BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57960.1
Length=2008
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950495 jgi|Araly1|950495|scaffold_802382.1 2687 0.0
> Ahg950495 jgi|Araly1|950495|scaffold_802382.1
Length=1666
Score = 2687 bits (1455), Expect = 0.0
Identities = 1598/1667 (96%), Gaps = 9/1667 (1%)
Strand=Plus/Plus
Query 5 GCTCCTTCATTCTCCACCATGAGCTCGTTTTACCTTTCTTCTTCTCCAATTTTCAAACTT 64
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 GCTCCTTCAATCTCCACCATGAGCTCGTTTTACCTTTCTTCTTCTCCAATTTTCAAACTT 62
Query 65 CAGTGGCACGCAAAC-CATAAACCTAAACCCAATCGTGCAATAGTTTCTTTTCCACCT-T 122
||||||||||||||| | |||||||||||||| |||| | || |||||| ||||| || |
Sbjct 63 CAGTGGCACGCAAACGC-TAAACCTAAACCCAGTCGTCCTATTGTTTCTCTTCCA-CTCT 120
Query 123 CTCGTCTTCATGCCAACTGCTATTCGTGGAGATTATCTTGTAACCTTGCTCAACATGGTA 182
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 CTCGTCTTCATGCCAACTGCTATTCGTGGAGATTATCTTGTAACCTTACTCAACATGGTC 180
Query 183 TTGAGTTGGAGGAAACTGTGGAGGAAGATGAAATCCTTCAAGTTCTCGACTTACCAACAG 242
| ||||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||
Sbjct 181 TCGAGTTGGAGGAAACTGTTGAGGAAGATGAAATCCCTCAAGTTCTCGAATTACCTACAG 240
Query 243 AGGA-GA--CAAATCTCGACAACGAAACGATTGCTTCTCCATCTAAAATGTTGAGGAAGA 299
|||| || ||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 241 AGGAGGAGCCAAATTTCGACAAGGAAACGATTGCTTCTCCATCTAAAATGTTGAGGAAGA 300
Query 300 AAAAAGGAGATGAAGAGAGCTTGGACGATAGATTCAAGCTCAGAAATGGAAAGGAGATTT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAAAAGGAGATGAAGAGAGCTTGGACGATAGATTCAAGCTCAGAAATGGAAAGGAGATTT 360
Query 360 TCGAAGAGAAGGCATATCTAGTGGGCGTGGAAAGAAAGGGTGATGGAGAATGCTTGTTTA 419
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 TTGAAGAGAAGGCATATCTAGTGGGCGTGGAAAGAAAGGGTGATGGAGAATGTTTGTTTA 420
Query 420 ATATTGAGGAATCTCTTGAGGAGCTAGAACAACTTGCGGATACTGCTGGGCTTGCAGTGG 479
|||| ||||| || |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 421 ATATAGAGGAGTCCCTTGAGGAACTAGAACAGCTTGCGGATACTGCTGGGCTTGCAGTGG 480
Query 480 TTGGTTCTACTTATCAAAAGCTAGCTTCCCCAAATCCTAGAACATACATTGGATCAGGAA 539
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 481 TTGGTTCTACTTATCAAAAGCTTGCGTCCCCAAATCCTAGAACATACATTGGATCAGGAA 540
Query 540 AGGTCGCAGAGATAAAAAGTGCAATTAATGCTTTGGACGTTGAGACTGTGATATTTGACG 599
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 541 AGGTCGCAGAGATAAAAAGTGCTATTAATGCATTGGACGTTGAGACCGTGATATTTGACG 600
Query 600 ATGAACTTTCACCAGGGCAATTGCGTAACCTGGAAAAGGCCTTTGGTGGGGATGTTCGAG 659
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATGAACTTTCACCTGGGCAATTGCGTAACCTGGAAAAGGCCTTTGGTGGGGATGTTCGAG 660
Query 660 TTTGTGACCGCACCGCCCTTATCTTGGACATTTTCAACCAAAGGGCCGCAACTCATGAAG 719
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 661 TTTGTGACCGCACCGCCCTTATCTTGGACATTTTTAACCAAAGGGCTGCAACTCATGAAG 720
Query 720 CAGCCTTGCAGGTTGCTCTAGCACAAATGGAGTACCAGTTGCCACGATTAACTAGAATGT 779
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 721 CAGCCTTGCAGGTTGCTCTAGCACAAATGGAGTACCAGTTACCACGATTAACTAGAATGT 780
Query 780 GGACTCATCTTGAGCGTCAATCTGGTGGCCAAGTTAAGGGTATGGGAGAAAAACAAATTG 839
||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 781 GGACTCACCTTGAGCGTCAATCTGGTGGACAAGTTAAGGGCATGGGAGAAAAACAAATTG 840
Query 840 AAGTTGATAAGCGAATCTTGCGTACTCAAATTGGAGTTCTCAAAAAGGAGTTGGAATCTG 899
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 841 AAGTTGATAAGCGAATCTTGCGGACTCAAATTGGAGTTCTCAAAAAGGAGTTGGAATCTG 900
Query 900 TAAGAAAGCATCGGAAGCAGTATAGAAGCAGGCGTGTTGCTATACCTGTACCTGTTGTAT 959
|||||||||| || ||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 901 TAAGAAAGCACCGAAAGCAGTATAGAAGCCGGCGTGTTGCTATACCAGTACCTGTTGTAT 960
Query 960 CCTTGGTCGGTTACACAAACGCTGGAAAGAGTACACTATTGAACCAATTGACTGGTGCTA 1019
| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 961 CTTTGGTTGGTTACACAAACGCTGGAAAGAGTACACTATTAAACCAATTGACTGGTGCTA 1020
Query 1020 ATGTTCTCGCTGAAAATCGTTTGTTTGCAACTCTTGATCCAACTACGAGAAGGGTTCAGA 1079
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1021 ATGTTCTCGCTGAAAATCGTTTGTTTGCGACTCTTGATCCAACTACGAGAAGGGTTCAGA 1080
Query 1080 TGCAAAACGGGAAGGAATTTCTTCTCACAGATACTGTTGGTTTTATCCAAAAGTTACCAA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TGCAAAACGGGAAGGAATTTCTTCTCACAGATACTGTTGGTTTTATCCAAAAGTTACCAA 1140
Query 1140 CCACTCTGGTTGCTGCTTTCAGAGCAACACTTGAAGAAATAGCAGAGTCAAGCCTTTTGG 1199
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CCACCCTGGTTGCTGCTTTCAGAGCAACACTTGAAGAAATAGCAGAGTCAAGCCTTTTGG 1200
Query 1200 TGCATGTTGTTGACATCAGCCACCCACTGGCAGAGCAACAAATAGAAGCTGTGGAGAAGG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1201 TGCATGTTGTTGACATCAGCCACCCACTGGCAGAGCAACAAATAGAAGCTGTGGAAAAGG 1260
Query 1260 TTATGTCTGAACTCGACGTTTCATCAATTCCAAAATTGGTCGTGTGGAATAAGGTTGATA 1319
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1261 TTATGTCTGAACTCGACGTTTCATCAATTCCAAAGTTGGTCGTGTGGAATAAGGTTGATA 1320
Query 1320 GAGTGGATGATCCTCAAAAGGTCAAGCTGGAAGCAGAGGAA-ACTGGGGATACAATTTGT 1378
|||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct 1321 GAGTGGATGATCCTCAAAAGGTCAAGCTGGAAGCAGAG-AAGAGTGGGGATACAATTTGT 1379
Query 1379 ATATCTGCTCTGACTGGAGAAGGACTAGACGACTTCTGCAATGCTGTTCATGAGAAGCTC 1438
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1380 ATATCTGCTCTGACTGGAGAAGGACTAGATGACTTCTGCAATGCTGTTCATGAGAAGCTC 1439
Query 1439 AAGGATTCAATGGTTTGGGTTGAAGCCCTTTTGCCATTTGATAAAGGGGACCTTCTAAGC 1498
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1440 AAGGATTCAATGGTTTGGGTTGAAGCCCTTTTGCCTTTTGATAAGGGGGACCTTCTAAGC 1499
Query 1499 ACCATACACAAGGTTGGAATGGTGAAAGAAACTGAATATACAGAGAATGGGACACTTATC 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1500 ACCATACACAAGGTTGGAATGGTGAAAGAAACTGAATATACAGAGAATGGGACGCTCATC 1559
Query 1559 AGGGCACACGTTCCGCTACGTTTTGCACAGCTGCTTAAACCTATGAGACACTTGGTCAAA 1618
||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 AGGGCTCATGTTCCACTTCGTTTTGCACAGCTGCTTAAACCTATGAGACACTTGGTCAAA 1619
Query 1619 GATACTTCAATAAGCCAAAGAGGATGAACCAGAATCATAGCAAGAAC 1665
|||||||| |||||||||| ||| |||| ||||||||||||||||||
Sbjct 1620 GATACTTCCATAAGCCAAAAAGGGTGAAGCAGAATCATAGCAAGAAC 1666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75494865590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5