BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G58070.1 Length=1065 Score E Sequences producing significant alignments: (Bits) Value Ahg950508 jgi|Araly1|950508|scaffold_802395.1 976 0.0 Ahg495912 jgi|Araly1|495912|fgenesh2_kg.8__1728__AT5G58060.1 355 3e-97 Ahg950520 jgi|Araly1|950520|scaffold_802407.1 78.7 8e-14 Ahg950519 jgi|Araly1|950519|scaffold_802406.1 67.6 2e-10 > Ahg950508 jgi|Araly1|950508|scaffold_802395.1 Length=610 Score = 976 bits (528), Expect = 0.0 Identities = 584/611 (96%), Gaps = 3/611 (0%) Strand=Plus/Plus Query 28 agaagaagaaaagaaaa-agaagagaaatgacagagaagaaagagaTGGAAGTGGTGAAA 86 |||||||| |||||||| |||||||||||||||||||||||||||||| | ||||||||| Sbjct 1 AGAAGAAG-AAAGAAAAGAGAAGAGAAATGACAGAGAAGAAAGAGATGCAGGTGGTGAAA 59 Query 87 GGGCTCAACGTGGAGAGATACATGGGCCGTTGGTACGAGATTGCTTCTTTCCCATCAAGG 146 |||||| || |||||||||||||||| || ||||||||||||||||||||||| |||||| Sbjct 60 GGGCTCGACTTGGAGAGATACATGGGTCGATGGTACGAGATTGCTTCTTTCCCCTCAAGG 119 Query 147 TTTCAGCCAAAGAACGGCGTCGACACTCGCGCCACCTACACCCTTAACCCCGACGGTACC 206 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TTTCAGCCTAAGAACGGCGTCGACACTCGCGCCACCTACACCCTTAACCCCGACGGTACG 179 Query 207 ATACACGTCTTGAACGAAACGTGGAGCAACGGGAAGAGGGGTTTTATCGAAGGCAGCGCC 266 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GTGCACGTCTTGAACGAAACGTGGAGCAACGGGAAGAGGGGTTTTATCGAAGGCAGCGCC 239 Query 267 TATAAGGCCGATCCTAAAAGCGACGAAGCCAAGCTCAAAGTCAAGTTCTATGTCCCTCCT 326 |||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||| Sbjct 240 TATAAGGCCGATCCTAAAAGCGACGAGGCTAAGCTCAAAGTCAAGTTCTACGTCCCTCCT 299 Query 327 TTCCTCCCAATCATTCCCGTCACCGGAGACTACTGGGTGCTCTACATCGATCCTGACTAC 386 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 300 TTCCTCCCAATCATTCCCGTCACCGGCGACTACTGGGTGCTCTACATCGATCCTGACTAC 359 Query 387 CAGCACGCTCTCATTGGCCAGCCTTCCAGGAGTTATCTCTGGATATTGAGCAGGACGGCG 446 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 CAGCACGCTCTCATCGGCCAGCCTTCCAGGAGTTATCTCTGGATATTGAGCAGGACGGCG 419 Query 447 CAAATGGAGGAAGAGACGTATAAGCAGCTGGTGGAGAAGGCAGTGGAGGAAGGTTATGAC 506 || |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 420 CATATGGAGGAAGAGACGTATAAGCAGCTGGTGGAGAAGGCGGTGGAGGAAGGTTACGAC 479 Query 507 ATCAGCAAGCTTCACAAGACTCCTCAGAGTGACACACCACCTGAGTCCAACACTGCCCCT 566 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 480 ATCAGCAAGCTTCACAAGACTCCTCAGAGCGACACACCACCTGAGTCCAACACTGCCCCT 539 Query 567 GAAGACTCCAAGGGCGTTTGGTGGTTCAAATCTCTCTTCGGCAAATAGATTACACGGCAC 626 ||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| Sbjct 540 GAAGACTCCAAGGGCATTTGGTGGTTCAAATCTCTCTTCGGCAAATAGATTACTCAACAC 599 Query 627 ACAAA-GACTT 636 ||||| ||||| Sbjct 600 ACAAAAGACTT 610 > Ahg495912 jgi|Araly1|495912|fgenesh2_kg.8__1728__AT5G58060.1 Length=941 Score = 355 bits (192), Expect = 3e-97 Identities = 260/289 (90%), Gaps = 20/289 (7%) Strand=Plus/Minus Query 766 CATAAGGAAGCGCACACAAATTCAATCAGATCAAATCTGGGAAAGACAATTCAAATCTTG 825 ||||||||||||| ||||||||||||||||| ||||||| ||| |||||| |||||||| Sbjct 940 CATAAGGAAGCGCGCACAAATTCAATCAGAT--AATCTGGCAAACACAATTGAAATCTTG 883 Query 826 CAGAAGTTGACATTATGTATTTGGATAAACACACCACACGACTCGAGACTTATGG-A-AT 883 |||||| ||||||||||||||||||||||||||||||||||| |||| ||||||| | || Sbjct 882 CAGAAG-TGACATTATGTATTTGGATAAACACACCACACGACGCGAGTCTTATGGAATAT 824 Query 884 CAAAATAATGCATGCAAACTACAGACGGAATTATATGTATAGATAAGACGATAGAAAAAA 943 | ||||||||||||||||||||||||||||||||||||||||| || | | Sbjct 823 C-AAATAATGCATGCAAACTACAGACGGAATTATATGTATAGA-AA-A--A--------- 778 Query 944 CAGTCTCCCCCCAGCAAAAGTTTGGTTGACTATATACCCAGCAGGACTTCCAGCTCACAG 1003 ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 777 CAGTCTCCCCCCAGCAAAAGTTTGGTTGACTATATACCCAGGACT-CTTCCAGCTCACAG 719 Query 1004 AATAGTACAGCATGAATTTGTTTTCTTCGCTTGCTTGTAAAACATCTGT 1052 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 AATAGTACAGCATGAATTTGTTTTCTTCGCTTGCTTGTAAAACATCTGT 670 > Ahg950520 jgi|Araly1|950520|scaffold_802407.1 Length=475 Score = 78.7 bits (42), Expect = 8e-14 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 994 CAGCTCACAGAATAGTACAGCATGAATTTGTTTTCTTCGCTTGCTTGTAAAACATCT 1050 ||||| | ||||| ||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 459 CAGCTTAGAGAATTGTACAACATGAGTTTGTTTTCTTCGCTTGCTTGTAAAACATCT 403 > Ahg950519 jgi|Araly1|950519|scaffold_802406.1 Length=644 Score = 67.6 bits (36), Expect = 2e-10 Identities = 51/58 (88%), Gaps = 2/58 (3%) Strand=Plus/Minus Query 994 CAGCTCACAGAA-TAGTACAGCATGAATTTGTTTTCTTCGCTTGCTTGTAAAACATCT 1050 ||||| | |||| | ||||| || || ||||||||||||||||||||||||||||||| Sbjct 627 CAGCTTAGAGAAGT-GTACAACAAGAGTTTGTTTTCTTCGCTTGCTTGTAAAACATCT 571 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39647833680 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5