAGGATGTACAGGGTTAGGGTTTGTGGGTACTGTCC 992
Query 1106 AGAGGTTCACGTAGGTCCAACGGGACACAAGGCCCAGAACTGTGGTGCATTCAAGCACCA 1165
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 993 CGAGGTTCACGTAGGTCCAACGGGGCACAAGGCCCAGAACTGTGGTGCATTCAAACACCA 1052
Query 1166 ACAGCGGAATGGCCAGCATGGTTGGCAATCTGCAGTACTTGACGACTTGATACCGCCAAG 1225
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1053 ACAGCGGAATGGCCAGCATGGTTGGCAATCTGCAGTCCTTGACGACTTGATACCACCAAG 1112
Query 1226 ATATGTTTGGCATGTTCCTGATGTGAATGGGCCACCGATGCAGCGAGAGCTACGAAGCTT 1285
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1113 ATATGTTTGGCATGTTCCTGATGTGAATGGGCCGCCGTTGCAGCGAGAGCTACGAAGCTT 1172
Query 1286 CTACGGGCAAGCACCTGCTGTTGTGGAGATATGTGCTCAGGCTGGCGCTGTTGTACCTGA 1345
||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct 1173 CTACGGGCAAGCACCTGCTGTGGTGGAGATATGCGCTCAGGCTGGTGCCGTTGTACCTGA 1232
Query 1346 GCATTATAGAGCTACAATGAGACTGGAGGTTGGAATTCCTTCGAGTGTGAAAGAAGCTGA 1405
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 GCAGTATAGAGCTACAATGAGACTGGAGGTTGGAATTCCTTCGAGTGTGAAAGAAGCTGA 1292
Query 1406 GATGGTTGTTTGA 1418
|||||| ||||||
Sbjct 1293 GATGGTCGTTTGA 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58316165095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5